Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008619

Physical Location & Seq

Genomic Coordinates Reverse (-)

32298408 .. 32299026

Gene Structure 619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG182200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAATCGCGCCGTTGCAGTACACAGCTCCTTCCCTGCTCTTGCCATCCAAGTGCATCTCAAGGTCCCTGGAGGCGTAAGGCGTCTCAAGAAGCCTCCAAGATCTTGTCTCAGACGAATAAACGTCCACCTAGCGCACCCAATTGTGCTTGCGGGTGGTACTAAGGCAGACCACCTTGTAATAAGGCGATTTGGAAGATGGAATGCACAGAAAGAGGCCATTGCAGGACTGAAGAATCTTCAACCCAAACCCATTTCGATCACCTTAGACGAAATTATTAAAGATGTTGAGACTTTTGAAGGGGTTGATAGAGCGTTGATGGTTACCAGGGTGAAGGTCATGGACGAAATGACGAGGTGGGAAAGACCCAGATGGGTTTTTATGGAGAGAAATGAAGGTGAAGTCTTGGGTTGTGTGGGAGAAGGAAGCAGAGACTTTGGGGTTCGGGTTTTGGAGGGTGTGGCGGTGACGGAACTCGGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.02

Weight (kDa)

10.09

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008619)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63150
fragaria_vesca	FvH4_5g06710
malus_domestica	MD02G1049300.v1.1 MD06G1161600.v1.1 MD14G1167200.v1.1
prunus_persica	Prupe.3G296000_v2.0.a1 Prupe.5G161500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0191931
rosa_laevigata	RLG00000004417
rosa_multiflora	Rmu_sc0018275.1_g000002 Rmu_ssc0000421.1_g000016
rosa_roxburghii	Rroxscaffold_153G00436790 Rroxscaffold_2G00104870
rosa_rugosa	Rorug06G0511800
rosa_samantha	Rh4CG099700 Rh4CG149200 Rh6DG182200 Rh6DG333700 Rh7AG122000 Rh7CG126200
rosa_wichuraiana	Rw5G016780 Rw5G034310 Rw6G009920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	9
AciI	CCGC	2 cut(s)	152, 464
AcuI	CTGAAG	1 cut(s)	251
AcyI	GRCGYC	1 cut(s)	82
AfaI	GTAC	2 cut(s)	21, 160
AgsI	TTSAA	2 cut(s)	242, 299
AjnI	CCWGG	2 cut(s)	67, 326
AluBI	AGCT	1 cut(s)	27
AluI	AGCT	1 cut(s)	27
Alw26I	GTCTC	4 cut(s)	89, 113, 284, 426
Ama87I	CYCGRG	1 cut(s)	476
AoxI	GGCC	1 cut(s)	216
AspLEI	GCGC	2 cut(s)	11, 136
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	4 cut(s)	253, 343, 410, 478
AvaI	CYCGRG	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	64
BccI	CCATC	4 cut(s)	53, 192, 313, 366
BciT130I	CCWGG	2 cut(s)	69, 328
BcoDI	GTCTC	4 cut(s)	89, 113, 284, 426
BfaI	CTAG	1 cut(s)	131
BglII	AGATCT	1 cut(s)	101
Bme1390I	CCNGG	2 cut(s)	69, 328
Bme18I	GGWCC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	69, 328
BmsI	GCATC	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	90
BpuEI	CTTGAG	2 cut(s)	44, 71
BsaHI	GRCGYC	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	67, 327
Bse3DI	GCAATG	1 cut(s)	219
BseBI	CCWGG	2 cut(s)	69, 328
BseDI	CCNNGG	2 cut(s)	67, 327
BseGI	GGATG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	124
Bsh1236I	CGCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	476
BslFI	GGGAC	1 cut(s)	50
BsmAI	GTCTC	4 cut(s)	89, 113, 284, 426
BsmBI	CGTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	476
Bsp143I	GATC	2 cut(s)	101, 258
BspACI	CCGC	2 cut(s)	152, 464
BspANI	GGCC	1 cut(s)	218
BspCNI	CTCAG	1 cut(s)	123
BspFNI	CGCG	1 cut(s)	9
BspLI	GGNNCC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	219
BssECI	CCNNGG	2 cut(s)	67, 327
BssMI	GATC	2 cut(s)	101, 258
BssNI	GRCGYC	1 cut(s)	82
Bst2UI	CCWGG	2 cut(s)	69, 328
BstACI	GRCGYC	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	3 cut(s)	110, 162, 265
BstEII	GGTNACC	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	45
BstFNI	CGCG	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	11, 136
BstKTI	GATC	2 cut(s)	104, 261
BstMAI	GTCTC	4 cut(s)	89, 113, 284, 426
BstMBI	GATC	2 cut(s)	101, 258
BstNI	CCWGG	2 cut(s)	69, 328
BstPI	GGTNACC	1 cut(s)	322
BstSCI	CCNGG	2 cut(s)	67, 326
BstUI	CGCG	1 cut(s)	9
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	218
BtsCI	GGATG	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	150
CfoI	GCGC	2 cut(s)	11, 136
Cfr13I	GGNCC	1 cut(s)	64
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	20, 159
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	3 cut(s)	27, 94, 218
CviKI_1	RGCY	3 cut(s)	27, 94, 218
CviQI	GTAC	2 cut(s)	20, 159
DdeI	CTNAG	3 cut(s)	110, 162, 265
DpnI	GATC	2 cut(s)	103, 260
DpnII	GATC	2 cut(s)	101, 258
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	476
Eco91I	GGTNACC	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	64
EcoO65I	GGTNACC	1 cut(s)	322
EcoRII	CCWGG	2 cut(s)	67, 326
Esp3I	CGTCTC	1 cut(s)	89
FaeI	CATG	1 cut(s)	343
FaiI	YATR	2 cut(s)	341, 383
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	1 cut(s)	339
FauI	CCCGC	1 cut(s)	145
FokI	GGATG	1 cut(s)	32
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	2 cut(s)	10, 135
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	218
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	2 cut(s)	11, 136
Hin1I	GRCGYC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	343
Hin6I	GCGC	2 cut(s)	9, 134
HinP1I	GCGC	2 cut(s)	9, 134
HinfI	GANTC	2 cut(s)	4, 235
HphI	GGTGA	4 cut(s)	253, 343, 410, 478
Hpy166II	GTNNAC	2 cut(s)	22, 127
Hpy188I	TCNGA	1 cut(s)	113
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	2 cut(s)	22, 127
HpyAV	CCTTC	5 cut(s)	40, 293, 328, 389, 416
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	4 cut(s)	17, 55, 206, 224
HpyF3I	CTNAG	3 cut(s)	110, 162, 265
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	82
Hsp92II	CATG	1 cut(s)	343
HspAI	GCGC	2 cut(s)	9, 134
Kzo9I	GATC	2 cut(s)	101, 258
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	7 cut(s)	48, 54, 81, 210, 313, 340, 382
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	2 cut(s)	322, 466
MalI	GATC	2 cut(s)	103, 260
MboI	GATC	2 cut(s)	101, 258
MboII	GAAGA	3 cut(s)	207, 230, 244
MfeI	CAATTG	1 cut(s)	141
MflI	RGATCY	1 cut(s)	101
MluCI	AATT	2 cut(s)	141, 273
MnlI	CCTC	5 cut(s)	65, 105, 208, 348, 448
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	69, 328
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	208
MvaI	CCWGG	2 cut(s)	69, 328
MvnI	CGCG	1 cut(s)	9
NdeII	GATC	2 cut(s)	101, 258
NlaIII	CATG	1 cut(s)	343
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	466
PctI	GAATGC	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	4, 235
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	2 cut(s)	67, 326
PspEI	GGTNACC	1 cut(s)	322
PspGI	CCWGG	2 cut(s)	67, 326
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	1 cut(s)	64
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	101
RsaI	GTAC	2 cut(s)	21, 160
RsaNI	GTAC	2 cut(s)	20, 159
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	101, 258
Sau96I	GGNCC	1 cut(s)	64
ScrFI	CCNGG	2 cut(s)	69, 328
SetI	ASST	9 cut(s)	29, 66, 126, 132, 177, 266, 339, 359, 400
SfaNI	GCATC	1 cut(s)	64
SinI	GGWCC	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	2 cut(s)	59, 86
SmoI	CTYRAG	2 cut(s)	59, 86
Sse9I	AATT	2 cut(s)	141, 273
SsiI	CCGC	2 cut(s)	152, 464
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	67, 326
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	1 cut(s)	257
TasI	AATT	2 cut(s)	141, 273
TatI	WGTACW	1 cut(s)	19
TfiI	GAWTC	2 cut(s)	4, 235
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	466
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	2 cut(s)	17, 408
TspGWI	ACGGA	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	64
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.