Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010751

Physical Location & Seq

Genomic Coordinates Reverse (-)

9128601 .. 9131536

Gene Structure 2936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG116900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAAGAACACAAATTCAACGAACCTATTTATTTCGGTTCTTTTGCTGCTATTGTTTTCCTCCTCTGCCCAGAAAAACCAGGATTCTGAAATTTTTGCAGCTTCAAGAACGCTTCGACAAGAAGAAGAGCATGCTCATGAAGTACATTGTTCAAGAGAAAGAAGTAGGGCGGCATGGAAAATTATCGAGCAGTATTTGATGCCATTTGTGGAAAAAGAACGCTATGAGATCTCAAGTAAGTGTCGCCTTCATCCTGATAATGATCTATTTAGGGATCAGGAACGGCACAAGATTCATTTGGATATAAATGAATGGCAGTGTGGATACTGTAAGAAGAGCTTCCGTGCTGAAAAGTTTCTTGATCAGCATTTTGACAACAGACACTACAATCTTCTGAATGTAAGCGGAAGCAAGTGCTTAGCTGATCTATGCGGAGCTTTGCATTGTGATGTTGTAATGAATACCCAGTCAAGCAAAAAAAAATGCAATCCTGCAGCTACTGCAAGGAATCACCATCTATGTGAGGGTCTTGCTAATAGCTGTTTTCCTACCAATCAGGGTCCCTCAGCACGCCGTCTTAATGAATTGTTCTTGCACCAGTTCTGTCATTCTCACAGTTGCTTGGGGAAGCAGAAACCCTTTTCTAGAGGAGGACAGGTAAAGTTCCTGTTTCTTAGTGCAGTAGATCTTGCAAGCAAGATTGCAATATGGAAACTTTCATTTCCTGCACTGCATCAATGCTCTAATCATATCAAAATATTTGGGCTGTTTACACGCACATTGTCTTTTTACTATCTTGATATTTGGTGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

31.38

Weight (kDa)

8.97

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63280
fragaria_vesca	FvH4_5g07330 FvH4_5g07330 FvH4_5g07330
malus_domestica	MD06G1153500.v1.1 MD06G1157300.v1.1 MD14G1163900.v1.1
prunus_persica	Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1
pyrus_communis	pycom14g13660
rosa_chinensis	RchiOBHm_Chr7g0191231
rosa_laevigata	RLG00000004467
rosa_multiflora	Rmu_sc0004860.1_g000012
rosa_roxburghii	Rroxscaffold_3G00263960
rosa_rugosa	Rorug06G0509700
rosa_samantha	Rh7AG116900 Rh7CG121800 Rh7DG120300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	170, 405, 432
AclWI	GGATC	1 cut(s)	282
AcsI	RAATTY	2 cut(s)	13, 90
AfaI	GTAC	1 cut(s)	144
AgsI	TTSAA	3 cut(s)	18, 105, 153
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	6 cut(s)	101, 339, 422, 437, 497, 540
AluI	AGCT	6 cut(s)	101, 339, 422, 437, 497, 540
AlwI	GGATC	1 cut(s)	282
AlwNI	CAGNNNCTG	1 cut(s)	500
ApeKI	GCWGC	3 cut(s)	46, 98, 494
ApoI	RAATTY	2 cut(s)	13, 90
Asp700I	GAANNNNTTC	2 cut(s)	338, 354
AspS9I	GGNCC	1 cut(s)	560
AsuHPI	GGTGA	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	560
BbvCI	CCTCAGC	1 cut(s)	565
BbvI	GCAGC	3 cut(s)	33, 110, 506
BccI	CCATC	1 cut(s)	522
BceAI	ACGGC	2 cut(s)	299, 558
BciT130I	CCWGG	1 cut(s)	80
BciVI	GTATCC	1 cut(s)	317
BclI	TGATCA	1 cut(s)	361
BfaI	CTAG	1 cut(s)	645
BfmI	CTRYAG	1 cut(s)	492
BfuI	GTATCC	1 cut(s)	317
BglII	AGATCT	2 cut(s)	228, 685
BisI	GCNGC	4 cut(s)	47, 99, 171, 495
BlpI	GCTNAGC	1 cut(s)	418
BlsI	GCNGC	4 cut(s)	48, 100, 172, 496
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	560
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	2 cut(s)	561, 562
BmrFI	CCNGG	1 cut(s)	80
BmrI	ACTGGG	1 cut(s)	460
BmsI	GCATC	2 cut(s)	189, 742
BmuI	ACTGGG	1 cut(s)	460
Bpu10I	CCTNAGC	1 cut(s)	565
Bpu1102I	GCTNAGC	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	217
BsaBI	GATNNNNATC	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bse1I	ACTGG	2 cut(s)	466, 598
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	250
BseJI	GATNNNNATC	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	579
BseNI	ACTGG	2 cut(s)	466, 598
BseRI	GAGGAG	2 cut(s)	52, 663
BseXI	GCAGC	3 cut(s)	33, 110, 506
BsgI	GTGCAG	2 cut(s)	699, 711
BslFI	GGGAC	1 cut(s)	546
BsmFI	GGGAC	1 cut(s)	546
Bsp143I	GATC	6 cut(s)	228, 262, 274, 361, 424, 685
Bsp1720I	GCTNAGC	1 cut(s)	418
BspACI	CCGC	3 cut(s)	170, 405, 432
BspCNI	CTCAG	1 cut(s)	578
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	2 cut(s)	561, 562
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	1 cut(s)	282
BspQI	GCTCTTC	2 cut(s)	120, 329
BsrI	ACTGG	2 cut(s)	466, 598
BssMI	GATC	6 cut(s)	228, 262, 274, 361, 424, 685
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	2 cut(s)	329, 617
Bst6I	CTCTTC	2 cut(s)	120, 329
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	132, 571, 694
BstDEI	CTNAG	3 cut(s)	418, 565, 674
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	6 cut(s)	231, 265, 277, 364, 427, 688
BstMBI	GATC	6 cut(s)	228, 262, 274, 361, 424, 685
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	78
BstSFI	CTRYAG	1 cut(s)	492
BstV1I	GCAGC	3 cut(s)	33, 110, 506
BstX2I	RGATCY	2 cut(s)	228, 685
BstYI	RGATCY	2 cut(s)	228, 685
BsuI	GTATCC	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	250
BtsI	GCAGTG	2 cut(s)	323, 728
BtsIMutI	CAGTG	2 cut(s)	323, 728
Cac8I	GCNNGC	3 cut(s)	132, 571, 694
CaiI	CAGNNNCTG	1 cut(s)	500
CciI	TCATGA	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	560
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	3 cut(s)	131, 137, 174
CviJI	RGCY	7 cut(s)	101, 339, 422, 437, 497, 540, 766
CviKI_1	RGCY	7 cut(s)	101, 339, 422, 437, 497, 540, 766
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	3 cut(s)	418, 565, 674
DpnI	GATC	6 cut(s)	230, 264, 276, 363, 426, 687
DpnII	GATC	6 cut(s)	228, 262, 274, 361, 424, 685
Eam1104I	CTCTTC	2 cut(s)	120, 329
EarI	CTCTTC	2 cut(s)	120, 329
Eco47I	GGWCC	1 cut(s)	560
EcoO109I	RGGNCCY	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	78
FaeI	CATG	3 cut(s)	134, 140, 177
FaiI	YATR	9 cut(s)	132, 138, 175, 225, 305, 430, 520, 709, 750
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	3 cut(s)	130, 136, 173
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	4 cut(s)	47, 99, 171, 495
FokI	GGATG	1 cut(s)	237
Fsp4HI	GCNGC	4 cut(s)	47, 99, 171, 495
FspBI	CTAG	1 cut(s)	645
GluI	GCNGC	4 cut(s)	47, 99, 171, 495
Hin1II	CATG	3 cut(s)	134, 140, 177
HinfI	GANTC	3 cut(s)	83, 292, 508
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	1 cut(s)	771
Hpy188I	TCNGA	2 cut(s)	88, 396
Hpy188III	TCNNGA	8 cut(s)	105, 137, 153, 254, 278, 359, 645, 797
Hpy8I	GTNNAC	1 cut(s)	771
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	2 cut(s)	329, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	3 cut(s)	418, 565, 674
Hsp92II	CATG	3 cut(s)	134, 140, 177
KflI	GGGWCCC	1 cut(s)	560
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	6 cut(s)	228, 262, 274, 361, 424, 685
LguI	GCTCTTC	2 cut(s)	120, 329
LmnI	GCTCC	1 cut(s)	434
Lsp1109I	GCAGC	3 cut(s)	33, 110, 506
LweI	GCATC	2 cut(s)	189, 742
MaeI	CTAG	1 cut(s)	645
MalI	GATC	6 cut(s)	230, 264, 276, 363, 426, 687
MboI	GATC	6 cut(s)	228, 262, 274, 361, 424, 685
MboII	GAAGA	5 cut(s)	16, 134, 137, 346, 383
MflI	RGATCY	2 cut(s)	228, 685
MluCI	AATT	4 cut(s)	13, 90, 180, 584
MnlI	CCTC	6 cut(s)	70, 73, 517, 574, 641, 644
MroXI	GAANNNNTTC	2 cut(s)	338, 354
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	3 cut(s)	135, 447, 519
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	500
NdeII	GATC	6 cut(s)	228, 262, 274, 361, 424, 685
NlaIII	CATG	3 cut(s)	134, 140, 177
NlaIV	GGNNCC	2 cut(s)	561, 562
NspI	RCATGY	1 cut(s)	134
PaeI	GCATGC	1 cut(s)	134
PagI	TCATGA	1 cut(s)	136
PciSI	GCTCTTC	2 cut(s)	120, 329
PdmI	GAANNNNTTC	2 cut(s)	338, 354
PfeI	GAWTC	3 cut(s)	83, 292, 508
PkrI	GCNGC	4 cut(s)	48, 100, 172, 496
PpuMI	RGGWCCY	1 cut(s)	560
Psp5II	RGGWCCY	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	2 cut(s)	561, 562
PspPI	GGNCC	1 cut(s)	560
PspPPI	RGGWCCY	1 cut(s)	560
PstI	CTGCAG	1 cut(s)	496
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	2 cut(s)	228, 685
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
RseI	CAYNNNNRTG	3 cut(s)	135, 447, 519
SapI	GCTCTTC	2 cut(s)	120, 329
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	4 cut(s)	47, 99, 171, 495
Sau3AI	GATC	6 cut(s)	228, 262, 274, 361, 424, 685
Sau96I	GGNCC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	8 cut(s)	27, 103, 341, 424, 439, 499, 542, 660
SfaNI	GCATC	2 cut(s)	189, 742
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	560
SmiMI	CAYNNNNRTG	3 cut(s)	135, 447, 519
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
SphI	GCATGC	1 cut(s)	134
Sse9I	AATT	4 cut(s)	13, 90, 180, 584
SsiI	CCGC	3 cut(s)	170, 405, 432
SspI	AATATT	1 cut(s)	759
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	329, 617
TaqI	TCGA	2 cut(s)	115, 186
TasI	AATT	4 cut(s)	13, 90, 180, 584
TatI	WGTACW	1 cut(s)	142
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	83, 292, 508
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	2 cut(s)	323, 735
TseI	GCWGC	3 cut(s)	46, 98, 494
TspDTI	ATGAA	8 cut(s)	17, 153, 239, 284, 324, 473, 597, 708
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	2 cut(s)	323, 735
VpaK11BI	GGWCC	1 cut(s)	560
XapI	RAATTY	2 cut(s)	13, 90
XbaI	TCTAGA	1 cut(s)	644
XceI	RCATGY	1 cut(s)	134
XmnI	GAANNNNTTC	2 cut(s)	338, 354
XspI	CTAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.