Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004860.1

Orthogroup ID

OG0010751

Physical Location & Seq

Genomic Coordinates Forward (+)

57155 .. 59975

Gene Structure 2821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004860.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ctggtggctggtgctgaagttgctgcagggccactgtggggatggtgggcgttcgcgaggaaaggagagcgtgcacgggggcggaaggcaagcagggcttgggggcgctacaggggcaatgaggctaacttggtagggttagcattgagttgcggtgcggaggcaatgaaaaaccaggattctgaaatttttgcagcttcaagaacgcttcgacaagaagaagagcatgctcatgaagtacattgttcaagagaaagaagtagggcggcatggaaaattatcgagcagtatttgatgccatttgtggaaaaagaacgctatgagatctcaagtaagtgtcgccttcatcctgataatgatctatttagggatcaggaacggcacaagattcatttggatataaatgaatggcagtgtggatactgtaagaagagcttccgtgctgaaaagtttcttgatcagcattttgacaacagacactacaatcttctgaatgtaagcggaagcaagtgcttagctgatctatgcggagctttgcattgtgatgctataatgaatacccagtcaagcaaaaaaaaatgcaatcctgcagctactgcaaggaatcaccacctatgtgagggtcttgctaatagctgttttcctaccaatcagggtccctcagcacgccgtcttaatgaattgtttttgcaccaattctgtcattctcacacttgctcggggaagcagaaacccttttctagaggaggacagaagcaagtacatgtgttctacctggctatttccatactgactctgatgctgctccctattttctatgtgatactttatttgcaccaaagagagatgagaactggtacccaagagctcaggcgcatccagaaagtcgggcagaagaagaaaccctcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

303

Amino Acids

34.82

Weight (kDa)

9.45

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63280
fragaria_vesca	FvH4_5g07330 FvH4_5g07330 FvH4_5g07330
malus_domestica	MD06G1153500.v1.1 MD06G1157300.v1.1 MD14G1163900.v1.1
prunus_persica	Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1
pyrus_communis	pycom14g13660
rosa_chinensis	RchiOBHm_Chr7g0191231
rosa_laevigata	RLG00000004467
rosa_multiflora	Rmu_sc0004860.1_g000012
rosa_roxburghii	Rroxscaffold_3G00263960
rosa_rugosa	Rorug06G0509700
rosa_samantha	Rh7AG116900 Rh7CG121800 Rh7DG120300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	857
AccB1I	GGYRCC	1 cut(s)	857
AccII	CGCG	1 cut(s)	56
AciI	CCGC	6 cut(s)	82, 153, 158, 266, 501, 528
AclWI	GGATC	1 cut(s)	378
AcsI	RAATTY	1 cut(s)	186
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	3 cut(s)	240, 762, 859
AfiI	CCNNNNNNNGG	2 cut(s)	38, 619
AflIII	ACRYGT	1 cut(s)	763
AgsI	TTSAA	2 cut(s)	201, 249
AjnI	CCWGG	2 cut(s)	174, 774
AleI	CACNNNNGTG	1 cut(s)	615
AluBI	AGCT	7 cut(s)	197, 435, 518, 533, 593, 636, 868
AluI	AGCT	7 cut(s)	197, 435, 518, 533, 593, 636, 868
Alw21I	GWGCWC	2 cut(s)	76, 870
Alw44I	GTGCAC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	378
AlwNI	CAGNNNCTG	1 cut(s)	596
Ama87I	CYCGRG	1 cut(s)	718
AoxI	GGCC	1 cut(s)	29
ApaLI	GTGCAC	1 cut(s)	72
ApeKI	GCWGC	4 cut(s)	23, 194, 590, 802
ApoI	RAATTY	1 cut(s)	186
Asp700I	GAANNNNTTC	2 cut(s)	434, 450
Asp718I	GGTACC	1 cut(s)	857
AspLEI	GCGC	2 cut(s)	108, 876
AspS9I	GGNCC	2 cut(s)	29, 656
AsuHPI	GGTGA	1 cut(s)	599
AvaI	CYCGRG	1 cut(s)	718
AvaII	GGWCC	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	857
BanII	GRGCYC	1 cut(s)	870
Bbv12I	GWGCWC	2 cut(s)	76, 870
BbvCI	CCTCAGC	1 cut(s)	661
BbvI	GCAGC	4 cut(s)	10, 206, 602, 789
BccI	CCATC	1 cut(s)	36
BceAI	ACGGC	2 cut(s)	395, 654
BciT130I	CCWGG	2 cut(s)	176, 776
BciVI	GTATCC	1 cut(s)	413
BclI	TGATCA	1 cut(s)	457
BfaI	CTAG	1 cut(s)	741
BfmI	CTRYAG	3 cut(s)	24, 109, 588
BfoI	RGCGCY	1 cut(s)	109
BfuI	GTATCC	1 cut(s)	413
BglII	AGATCT	1 cut(s)	324
BisI	GCNGC	5 cut(s)	24, 195, 267, 591, 803
BlpI	GCTNAGC	1 cut(s)	514
BlsI	GCNGC	5 cut(s)	25, 196, 268, 592, 804
Bme1390I	CCNGG	2 cut(s)	176, 776
Bme18I	GGWCC	1 cut(s)	656
BmeT110I	CYCGRG	1 cut(s)	718
BmgT120I	GGNCC	2 cut(s)	29, 656
BmiI	GGNNCC	3 cut(s)	657, 658, 859
BmrFI	CCNGG	2 cut(s)	176, 776
BmrI	ACTGGG	1 cut(s)	556
BmsI	GCATC	4 cut(s)	285, 535, 789, 885
BmuI	ACTGGG	1 cut(s)	556
Bpu10I	CCTNAGC	2 cut(s)	661, 869
Bpu1102I	GCTNAGC	1 cut(s)	514
BpuEI	CTTGAG	1 cut(s)	313
BsaBI	GATNNNNATC	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 619
Bse1I	ACTGG	2 cut(s)	562, 859
Bse3DI	GCAATG	2 cut(s)	124, 171
Bse8I	GATNNNNATC	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	176, 776
BseGI	GGATG	3 cut(s)	47, 346, 876
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	2 cut(s)	38, 619
BseMI	GCAATG	2 cut(s)	124, 171
BseMII	CTCAG	2 cut(s)	675, 883
BseNI	ACTGG	2 cut(s)	562, 859
BseRI	GAGGAG	1 cut(s)	759
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	4 cut(s)	10, 206, 602, 789
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	31
BshNI	GGYRCC	1 cut(s)	857
BsiHKAI	GWGCWC	2 cut(s)	76, 870
BsiHKCI	CYCGRG	1 cut(s)	718
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	2 cut(s)	38, 619
BsmFI	GGGAC	1 cut(s)	642
BsnI	GGCC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	718
Bsp1286I	GDGCHC	2 cut(s)	76, 870
Bsp143I	GATC	5 cut(s)	324, 358, 370, 457, 520
Bsp1720I	GCTNAGC	1 cut(s)	514
Bsp68I	TCGCGA	1 cut(s)	56
BspACI	CCGC	6 cut(s)	82, 153, 158, 266, 501, 528
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	2 cut(s)	674, 882
BspFNI	CGCG	1 cut(s)	56
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	3 cut(s)	657, 658, 859
BspMAI	CTGCAG	2 cut(s)	28, 592
BspPI	GGATC	1 cut(s)	378
BspQI	GCTCTTC	2 cut(s)	216, 425
BspT107I	GGYRCC	1 cut(s)	857
BsrDI	GCAATG	2 cut(s)	124, 171
BsrI	ACTGG	2 cut(s)	562, 859
BssMI	GATC	5 cut(s)	324, 358, 370, 457, 520
Bst2UI	CCWGG	2 cut(s)	176, 776
Bst4CI	ACNGT	2 cut(s)	36, 425
Bst6I	CTCTTC	2 cut(s)	216, 425
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstC8I	GCNNGC	4 cut(s)	72, 91, 228, 667
BstDEI	CTNAG	3 cut(s)	514, 661, 869
BstENI	CCTNNNNNAGG	1 cut(s)	617
BstF5I	GGATG	3 cut(s)	47, 346, 876
BstFNI	CGCG	1 cut(s)	56
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	2 cut(s)	108, 876
BstKTI	GATC	5 cut(s)	327, 361, 373, 460, 523
BstMBI	GATC	5 cut(s)	324, 358, 370, 457, 520
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 95, 114, 596
BstNI	CCWGG	2 cut(s)	176, 776
BstNSI	RCATGY	2 cut(s)	230, 767
BstSCI	CCNGG	2 cut(s)	174, 774
BstSFI	CTRYAG	3 cut(s)	24, 109, 588
BstSLI	GKGCMC	1 cut(s)	76
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	4 cut(s)	10, 206, 602, 789
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BsuI	GTATCC	1 cut(s)	413
BsuRI	GGCC	1 cut(s)	31
BtsCI	GGATG	3 cut(s)	47, 346, 876
BtsI	GCAGTG	1 cut(s)	419
BtsIMutI	CAGTG	2 cut(s)	32, 419
BtuMI	TCGCGA	1 cut(s)	56
Cac8I	GCNNGC	4 cut(s)	72, 91, 228, 667
CaiI	CAGNNNCTG	1 cut(s)	596
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	2 cut(s)	108, 876
Cfr13I	GGNCC	2 cut(s)	29, 656
Csp6I	GTAC	3 cut(s)	239, 761, 858
CviAII	CATG	4 cut(s)	227, 233, 270, 764
CviQI	GTAC	3 cut(s)	239, 761, 858
DdeI	CTNAG	3 cut(s)	514, 661, 869
DpnI	GATC	5 cut(s)	326, 360, 372, 459, 522
DpnII	GATC	5 cut(s)	324, 358, 370, 457, 520
Eam1104I	CTCTTC	2 cut(s)	216, 425
EarI	CTCTTC	2 cut(s)	216, 425
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	868
Eco24I	GRGCYC	1 cut(s)	870
Eco47I	GGWCC	1 cut(s)	656
Eco53kI	GAGCTC	1 cut(s)	868
Eco57I	CTGAAG	1 cut(s)	36
Eco88I	CYCGRG	1 cut(s)	718
EcoICRI	GAGCTC	1 cut(s)	868
EcoNI	CCTNNNNNAGG	1 cut(s)	617
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRII	CCWGG	2 cut(s)	174, 774
EcoT38I	GRGCYC	1 cut(s)	870
FaeI	CATG	4 cut(s)	230, 236, 273, 767
FalI	AAGNNNNNCTT	4 cut(s)	82, 114, 419, 451
FaqI	GGGAC	1 cut(s)	642
FatI	CATG	4 cut(s)	226, 232, 269, 763
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	5 cut(s)	24, 195, 267, 591, 803
FokI	GGATG	3 cut(s)	54, 333, 863
FriOI	GRGCYC	1 cut(s)	870
Fsp4HI	GCNGC	5 cut(s)	24, 195, 267, 591, 803
FspBI	CTAG	1 cut(s)	741
GlaI	GCGC	2 cut(s)	107, 875
GluI	GCNGC	5 cut(s)	24, 195, 267, 591, 803
HaeII	RGCGCY	1 cut(s)	109
HaeIII	GGCC	1 cut(s)	31
HhaI	GCGC	2 cut(s)	108, 876
Hin1II	CATG	4 cut(s)	230, 236, 273, 767
Hin6I	GCGC	2 cut(s)	106, 874
HinP1I	GCGC	2 cut(s)	106, 874
HinfI	GANTC	4 cut(s)	179, 388, 604, 793
HphI	GGTGA	1 cut(s)	599
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	3 cut(s)	184, 492, 798
Hpy188III	TCNNGA	9 cut(s)	55, 201, 233, 249, 350, 374, 455, 741, 880
Hpy8I	GTNNAC	1 cut(s)	74
HpyAV	CCTTC	2 cut(s)	79, 353
HpyCH4III	ACNGT	2 cut(s)	36, 425
HpyCH4V	TGCA	9 cut(s)	26, 74, 194, 538, 582, 590, 599, 691, 835
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 95, 114, 596
HpyF3I	CTNAG	3 cut(s)	514, 661, 869
Hsp92II	CATG	4 cut(s)	230, 236, 273, 767
HspAI	GCGC	2 cut(s)	106, 874
KflI	GGGWCCC	1 cut(s)	656
KpnI	GGTACC	1 cut(s)	861
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	5 cut(s)	324, 358, 370, 457, 520
LguI	GCTCTTC	2 cut(s)	216, 425
LmnI	GCTCC	2 cut(s)	530, 810
Lsp1109I	GCAGC	4 cut(s)	10, 206, 602, 789
LweI	GCATC	4 cut(s)	285, 535, 789, 885
MaeI	CTAG	1 cut(s)	741
MalI	GATC	5 cut(s)	326, 360, 372, 459, 522
MboI	GATC	5 cut(s)	324, 358, 370, 457, 520
MboII	GAAGA	6 cut(s)	230, 233, 442, 479, 907, 910
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	2 cut(s)	76, 870
MluCI	AATT	4 cut(s)	186, 276, 680, 695
MlyI	GAGTC	1 cut(s)	787
MnlI	CCTC	7 cut(s)	51, 115, 154, 613, 670, 737, 740
MroXI	GAANNNNTTC	2 cut(s)	434, 450
MseI	TTAA	1 cut(s)	675
MslI	CAYNNNNRTG	3 cut(s)	231, 543, 615
MspR9I	CCNGG	2 cut(s)	176, 776
MvaI	CCWGG	2 cut(s)	176, 776
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	4 cut(s)	20, 95, 114, 596
NdeII	GATC	5 cut(s)	324, 358, 370, 457, 520
NlaIII	CATG	4 cut(s)	230, 236, 273, 767
NlaIV	GGNNCC	3 cut(s)	657, 658, 859
NruI	TCGCGA	1 cut(s)	56
NspI	RCATGY	2 cut(s)	230, 767
OliI	CACNNNNGTG	1 cut(s)	615
PaeI	GCATGC	1 cut(s)	230
PagI	TCATGA	1 cut(s)	232
PciI	ACATGT	1 cut(s)	763
PciSI	GCTCTTC	2 cut(s)	216, 425
PdmI	GAANNNNTTC	2 cut(s)	434, 450
PfeI	GAWTC	3 cut(s)	179, 388, 604
PkrI	GCNGC	5 cut(s)	25, 196, 268, 592, 804
PleI	GAGTC	1 cut(s)	787
PpsI	GAGTC	1 cut(s)	787
PpuMI	RGGWCCY	1 cut(s)	656
PscI	ACATGT	1 cut(s)	763
Psp124BI	GAGCTC	1 cut(s)	870
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	2 cut(s)	174, 774
PspGI	CCWGG	2 cut(s)	174, 774
PspN4I	GGNNCC	3 cut(s)	657, 658, 859
PspPI	GGNCC	2 cut(s)	29, 656
PspPPI	RGGWCCY	1 cut(s)	656
PstI	CTGCAG	2 cut(s)	28, 592
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	324
RruI	TCGCGA	1 cut(s)	56
RsaI	GTAC	3 cut(s)	240, 762, 859
RsaNI	GTAC	3 cut(s)	239, 761, 858
RseI	CAYNNNNRTG	3 cut(s)	231, 543, 615
SacI	GAGCTC	1 cut(s)	870
SapI	GCTCTTC	2 cut(s)	216, 425
SaqAI	TTAA	1 cut(s)	675
SatI	GCNGC	5 cut(s)	24, 195, 267, 591, 803
Sau3AI	GATC	5 cut(s)	324, 358, 370, 457, 520
Sau96I	GGNCC	2 cut(s)	29, 656
SchI	GAGTC	1 cut(s)	787
ScrFI	CCNGG	2 cut(s)	176, 776
SduI	GDGCHC	2 cut(s)	76, 870
SetI	ASST	9 cut(s)	199, 437, 520, 535, 595, 615, 638, 777, 870
SfaNI	GCATC	4 cut(s)	285, 535, 789, 885
SfcI	CTRYAG	3 cut(s)	24, 109, 588
SinI	GGWCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	3 cut(s)	231, 543, 615
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
SphI	GCATGC	1 cut(s)	230
Sse9I	AATT	4 cut(s)	186, 276, 680, 695
SsiI	CCGC	6 cut(s)	82, 153, 158, 266, 501, 528
SspMI	CTAG	1 cut(s)	741
SstI	GAGCTC	1 cut(s)	870
StyD4I	CCNGG	2 cut(s)	174, 774
TaaI	ACNGT	2 cut(s)	36, 425
TaqI	TCGA	2 cut(s)	211, 282
TasI	AATT	4 cut(s)	186, 276, 680, 695
TatI	WGTACW	2 cut(s)	238, 760
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	3 cut(s)	179, 388, 604
Tru1I	TTAA	1 cut(s)	675
Tru9I	TTAA	1 cut(s)	675
TscAI	CASTG	2 cut(s)	39, 419
TseI	GCWGC	4 cut(s)	23, 194, 590, 802
TspDTI	ATGAA	7 cut(s)	182, 249, 335, 380, 420, 569, 693
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	2 cut(s)	39, 419
VneI	GTGCAC	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	656
XagI	CCTNNNNNAGG	1 cut(s)	617
XapI	RAATTY	1 cut(s)	186
XbaI	TCTAGA	1 cut(s)	740
XceI	RCATGY	2 cut(s)	230, 767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	39
XmnI	GAANNNNTTC	2 cut(s)	434, 450
XspI	CTAG	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.