Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000421.1

Orthogroup ID

OG0008619

Physical Location & Seq

Genomic Coordinates Reverse (-)

82218 .. 82598

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000421.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atggctagcctcgtccggagactgaccagaaactcaacctctctaagaacccatattttccctatacctaaacccaatcccattacccatcacaatcatctgggccctcccaaatctgatacccaccttccccatttgggtcctataaccgtcgacaaggtcgaattgtcgttgccggttttccccagttttccattcgggtattgcttgaatccgatttcccaaattgggtcggagcggttggggctgtgcgaggccgatggggtcgggtctgatgacgtggggacgatttgggctgacagcgtgaagaagaagaggaagaggaagatgaacaagcataagttgaggaagctcaggaagagtcttcgtcgcaagacgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1713

Protein Analysis

126

Amino Acids

14.22

Weight (kDa)

10.67

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63150
fragaria_vesca	FvH4_5g06710
malus_domestica	MD02G1049300.v1.1 MD06G1161600.v1.1 MD14G1167200.v1.1
prunus_persica	Prupe.3G296000_v2.0.a1 Prupe.5G161500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0191931
rosa_laevigata	RLG00000004417
rosa_multiflora	Rmu_sc0018275.1_g000002 Rmu_ssc0000421.1_g000016
rosa_roxburghii	Rroxscaffold_153G00436790 Rroxscaffold_2G00104870
rosa_rugosa	Rorug06G0511800
rosa_samantha	Rh4CG099700 Rh4CG149200 Rh6DG182200 Rh6DG333700 Rh7AG122000 Rh7CG126200
rosa_wichuraiana	Rw5G016780 Rw5G034310 Rw6G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	153
AccIII	TCCGGA	1 cut(s)	15
AciI	CCGC	1 cut(s)	238
AfiI	CCNNNNNNNGG	2 cut(s)	137, 228
AgsI	TTSAA	1 cut(s)	211
AjiI	CACGTC	2 cut(s)	280, 378
AluBI	AGCT	1 cut(s)	352
AluI	AGCT	1 cut(s)	352
Alw26I	GTCTC	1 cut(s)	13
Aor13HI	TCCGGA	1 cut(s)	15
AoxI	GGCC	2 cut(s)	103, 255
ApaI	GGGCCC	1 cut(s)	107
AspS9I	GGNCC	3 cut(s)	103, 104, 140
AsuNHI	GCTAGC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	356
BccI	CCATC	2 cut(s)	96, 254
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	140
BmgBI	CACGTC	2 cut(s)	280, 378
BmgT120I	GGNCC	3 cut(s)	103, 104, 140
BmiI	GGNNCC	2 cut(s)	105, 141
BmrI	ACTGGG	1 cut(s)	180
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	356
Bpu10I	CCTNAGC	1 cut(s)	353
BsaWI	WCCGGW	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 228
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	186
BseAI	TCCGGA	1 cut(s)	15
BseLI	CCNNNNNNNGG	2 cut(s)	137, 228
BseMII	CTCAG	1 cut(s)	367
BseNI	ACTGG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	107
BshFI	GGCC	2 cut(s)	105, 257
BsiSI	CCGG	2 cut(s)	16, 176
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	137, 228
BsmAI	GTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	2 cut(s)	105, 257
Bsp120I	GGGCCC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp13I	TCCGGA	1 cut(s)	15
BspACI	CCGC	1 cut(s)	238
BspANI	GGCC	2 cut(s)	105, 257
BspCNI	CTCAG	1 cut(s)	366
BspEI	TCCGGA	1 cut(s)	15
BspLI	GGNNCC	2 cut(s)	105, 141
BspOI	GCTAGC	1 cut(s)	9
BsrBI	CCGCTC	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	3 cut(s)	308, 314, 353
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	44, 353
BstMAI	GTCTC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	244
BstSLI	GKGCMC	1 cut(s)	107
BstV2I	GAAGAC	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	105, 257
BtrI	CACGTC	2 cut(s)	280, 378
Cac8I	GCNNGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	3 cut(s)	103, 104, 140
CviJI	RGCY	7 cut(s)	5, 9, 105, 247, 257, 296, 352
CviKI_1	RGCY	7 cut(s)	5, 9, 105, 247, 257, 296, 352
DdeI	CTNAG	2 cut(s)	44, 353
Eam1104I	CTCTTC	3 cut(s)	308, 314, 353
EarI	CTCTTC	3 cut(s)	308, 314, 353
Eco24I	GRGCYC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	140
EcoO109I	RGGNCCY	2 cut(s)	104, 140
EcoT38I	GRGCYC	1 cut(s)	107
FaiI	YATR	4 cut(s)	54, 65, 146, 339
FaqI	GGGAC	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	107
FspBI	CTAG	1 cut(s)	6
HaeIII	GGCC	2 cut(s)	105, 257
HapII	CCGG	2 cut(s)	16, 176
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	211, 361
HpaII	CCGG	2 cut(s)	16, 176
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	4 cut(s)	118, 216, 235, 274
Hpy188III	TCNNGA	2 cut(s)	16, 355
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	2 cut(s)	155, 372
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	2 cut(s)	279, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	244
HpyF3I	CTNAG	2 cut(s)	44, 353
HpySE526I	ACGT	2 cut(s)	279, 377
Kpn2I	TCCGGA	1 cut(s)	15
LmnI	GCTCC	1 cut(s)	235
LpnPI	CCDG	6 cut(s)	29, 40, 86, 189, 199, 340
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	2 cut(s)	279, 377
MbiI	CCGCTC	1 cut(s)	238
MboII	GAAGA	7 cut(s)	319, 322, 325, 331, 337, 356, 370
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	2 cut(s)	164, 225
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	7 cut(s)	20, 49, 117, 247, 309, 315, 339
MroI	TCCGGA	1 cut(s)	15
MspI	CCGG	2 cut(s)	16, 176
MwoI	GCNNNNNNNGC	1 cut(s)	244
NheI	GCTAGC	1 cut(s)	5
NlaIV	GGNNCC	2 cut(s)	105, 141
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	211
PflFI	GACNNNGTC	1 cut(s)	158
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PpuMI	RGGWCCY	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	105, 141
PspOMI	GGGCCC	1 cut(s)	103
PspPI	GGNCC	3 cut(s)	103, 104, 140
PspPPI	RGGWCCY	1 cut(s)	140
PsyI	GACNNNGTC	1 cut(s)	158
SalI	GTCGAC	1 cut(s)	152
Sau96I	GGNCC	3 cut(s)	103, 104, 140
SchI	GAGTC	1 cut(s)	370
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	7 cut(s)	41, 70, 129, 162, 282, 354, 380
SinI	GGWCC	1 cut(s)	140
Sse9I	AATT	2 cut(s)	164, 225
SsiI	CCGC	1 cut(s)	238
SspMI	CTAG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	2 cut(s)	282, 380
TaqI	TCGA	2 cut(s)	153, 162
TasI	AATT	2 cut(s)	164, 225
TfiI	GAWTC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	344
Tth111I	GACNNNGTC	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.