Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010751

Physical Location & Seq

Genomic Coordinates Forward (+)

57769474 .. 57772429

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAAGAACACAACTTCAACGAGCCTATTTATTTCGATTCTTTTCCTGTTGTTGTTTTCCTCCTCTGCCCAGAATAACCAGGATTCTGAAATTTTTGCAGCTTCTAGAACGCTTCGACAAGAAGAAGAGCATGCTCATGAAGTACATTGTTCAAGAGAAAGAAGTAGGGCGGCATGGAAAATTATCGAGCAGTATTTGATGCCATTTGTGGAAAAAGAACGCTATGAGATCTCAAGTAAGTGTCGCCTTCATCCTGATAATGATCTATTTAGGGATCAGGAACGGCACAAGATTCATTTGGATATAAATGAATGGCAGTGTGGATACTGTAAGAAGAGCTTCCGTGCTGAAAAGTTTCTTGATCAGCATTTTGACAACAGACACTACAATCTTCTGAATGTAGGTCTTGGTAATAGCTGTTTTCCTACCAATCAGGGTCCCTCAGCACGCCGTCTTAATGAAGCAAGTACATGTATTCTACCTGGCTATTTCCATACTGACTCTGATGCTGCTCCCTATTTTCTATGTGATACTTTATTTGCACCAAAGAGAGATGAGAACGGGAACCCAAGAGCTCAGGCGCATCCAGAAAGTCGGGCAGAAGAAGAAACCCTCATAGTTGAGGCATATTTGACTCGAGGGCTTACTGCAAGTGGTACAATGATTAAGATATTTTCTTGCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

26.32

Weight (kDa)

6.21

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63280
fragaria_vesca	FvH4_5g07330 FvH4_5g07330 FvH4_5g07330
malus_domestica	MD06G1153500.v1.1 MD06G1157300.v1.1 MD14G1163900.v1.1
prunus_persica	Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1
pyrus_communis	pycom14g13660
rosa_chinensis	RchiOBHm_Chr7g0191231
rosa_laevigata	RLG00000004467
rosa_multiflora	Rmu_sc0004860.1_g000012
rosa_roxburghii	Rroxscaffold_3G00263960
rosa_rugosa	Rorug06G0509700
rosa_samantha	Rh7AG116900 Rh7CG121800 Rh7DG120300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	1 cut(s)	90
AfaI	GTAC	3 cut(s)	144, 469, 658
AflIII	ACRYGT	1 cut(s)	470
AgsI	TTSAA	2 cut(s)	18, 153
AjnI	CCWGG	2 cut(s)	78, 481
AluBI	AGCT	4 cut(s)	101, 339, 417, 575
AluI	AGCT	4 cut(s)	101, 339, 417, 575
Alw21I	GWGCWC	1 cut(s)	577
AlwI	GGATC	1 cut(s)	282
Ama87I	CYCGRG	1 cut(s)	636
ApeKI	GCWGC	2 cut(s)	98, 509
ApoI	RAATTY	1 cut(s)	90
Asp700I	GAANNNNTTC	2 cut(s)	338, 354
AspLEI	GCGC	1 cut(s)	583
AspS9I	GGNCC	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	636
AvaII	GGWCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	577
Bbv12I	GWGCWC	1 cut(s)	577
BbvCI	CCTCAGC	1 cut(s)	442
BbvI	GCAGC	2 cut(s)	110, 496
BceAI	ACGGC	2 cut(s)	299, 435
BciT130I	CCWGG	2 cut(s)	80, 483
BciVI	GTATCC	1 cut(s)	317
BclI	TGATCA	1 cut(s)	361
BfaI	CTAG	1 cut(s)	105
BfuI	GTATCC	1 cut(s)	317
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	3 cut(s)	99, 171, 510
BlsI	GCNGC	3 cut(s)	100, 172, 511
Bme1390I	CCNGG	2 cut(s)	80, 483
Bme18I	GGWCC	1 cut(s)	437
BmeT110I	CYCGRG	1 cut(s)	636
BmgT120I	GGNCC	1 cut(s)	437
BmiI	GGNNCC	3 cut(s)	438, 439, 566
BmrFI	CCNGG	2 cut(s)	80, 483
BmsI	GCATC	3 cut(s)	189, 496, 592
Bpu10I	CCTNAGC	2 cut(s)	442, 576
BpuEI	CTTGAG	1 cut(s)	217
BsaBI	GATNNNNATC	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	80, 483
BseGI	GGATG	2 cut(s)	250, 583
BseJI	GATNNNNATC	1 cut(s)	261
BseMII	CTCAG	2 cut(s)	456, 590
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	2 cut(s)	110, 496
BsiHKAI	GWGCWC	1 cut(s)	577
BsiHKCI	CYCGRG	1 cut(s)	636
BslFI	GGGAC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	423
BsoBI	CYCGRG	1 cut(s)	636
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	4 cut(s)	228, 262, 274, 361
BspACI	CCGC	1 cut(s)	170
BspCNI	CTCAG	2 cut(s)	455, 589
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	3 cut(s)	438, 439, 566
BspPI	GGATC	1 cut(s)	282
BspQI	GCTCTTC	2 cut(s)	120, 329
BssMI	GATC	4 cut(s)	228, 262, 274, 361
Bst2UI	CCWGG	2 cut(s)	80, 483
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	2 cut(s)	120, 329
BstC8I	GCNNGC	2 cut(s)	132, 448
BstDEI	CTNAG	2 cut(s)	442, 576
BstF5I	GGATG	2 cut(s)	250, 583
BstHHI	GCGC	1 cut(s)	583
BstKTI	GATC	4 cut(s)	231, 265, 277, 364
BstMBI	GATC	4 cut(s)	228, 262, 274, 361
BstNI	CCWGG	2 cut(s)	80, 483
BstNSI	RCATGY	2 cut(s)	134, 474
BstSCI	CCNGG	2 cut(s)	78, 481
BstV1I	GCAGC	2 cut(s)	110, 496
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	250, 583
BtsI	GCAGTG	1 cut(s)	323
BtsIMutI	CAGTG	1 cut(s)	323
Cac8I	GCNNGC	2 cut(s)	132, 448
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	1 cut(s)	583
Cfr13I	GGNCC	1 cut(s)	437
Csp6I	GTAC	3 cut(s)	143, 468, 657
CviAII	CATG	4 cut(s)	131, 137, 174, 471
CviJI	RGCY	7 cut(s)	24, 101, 339, 417, 486, 575, 643
CviKI_1	RGCY	7 cut(s)	24, 101, 339, 417, 486, 575, 643
CviQI	GTAC	3 cut(s)	143, 468, 657
DdeI	CTNAG	2 cut(s)	442, 576
DpnI	GATC	4 cut(s)	230, 264, 276, 363
DpnII	GATC	4 cut(s)	228, 262, 274, 361
Eam1104I	CTCTTC	2 cut(s)	120, 329
EarI	CTCTTC	2 cut(s)	120, 329
Ecl136II	GAGCTC	1 cut(s)	575
Eco24I	GRGCYC	1 cut(s)	577
Eco47I	GGWCC	1 cut(s)	437
Eco53kI	GAGCTC	1 cut(s)	575
Eco88I	CYCGRG	1 cut(s)	636
EcoICRI	GAGCTC	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	78, 481
EcoT38I	GRGCYC	1 cut(s)	577
FaeI	CATG	4 cut(s)	134, 140, 177, 474
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	4 cut(s)	130, 136, 173, 470
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	3 cut(s)	99, 171, 510
FokI	GGATG	2 cut(s)	237, 570
FriOI	GRGCYC	1 cut(s)	577
Fsp4HI	GCNGC	3 cut(s)	99, 171, 510
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	1 cut(s)	582
GluI	GCNGC	3 cut(s)	99, 171, 510
HhaI	GCGC	1 cut(s)	583
Hin1II	CATG	4 cut(s)	134, 140, 177, 474
Hin6I	GCGC	1 cut(s)	581
HinP1I	GCGC	1 cut(s)	581
HinfI	GANTC	5 cut(s)	37, 83, 292, 500, 634
Hpy188I	TCNGA	3 cut(s)	88, 396, 505
Hpy188III	TCNNGA	7 cut(s)	105, 137, 153, 254, 278, 359, 587
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	3 cut(s)	98, 542, 650
HpyF3I	CTNAG	2 cut(s)	442, 576
Hsp92II	CATG	4 cut(s)	134, 140, 177, 474
HspAI	GCGC	1 cut(s)	581
KflI	GGGWCCC	1 cut(s)	437
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	4 cut(s)	228, 262, 274, 361
LguI	GCTCTTC	2 cut(s)	120, 329
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	2 cut(s)	110, 496
LweI	GCATC	3 cut(s)	189, 496, 592
MaeI	CTAG	1 cut(s)	105
MalI	GATC	4 cut(s)	230, 264, 276, 363
MboI	GATC	4 cut(s)	228, 262, 274, 361
MboII	GAAGA	7 cut(s)	16, 134, 137, 346, 383, 614, 617
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	2 cut(s)	90, 180
MlyI	GAGTC	2 cut(s)	494, 628
MnlI	CCTC	6 cut(s)	70, 73, 451, 616, 623, 632
MroXI	GAANNNNTTC	2 cut(s)	338, 354
MseI	TTAA	2 cut(s)	456, 666
MslI	CAYNNNNRTG	1 cut(s)	135
MspR9I	CCNGG	2 cut(s)	80, 483
MvaI	CCWGG	2 cut(s)	80, 483
NdeII	GATC	4 cut(s)	228, 262, 274, 361
NlaIII	CATG	4 cut(s)	134, 140, 177, 474
NlaIV	GGNNCC	3 cut(s)	438, 439, 566
NspI	RCATGY	2 cut(s)	134, 474
PaeI	GCATGC	1 cut(s)	134
PaeR7I	CTCGAG	1 cut(s)	636
PagI	TCATGA	1 cut(s)	136
PciI	ACATGT	1 cut(s)	470
PciSI	GCTCTTC	2 cut(s)	120, 329
PdmI	GAANNNNTTC	2 cut(s)	338, 354
PfeI	GAWTC	3 cut(s)	37, 83, 292
PkrI	GCNGC	3 cut(s)	100, 172, 511
PleI	GAGTC	2 cut(s)	494, 628
PpsI	GAGTC	2 cut(s)	494, 628
PpuMI	RGGWCCY	1 cut(s)	437
PscI	ACATGT	1 cut(s)	470
Psp124BI	GAGCTC	1 cut(s)	577
Psp5II	RGGWCCY	1 cut(s)	437
Psp6I	CCWGG	2 cut(s)	78, 481
PspGI	CCWGG	2 cut(s)	78, 481
PspN4I	GGNNCC	3 cut(s)	438, 439, 566
PspPI	GGNCC	1 cut(s)	437
PspPPI	RGGWCCY	1 cut(s)	437
PspXI	VCTCGAGB	1 cut(s)	636
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	3 cut(s)	144, 469, 658
RsaNI	GTAC	3 cut(s)	143, 468, 657
RseI	CAYNNNNRTG	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	577
SapI	GCTCTTC	2 cut(s)	120, 329
SaqAI	TTAA	2 cut(s)	456, 666
SatI	GCNGC	3 cut(s)	99, 171, 510
Sau3AI	GATC	4 cut(s)	228, 262, 274, 361
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	2 cut(s)	494, 628
ScrFI	CCNGG	2 cut(s)	80, 483
SduI	GDGCHC	1 cut(s)	577
SetI	ASST	6 cut(s)	103, 341, 406, 419, 484, 577
SfaNI	GCATC	3 cut(s)	189, 496, 592
Sfr274I	CTCGAG	1 cut(s)	636
SinI	GGWCC	1 cut(s)	437
SlaI	CTCGAG	1 cut(s)	636
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	2 cut(s)	232, 636
SmoI	CTYRAG	2 cut(s)	232, 636
SphI	GCATGC	1 cut(s)	134
Sse9I	AATT	2 cut(s)	90, 180
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	1 cut(s)	105
SstI	GAGCTC	1 cut(s)	577
StyD4I	CCNGG	2 cut(s)	78, 481
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	4 cut(s)	35, 115, 186, 637
TasI	AATT	2 cut(s)	90, 180
TatI	WGTACW	2 cut(s)	142, 467
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	37, 83, 292
Tru1I	TTAA	2 cut(s)	456, 666
Tru9I	TTAA	2 cut(s)	456, 666
TscAI	CASTG	1 cut(s)	323
TseI	GCWGC	2 cut(s)	98, 509
TspDTI	ATGAA	6 cut(s)	17, 153, 239, 284, 324, 474
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	437
XapI	RAATTY	1 cut(s)	90
XbaI	TCTAGA	1 cut(s)	104
XceI	RCATGY	2 cut(s)	134, 474
XhoI	CTCGAG	1 cut(s)	636
XmnI	GAANNNNTTC	2 cut(s)	338, 354
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.