Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010751

Physical Location & Seq

Genomic Coordinates Reverse (-)

29929270 .. 29933367

Gene Structure 4098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1157300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAAGAAAACCAACCTGTTTGTTTCAATCCTTCTCTTCTTATCCTTCAGCGTACTCCAAGTCTCCTCCCTTACGCAGACAAACCAGGATTTTGAAAAATCTGAATCTTCAAGAACTCTTGAACAAGGGCAAGAGCATGCTCATGAAGTGCACTGTTCCAGAGAAAGAAGCAGGGCAGCTTGGCAAATTATTGAGAAGTATTTGATGCCATTTGTGGAACATGAGCACTATGAGATTCCAAGTAACTGTCGACTTCATCCCGACAATGATCTATTTAGAGATCAGGAAGAGCACAAGATTCATTTGGATATAAACGAATGGCAGTGCGGATACTGTAAGAAAAGCTTCCGTGCTGAAATGTTTCTTGATCAACATTTTGACAACAGACACTACAATCTTCTGAATGTAAGTGGCAGCAAGTGCTTAGCTGATTTATGCGGAGCTTTGCATTGCGATGCTGTGATGAATACCAAGTTGAGCAAAACCAAATGCAATCCTGCATCTGTTGCACGGAATCACCACCTATGTGAGGGTCTTGCCAATAGCTGTTTTCCGATTAATCAAAGTCCTTCAGCCCGCCGTCTTAATGAGTTTTTCTTGCACCAATTTTGTCATGCTCATACTTGCTCGGGGAAACGGAAGCTTTTTCCTAGAGGAGGAAAGAAACATATAAGTGTATTCTACCTGGCTATCTCCATACTGACTTTGATGCTGCTCCCTATTTTCTATCTGATAGTGTATTTGCACCAAAGAGATGAGGAAAGGAACCCAAGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

260

Amino Acids

30.19

Weight (kDa)

8.24

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63280
fragaria_vesca	FvH4_5g07330 FvH4_5g07330 FvH4_5g07330
malus_domestica	MD06G1153500.v1.1 MD06G1157300.v1.1 MD14G1163900.v1.1
prunus_persica	Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1
pyrus_communis	pycom14g13660
rosa_chinensis	RchiOBHm_Chr7g0191231
rosa_laevigata	RLG00000004467
rosa_multiflora	Rmu_sc0004860.1_g000012
rosa_roxburghii	Rroxscaffold_3G00263960
rosa_rugosa	Rorug06G0509700
rosa_samantha	Rh7AG116900 Rh7CG121800 Rh7DG120300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	250
AciI	CCGC	3 cut(s)	327, 438, 577
AcuI	CTGAAG	2 cut(s)	31, 555
AfaI	GTAC	1 cut(s)	54
AfiI	CCNNNNNNNGG	2 cut(s)	529, 656
AgsI	TTSAA	4 cut(s)	27, 95, 111, 122
AjnI	CCWGG	2 cut(s)	84, 684
AleI	CACNNNNGTG	1 cut(s)	525
AluBI	AGCT	7 cut(s)	179, 345, 428, 443, 546, 643, 776
AluI	AGCT	7 cut(s)	179, 345, 428, 443, 546, 643, 776
Alw21I	GWGCWC	3 cut(s)	153, 228, 294
Alw26I	GTCTC	1 cut(s)	67
Alw44I	GTGCAC	1 cut(s)	149
Ama87I	CYCGRG	1 cut(s)	628
ApaLI	GTGCAC	1 cut(s)	149
ApeKI	GCWGC	3 cut(s)	176, 414, 712
AseI	ATTAAT	1 cut(s)	558
Asp700I	GAANNNNTTC	2 cut(s)	344, 360
AsuHPI	GGTGA	1 cut(s)	509
AvaI	CYCGRG	1 cut(s)	628
BaeGI	GKGCMC	1 cut(s)	153
Bbv12I	GWGCWC	3 cut(s)	153, 228, 294
BbvI	GCAGC	3 cut(s)	188, 426, 699
BceAI	ACGGC	1 cut(s)	564
BciT130I	CCWGG	2 cut(s)	86, 686
BciVI	GTATCC	1 cut(s)	323
BclI	TGATCA	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	1 cut(s)	651
BfuI	GTATCC	1 cut(s)	323
BisI	GCNGC	3 cut(s)	177, 415, 713
BlpI	GCTNAGC	1 cut(s)	424
BlsI	GCNGC	3 cut(s)	178, 416, 714
Bme1390I	CCNGG	2 cut(s)	86, 686
BmeT110I	CYCGRG	1 cut(s)	628
BmiI	GGNNCC	1 cut(s)	767
BmrFI	CCNGG	2 cut(s)	86, 686
BmsI	GCATC	4 cut(s)	195, 445, 509, 699
Bpu1102I	GCTNAGC	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	2 cut(s)	529, 656
Bse3DI	GCAATG	1 cut(s)	448
BseBI	CCWGG	2 cut(s)	86, 686
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	529, 656
BseMI	GCAATG	1 cut(s)	448
BseRI	GAGGAG	2 cut(s)	55, 669
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	3 cut(s)	188, 426, 699
BsiHKAI	GWGCWC	3 cut(s)	153, 228, 294
BsiHKCI	CYCGRG	1 cut(s)	628
BslI	CCNNNNNNNGG	2 cut(s)	529, 656
BsmAI	GTCTC	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	628
Bsp1286I	GDGCHC	3 cut(s)	153, 228, 294
Bsp143I	GATC	3 cut(s)	268, 280, 367
Bsp1720I	GCTNAGC	1 cut(s)	424
BspACI	CCGC	3 cut(s)	327, 438, 577
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	767
BspQI	GCTCTTC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	448
BssMI	GATC	3 cut(s)	268, 280, 367
Bst2UI	CCWGG	2 cut(s)	86, 686
Bst4CI	ACNGT	3 cut(s)	155, 248, 335
Bst6I	CTCTTC	2 cut(s)	41, 282
BstAPI	GCANNNNNTGC	2 cut(s)	420, 506
BstC8I	GCNNGC	2 cut(s)	138, 577
BstDEI	CTNAG	2 cut(s)	424, 777
BstENI	CCTNNNNNAGG	2 cut(s)	527, 654
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	3 cut(s)	271, 283, 370
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	3 cut(s)	268, 280, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	420, 506
BstNI	CCWGG	2 cut(s)	86, 686
BstNSI	RCATGY	1 cut(s)	140
BstSCI	CCNGG	2 cut(s)	84, 684
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	3 cut(s)	188, 426, 699
BsuI	GTATCC	1 cut(s)	323
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	329
BtsIMutI	CAGTG	2 cut(s)	151, 329
Cac8I	GCNNGC	2 cut(s)	138, 577
CciI	TCATGA	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	4 cut(s)	137, 143, 221, 614
CviJI	RGCY	9 cut(s)	179, 345, 428, 443, 546, 575, 643, 689, 776
CviKI_1	RGCY	9 cut(s)	179, 345, 428, 443, 546, 575, 643, 689, 776
CviQI	GTAC	1 cut(s)	53
DdeI	CTNAG	2 cut(s)	424, 777
DpnI	GATC	3 cut(s)	270, 282, 369
DpnII	GATC	3 cut(s)	268, 280, 367
Eam1104I	CTCTTC	2 cut(s)	41, 282
EarI	CTCTTC	2 cut(s)	41, 282
Eco57I	CTGAAG	2 cut(s)	31, 555
Eco88I	CYCGRG	1 cut(s)	628
EcoNI	CCTNNNNNAGG	2 cut(s)	527, 654
EcoRII	CCWGG	2 cut(s)	84, 684
FaeI	CATG	4 cut(s)	140, 146, 224, 617
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FatI	CATG	4 cut(s)	136, 142, 220, 613
FauI	CCCGC	1 cut(s)	584
FbaI	TGATCA	1 cut(s)	367
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	177, 415, 713
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	3 cut(s)	177, 415, 713
FspBI	CTAG	1 cut(s)	651
GluI	GCNGC	3 cut(s)	177, 415, 713
Hin1II	CATG	4 cut(s)	140, 146, 224, 617
HincII	GTYRAC	1 cut(s)	251
HindII	GTYRAC	1 cut(s)	251
HindIII	AAGCTT	2 cut(s)	343, 641
HinfI	GANTC	4 cut(s)	104, 235, 298, 514
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	2 cut(s)	151, 251
Hpy188I	TCNGA	4 cut(s)	103, 402, 555, 732
Hpy188III	TCNNGA	7 cut(s)	111, 119, 143, 159, 260, 284, 365
Hpy8I	GTNNAC	2 cut(s)	151, 251
HpyAV	CCTTC	3 cut(s)	41, 55, 579
HpyCH4III	ACNGT	3 cut(s)	155, 248, 335
HpyCH4V	TGCA	7 cut(s)	151, 448, 492, 500, 509, 601, 745
HpyF10VI	GCNNNNNNNGC	2 cut(s)	420, 506
HpyF3I	CTNAG	2 cut(s)	424, 777
Hsp92II	CATG	4 cut(s)	140, 146, 224, 617
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	3 cut(s)	268, 280, 367
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	2 cut(s)	440, 720
LpnPI	CCDG	9 cut(s)	29, 71, 98, 157, 172, 269, 510, 671, 698
Lsp1109I	GCAGC	3 cut(s)	188, 426, 699
LweI	GCATC	4 cut(s)	195, 445, 509, 699
MaeI	CTAG	1 cut(s)	651
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	3 cut(s)	270, 282, 369
MboI	GATC	3 cut(s)	268, 280, 367
MboII	GAAGA	5 cut(s)	16, 28, 99, 299, 389
MhlI	GDGCHC	3 cut(s)	153, 228, 294
MluCI	AATT	2 cut(s)	186, 605
MnlI	CCTC	5 cut(s)	76, 523, 647, 650, 751
MroXI	GAANNNNTTC	2 cut(s)	344, 360
MseI	TTAA	2 cut(s)	558, 585
MslI	CAYNNNNRTG	4 cut(s)	141, 453, 525, 672
MspR9I	CCNGG	2 cut(s)	86, 686
MvaI	CCWGG	2 cut(s)	86, 686
MwoI	GCNNNNNNNGC	2 cut(s)	420, 506
NdeII	GATC	3 cut(s)	268, 280, 367
NlaIII	CATG	4 cut(s)	140, 146, 224, 617
NlaIV	GGNNCC	1 cut(s)	767
NspI	RCATGY	1 cut(s)	140
OliI	CACNNNNGTG	1 cut(s)	525
PaeI	GCATGC	1 cut(s)	140
PagI	TCATGA	1 cut(s)	142
PciSI	GCTCTTC	1 cut(s)	282
PdmI	GAANNNNTTC	2 cut(s)	344, 360
PfeI	GAWTC	4 cut(s)	104, 235, 298, 514
PkrI	GCNGC	3 cut(s)	178, 416, 714
PshBI	ATTAAT	1 cut(s)	558
Psp6I	CCWGG	2 cut(s)	84, 684
PspGI	CCWGG	2 cut(s)	84, 684
PspN4I	GGNNCC	1 cut(s)	767
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
RseI	CAYNNNNRTG	4 cut(s)	141, 453, 525, 672
SalI	GTCGAC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	558, 585
SatI	GCNGC	3 cut(s)	177, 415, 713
Sau3AI	GATC	3 cut(s)	268, 280, 367
ScrFI	CCNGG	2 cut(s)	86, 686
SduI	GDGCHC	3 cut(s)	153, 228, 294
SfaNI	GCATC	4 cut(s)	195, 445, 509, 699
SmiMI	CAYNNNNRTG	4 cut(s)	141, 453, 525, 672
SphI	GCATGC	1 cut(s)	140
Sse9I	AATT	2 cut(s)	186, 605
SsiI	CCGC	3 cut(s)	327, 438, 577
SspMI	CTAG	1 cut(s)	651
StyD4I	CCNGG	2 cut(s)	84, 684
TaaI	ACNGT	3 cut(s)	155, 248, 335
TaqI	TCGA	1 cut(s)	250
TasI	AATT	2 cut(s)	186, 605
TfiI	GAWTC	4 cut(s)	104, 235, 298, 514
Tru1I	TTAA	2 cut(s)	558, 585
Tru9I	TTAA	2 cut(s)	558, 585
TscAI	CASTG	2 cut(s)	158, 329
TseI	GCWGC	3 cut(s)	176, 414, 712
TspDTI	ATGAA	5 cut(s)	17, 159, 245, 290, 479
TspGWI	ACGGA	3 cut(s)	338, 526, 652
TspRI	CASTG	2 cut(s)	158, 329
VneI	GTGCAC	1 cut(s)	149
VspI	ATTAAT	1 cut(s)	558
XagI	CCTNNNNNAGG	2 cut(s)	527, 654
XceI	RCATGY	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	250
XmnI	GAANNNNTTC	2 cut(s)	344, 360
XspI	CTAG	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.