Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010751

Physical Location & Seq

Genomic Coordinates Forward (+)

25367031 .. 25369297

Gene Structure 2267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G63280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGGAAGACTTTGGGAATCACTGCCCGTGATTCTTCTACTCTTAGTTCTTCTTCTTCATCAATCAGTCTCTCAGGGGTTTGAAGAATCTGAATCTACTAGATTGGTTAACGAAGAAGTAGAAGTTAGTAATGCTCCAGAAATACATTGTTCCCGAGAAAGAAGTCGAGCAGCTTGGCAGATTATACAAGATTATTTGACGCCATTTGTGGAACGGGAAAGATATGAAATTCCAAAAAATTGTAGGCTGCATCCTGATAATGATTTATACAGAGATCAGGAACATCATAAGGTTCATGTTGATGTCTTCGAATGGAAATGTGGTTACTGCAAGAAAAGTTTCAATGATGAGAAATTTCTTGACAAGCATTTCAGTACTAGACATTATAATCTTTTAAATACGACTGATACAAAGTGTTTAGCCGACCTGTGTGGTGCATTGCATTGTGACTTTGTATTGAGCTCTAAGAAACCCAAGAGCAAGTGCAACCCTCCTGCTGTTGCCAAAAACCGTCATCTCTGCGAGAGCGTTGCCAATAGTTGTTTCCCAGTGAGTCAAGGTCCCTCAGCTAGTCGTCTTCATGAACACTTTTTGCGCCAATTCTGTGATGCTCATACCTGCACTGGAAATGATAAACCCTTTCCTAGAGGAGGCAAGAAGAAATCGGGTGTCTTCTACCTCGCCATTTCAATATTGACCTTGATGCTACTCCCACTCTTTTATCTTCTAGTCTTCTTACATCAAAGAGAAAAGAGAAGCGGAACACAAGATTTGCGTCGTATTATAAAATCTGGAAAAAAAACAAAACCGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

31.28

Weight (kDa)

8.95

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63280
fragaria_vesca	FvH4_5g07330 FvH4_5g07330 FvH4_5g07330
malus_domestica	MD06G1153500.v1.1 MD06G1157300.v1.1 MD14G1163900.v1.1
prunus_persica	Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1
pyrus_communis	pycom14g13660
rosa_chinensis	RchiOBHm_Chr7g0191231
rosa_laevigata	RLG00000004467
rosa_multiflora	Rmu_sc0004860.1_g000012
rosa_roxburghii	Rroxscaffold_3G00263960
rosa_rugosa	Rorug06G0509700
rosa_samantha	Rh7AG116900 Rh7CG121800 Rh7DG120300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	387, 785
Acc36I	ACCTGC	1 cut(s)	626
AciI	CCGC	1 cut(s)	759
AcsI	RAATTY	2 cut(s)	228, 353
AcyI	GRCGYC	1 cut(s)	200
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	1 cut(s)	650
AgsI	TTSAA	3 cut(s)	83, 343, 690
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AluBI	AGCT	3 cut(s)	173, 462, 569
AluI	AGCT	3 cut(s)	173, 462, 569
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	170, 247
ApoI	RAATTY	2 cut(s)	228, 353
Asp700I	GAANNNNTTC	1 cut(s)	338
AspLEI	GCGC	1 cut(s)	597
AspS9I	GGNCC	1 cut(s)	560
AsuII	TTCGAA	1 cut(s)	309
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	560
BanII	GRGCYC	1 cut(s)	464
BbsI	GAAGAC	5 cut(s)	13, 298, 569, 664, 724
Bbv12I	GWGCWC	1 cut(s)	464
BbvCI	CCTCAGC	1 cut(s)	565
BbvI	GCAGC	2 cut(s)	182, 234
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	5 cut(s)	99, 378, 570, 645, 728
BfuAI	ACCTGC	1 cut(s)	626
BisI	GCNGC	2 cut(s)	171, 248
BlsI	GCNGC	2 cut(s)	172, 249
BmcAI	AGTACT	1 cut(s)	376
Bme18I	GGWCC	1 cut(s)	560
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	562
BmrI	ACTGGG	1 cut(s)	542
BmsI	GCATC	3 cut(s)	259, 598, 693
BmuI	ACTGGG	1 cut(s)	542
BpiI	GAAGAC	5 cut(s)	13, 298, 569, 664, 724
BpmI	CTGGAG	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	565
Bpu14I	TTCGAA	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	1 cut(s)	650
Bse1I	ACTGG	2 cut(s)	548, 628
Bse3DI	GCAATG	1 cut(s)	437
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	650
BseMI	GCAATG	1 cut(s)	437
BseMII	CTCAG	2 cut(s)	86, 579
BseNI	ACTGG	2 cut(s)	548, 628
BseRI	GAGGAG	1 cut(s)	663
BseXI	GCAGC	2 cut(s)	182, 234
BsgI	GTGCAG	1 cut(s)	604
BsiHKAI	GWGCWC	1 cut(s)	464
BsiHKCI	CYCGRG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	1 cut(s)	650
BsmAI	GTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	546
BsoBI	CYCGRG	1 cut(s)	153
Bsp119I	TTCGAA	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	1 cut(s)	759
BspCNI	CTCAG	2 cut(s)	85, 578
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	626
BspT104I	TTCGAA	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	437
BsrI	ACTGG	2 cut(s)	548, 628
BssMI	GATC	1 cut(s)	274
BssNI	GRCGYC	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	512, 810
BstACI	GRCGYC	1 cut(s)	200
BstBI	TTCGAA	1 cut(s)	309
BstDEI	CTNAG	4 cut(s)	43, 72, 465, 565
BstENI	CCTNNNNNAGG	1 cut(s)	648
BstF5I	GGATG	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	182, 234
BstV2I	GAAGAC	5 cut(s)	13, 298, 569, 664, 724
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	3 cut(s)	20, 555, 621
BveI	ACCTGC	1 cut(s)	626
CciI	TCATGA	1 cut(s)	580
CfoI	GCGC	1 cut(s)	597
Cfr13I	GGNCC	1 cut(s)	560
CseI	GACGC	2 cut(s)	208, 764
Csp6I	GTAC	1 cut(s)	375
CviAII	CATG	2 cut(s)	296, 581
CviJI	RGCY	5 cut(s)	173, 247, 422, 462, 569
CviKI_1	RGCY	5 cut(s)	173, 247, 422, 462, 569
CviQI	GTAC	1 cut(s)	375
DdeI	CTNAG	4 cut(s)	43, 72, 465, 565
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
DraI	TTTAAA	1 cut(s)	396
Ecl136II	GAGCTC	1 cut(s)	462
Eco24I	GRGCYC	1 cut(s)	464
Eco47I	GGWCC	1 cut(s)	560
Eco53kI	GAGCTC	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	153
EcoICRI	GAGCTC	1 cut(s)	462
EcoNI	CCTNNNNNAGG	1 cut(s)	648
EcoO109I	RGGNCCY	1 cut(s)	560
EcoT38I	GRGCYC	1 cut(s)	464
FaeI	CATG	2 cut(s)	299, 584
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	2 cut(s)	295, 580
Fnu4HI	GCNGC	2 cut(s)	171, 248
FokI	GGATG	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	2 cut(s)	171, 248
FspBI	CTAG	5 cut(s)	99, 378, 570, 645, 728
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	2 cut(s)	171, 248
GsuI	CTGGAG	1 cut(s)	120
HgaI	GACGC	2 cut(s)	208, 764
HhaI	GCGC	1 cut(s)	597
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	299, 584
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	5 cut(s)	17, 31, 86, 92, 553
HpaI	GTTAAC	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	7 cut(s)	137, 153, 254, 278, 359, 581, 792
Hpy8I	GTNNAC	1 cut(s)	109
Hpy99I	CGWCG	1 cut(s)	780
HpyCH4III	ACNGT	2 cut(s)	512, 810
HpyCH4V	TGCA	6 cut(s)	250, 330, 437, 442, 486, 621
HpyF3I	CTNAG	4 cut(s)	43, 72, 465, 565
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	2 cut(s)	299, 584
HspAI	GCGC	1 cut(s)	595
KspAI	GTTAAC	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	2 cut(s)	182, 234
LweI	GCATC	3 cut(s)	259, 598, 693
MaeI	CTAG	5 cut(s)	99, 378, 570, 645, 728
MaeIII	GTNAC	2 cut(s)	323, 446
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	4 cut(s)	228, 238, 353, 599
MlyI	GAGTC	1 cut(s)	562
MnlI	CCTC	5 cut(s)	501, 574, 641, 644, 689
MroXI	GAANNNNTTC	1 cut(s)	338
MseI	TTAA	2 cut(s)	108, 395
MslI	CAYNNNNRTG	1 cut(s)	300
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	299, 584
NlaIV	GGNNCC	1 cut(s)	562
NmuCI	GTSAC	1 cut(s)	446
NspV	TTCGAA	1 cut(s)	309
PagI	TCATGA	1 cut(s)	580
PdmI	GAANNNNTTC	1 cut(s)	338
PfeI	GAWTC	4 cut(s)	17, 31, 86, 92
PkrI	GCNGC	2 cut(s)	172, 249
PleI	GAGTC	1 cut(s)	561
PpsI	GAGTC	1 cut(s)	561
PpuMI	RGGWCCY	1 cut(s)	560
PsiI	TTATAA	2 cut(s)	387, 785
Psp124BI	GAGCTC	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	560
PspN4I	GGNNCC	1 cut(s)	562
PspPI	GGNCC	1 cut(s)	560
PspPPI	RGGWCCY	1 cut(s)	560
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	464
SaqAI	TTAA	2 cut(s)	108, 395
SatI	GCNGC	2 cut(s)	171, 248
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	1 cut(s)	560
ScaI	AGTACT	1 cut(s)	376
SchI	GAGTC	1 cut(s)	562
SduI	GDGCHC	1 cut(s)	464
SetI	ASST	9 cut(s)	175, 294, 429, 464, 562, 571, 620, 681, 701
SfaNI	GCATC	3 cut(s)	259, 598, 693
SfuI	TTCGAA	1 cut(s)	309
SinI	GGWCC	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	4 cut(s)	228, 238, 353, 599
SsiI	CCGC	1 cut(s)	759
SspI	AATATT	1 cut(s)	693
SspMI	CTAG	5 cut(s)	99, 378, 570, 645, 728
SstI	GAGCTC	1 cut(s)	464
TaaI	ACNGT	2 cut(s)	512, 810
TaqI	TCGA	2 cut(s)	166, 309
TasI	AATT	4 cut(s)	228, 238, 353, 599
TatI	WGTACW	1 cut(s)	374
TfiI	GAWTC	4 cut(s)	17, 31, 86, 92
Tru1I	TTAA	2 cut(s)	108, 395
Tru9I	TTAA	2 cut(s)	108, 395
TscAI	CASTG	3 cut(s)	27, 555, 628
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	2 cut(s)	170, 247
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	5 cut(s)	47, 240, 284, 569, 597
TspRI	CASTG	3 cut(s)	27, 555, 628
VpaK11BI	GGWCC	1 cut(s)	560
XagI	CCTNNNNNAGG	1 cut(s)	648
XapI	RAATTY	2 cut(s)	228, 353
XmnI	GAANNNNTTC	1 cut(s)	338
XspI	CTAG	5 cut(s)	99, 378, 570, 645, 728
ZrmI	AGTACT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.