RLG00000004467

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0010751
Physical Location & Seq
Forward (+)
59629746 .. 59631899
2154 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004467

Sequence Viewer

Length: 813 bp
ATGAAGAACACAACTTCAACGAGCCTATTTATTTCGATTCTTTTCCTGTTGTTGTTTTCCTCCTCTGCCCAGAAAAACCAGGATTCTGAAATTTTTGCAGCTTCTAGAACGCTTCGACAAGAAGAGCATGATCATGAAGTACATTGTTCAAGAGAAAGAAGTAGGGCGGCATGGAAAATTATCGAGCAGTATTTGATGCCATTTGTGGAAAAAGAACGCTATGAGATCTCAAGTAAGTGTCGCCTTCATCCTGATAATGATCTATTTAGGGATCAGGAACAGCACAAGATTCATTTGGATATAAATGAATGGCAGTGTGGATACTGTAAGAAGAGCTTCCGTGCTGAAAAGTTTCTTGATCAGCATTTTGACAACAGACACTACAATCTTCTGAATGTAAGCGGAAGCAGGTGCTTAGCTGATCTATGCAGAGCTTTGCATTGTGATGCTGTAATGAATACCCAGTCAAGCAAAAAAAAATGCAATCCTGCAGCTACTGCAAGGAATCACCACCTATGTGAGGGTCTTGCTAATAGCTGTTTTCCTACCAATCAAGGTCCCTCAGCACGCCGTCTTAATGAATTGTTCTTGCACCAGTTCTGTCATTCTCACACTTGCTCGGGGAAGCAGAAACCCTTTTCTAGAGGAGGACAGAAGCAAGTACATGTATTCTACCTGGCTATTTCCATACTGACTCTGATGCTGCTCCCTATTTTCTATGTGATACTTTATTTGCACCAAAGAGAGATGAGAACTGGTACCCAAGAGCTCAGGCGCATCCAGAAAGTCGGGCAGAAGAAGAAACCCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

31.5

Weight (kDa)

9.28

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 399
Acc36I ACCTGC 1 cut(s) 399
Acc65I GGTACC 1 cut(s) 758
AccB1I GGYRCC 1 cut(s) 758
AciI CCGC 2 cut(s) 167, 402
AclWI GGATC 1 cut(s) 279
AcsI RAATTY 1 cut(s) 90
AfaI GTAC 3 cut(s) 141, 663, 760
AfiI CCNNNNNNNGG 1 cut(s) 520
AflIII ACRYGT 1 cut(s) 664
AgsI TTSAA 2 cut(s) 18, 150
AjnI CCWGG 2 cut(s) 78, 675
AleI CACNNNNGTG 1 cut(s) 516
AluBI AGCT 7 cut(s) 101, 336, 419, 434, 494, 537, 769
AluI AGCT 7 cut(s) 101, 336, 419, 434, 494, 537, 769
Alw21I GWGCWC 1 cut(s) 771
AlwI GGATC 1 cut(s) 279
AlwNI CAGNNNCTG 1 cut(s) 497
Ama87I CYCGRG 1 cut(s) 619
ApeKI GCWGC 3 cut(s) 98, 491, 703
ApoI RAATTY 1 cut(s) 90
Asp700I GAANNNNTTC 2 cut(s) 335, 351
Asp718I GGTACC 1 cut(s) 758
AspLEI GCGC 1 cut(s) 777
AspS9I GGNCC 1 cut(s) 557
AsuHPI GGTGA 1 cut(s) 500
AvaI CYCGRG 1 cut(s) 619
AvaII GGWCC 1 cut(s) 557
BanI GGYRCC 1 cut(s) 758
BanII GRGCYC 1 cut(s) 771
Bbv12I GWGCWC 1 cut(s) 771
BbvCI CCTCAGC 1 cut(s) 562
BbvI GCAGC 3 cut(s) 110, 503, 690
BceAI ACGGC 1 cut(s) 555
BciT130I CCWGG 2 cut(s) 80, 677
BciVI GTATCC 1 cut(s) 314
BclI TGATCA 2 cut(s) 130, 358
BfaI CTAG 2 cut(s) 105, 642
BfmI CTRYAG 1 cut(s) 489
BfuAI ACCTGC 1 cut(s) 399
BfuI GTATCC 1 cut(s) 314
BglII AGATCT 1 cut(s) 225
BisI GCNGC 4 cut(s) 99, 168, 492, 704
BlpI GCTNAGC 1 cut(s) 415
BlsI GCNGC 4 cut(s) 100, 169, 493, 705
Bme1390I CCNGG 2 cut(s) 80, 677
Bme18I GGWCC 1 cut(s) 557
BmeT110I CYCGRG 1 cut(s) 619
BmgT120I GGNCC 1 cut(s) 557
BmiI GGNNCC 2 cut(s) 559, 760
BmrFI CCNGG 2 cut(s) 80, 677
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 4 cut(s) 186, 436, 690, 786
BmuI ACTGGG 1 cut(s) 457
Bpu10I CCTNAGC 2 cut(s) 562, 770
Bpu1102I GCTNAGC 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 214
BsaBI GATNNNNATC 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 520
Bse1I ACTGG 3 cut(s) 463, 595, 760
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 2 cut(s) 80, 677
BseGI GGATG 2 cut(s) 247, 777
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 520
BseMII CTCAG 2 cut(s) 576, 784
BseNI ACTGG 3 cut(s) 463, 595, 760
BseRI GAGGAG 2 cut(s) 52, 660
BseXI GCAGC 3 cut(s) 110, 503, 690
BshNI GGYRCC 1 cut(s) 758
BsiHKAI GWGCWC 1 cut(s) 771
BsiHKCI CYCGRG 1 cut(s) 619
BslFI GGGAC 1 cut(s) 543
BslI CCNNNNNNNGG 1 cut(s) 520
BsmFI GGGAC 1 cut(s) 543
BsoBI CYCGRG 1 cut(s) 619
Bsp1286I GDGCHC 1 cut(s) 771
Bsp143I GATC 6 cut(s) 130, 225, 259, 271, 358, 421
Bsp1720I GCTNAGC 1 cut(s) 415
BspACI CCGC 2 cut(s) 167, 402
BspCNI CTCAG 2 cut(s) 575, 783
BspHI TCATGA 1 cut(s) 133
BspLI GGNNCC 2 cut(s) 559, 760
BspMAI CTGCAG 1 cut(s) 493
BspMI ACCTGC 1 cut(s) 399
BspPI GGATC 1 cut(s) 279
BspQI GCTCTTC 2 cut(s) 117, 326
BspT107I GGYRCC 1 cut(s) 758
BsrI ACTGG 3 cut(s) 463, 595, 760
BssMI GATC 6 cut(s) 130, 225, 259, 271, 358, 421
Bst2UI CCWGG 2 cut(s) 80, 677
Bst4CI ACNGT 1 cut(s) 326
Bst6I CTCTTC 2 cut(s) 117, 326
BstAPI GCANNNNNTGC 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 568
BstDEI CTNAG 3 cut(s) 415, 562, 770
BstENI CCTNNNNNAGG 1 cut(s) 518
BstF5I GGATG 2 cut(s) 247, 777
BstHHI GCGC 1 cut(s) 777
BstKTI GATC 6 cut(s) 133, 228, 262, 274, 361, 424
BstMBI GATC 6 cut(s) 130, 225, 259, 271, 358, 421
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstNI CCWGG 2 cut(s) 80, 677
BstNSI RCATGY 1 cut(s) 668
BstSCI CCNGG 2 cut(s) 78, 675
BstSFI CTRYAG 1 cut(s) 489
BstV1I GCAGC 3 cut(s) 110, 503, 690
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BsuI GTATCC 1 cut(s) 314
BtsCI GGATG 2 cut(s) 247, 777
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 320
BveI ACCTGC 1 cut(s) 399
Cac8I GCNNGC 1 cut(s) 568
CaiI CAGNNNCTG 1 cut(s) 497
CciI TCATGA 1 cut(s) 133
CfoI GCGC 1 cut(s) 777
Cfr13I GGNCC 1 cut(s) 557
Csp6I GTAC 3 cut(s) 140, 662, 759
CviAII CATG 4 cut(s) 128, 134, 171, 665
CviJI RGCY 9 cut(s) 24, 101, 336, 419, 434, 494, 537, 680, 769
CviKI_1 RGCY 9 cut(s) 24, 101, 336, 419, 434, 494, 537, 680, 769
CviQI GTAC 3 cut(s) 140, 662, 759
DdeI CTNAG 3 cut(s) 415, 562, 770
DpnI GATC 6 cut(s) 132, 227, 261, 273, 360, 423
DpnII GATC 6 cut(s) 130, 225, 259, 271, 358, 421
Eam1104I CTCTTC 2 cut(s) 117, 326
EarI CTCTTC 2 cut(s) 117, 326
Ecl136II GAGCTC 1 cut(s) 769
Eco24I GRGCYC 1 cut(s) 771
Eco47I GGWCC 1 cut(s) 557
Eco53kI GAGCTC 1 cut(s) 769
Eco88I CYCGRG 1 cut(s) 619
EcoICRI GAGCTC 1 cut(s) 769
EcoNI CCTNNNNNAGG 1 cut(s) 518
EcoO109I RGGNCCY 1 cut(s) 557
EcoRII CCWGG 2 cut(s) 78, 675
EcoT38I GRGCYC 1 cut(s) 771
FaeI CATG 4 cut(s) 131, 137, 174, 668
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FaqI GGGAC 1 cut(s) 543
FatI CATG 4 cut(s) 127, 133, 170, 664
FbaI TGATCA 2 cut(s) 130, 358
Fnu4HI GCNGC 4 cut(s) 99, 168, 492, 704
FokI GGATG 2 cut(s) 234, 764
FriOI GRGCYC 1 cut(s) 771
Fsp4HI GCNGC 4 cut(s) 99, 168, 492, 704
FspBI CTAG 2 cut(s) 105, 642
GlaI GCGC 1 cut(s) 776
GluI GCNGC 4 cut(s) 99, 168, 492, 704
HhaI GCGC 1 cut(s) 777
Hin1II CATG 4 cut(s) 131, 137, 174, 668
Hin6I GCGC 1 cut(s) 775
HinP1I GCGC 1 cut(s) 775
HinfI GANTC 5 cut(s) 37, 83, 289, 505, 694
HphI GGTGA 1 cut(s) 500
Hpy188I TCNGA 3 cut(s) 88, 393, 699
Hpy188III TCNNGA 8 cut(s) 105, 134, 150, 251, 275, 356, 642, 781
HpyAV CCTTC 1 cut(s) 254
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4V TGCA 8 cut(s) 98, 429, 439, 483, 491, 500, 592, 736
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpyF3I CTNAG 3 cut(s) 415, 562, 770
Hsp92II CATG 4 cut(s) 131, 137, 174, 668
HspAI GCGC 1 cut(s) 775
KpnI GGTACC 1 cut(s) 762
Ksp22I TGATCA 2 cut(s) 130, 358
Kzo9I GATC 6 cut(s) 130, 225, 259, 271, 358, 421
LguI GCTCTTC 2 cut(s) 117, 326
LmnI GCTCC 1 cut(s) 711
Lsp1109I GCAGC 3 cut(s) 110, 503, 690
LweI GCATC 4 cut(s) 186, 436, 690, 786
MaeI CTAG 2 cut(s) 105, 642
MalI GATC 6 cut(s) 132, 227, 261, 273, 360, 423
MboI GATC 6 cut(s) 130, 225, 259, 271, 358, 421
MboII GAAGA 6 cut(s) 16, 134, 343, 380, 808, 811
MflI RGATCY 1 cut(s) 225
MhlI GDGCHC 1 cut(s) 771
MluCI AATT 3 cut(s) 90, 177, 581
MlyI GAGTC 1 cut(s) 688
MnlI CCTC 6 cut(s) 70, 73, 514, 571, 638, 641
MroXI GAANNNNTTC 2 cut(s) 335, 351
MseI TTAA 1 cut(s) 576
MslI CAYNNNNRTG 3 cut(s) 132, 444, 516
MspR9I CCNGG 2 cut(s) 80, 677
MvaI CCWGG 2 cut(s) 80, 677
MwoI GCNNNNNNNGC 1 cut(s) 497
NdeII GATC 6 cut(s) 130, 225, 259, 271, 358, 421
NlaIII CATG 4 cut(s) 131, 137, 174, 668
NlaIV GGNNCC 2 cut(s) 559, 760
NspI RCATGY 1 cut(s) 668
OliI CACNNNNGTG 1 cut(s) 516
PagI TCATGA 1 cut(s) 133
PaqCI CACCTGC 1 cut(s) 399
PciI ACATGT 1 cut(s) 664
PciSI GCTCTTC 2 cut(s) 117, 326
PdmI GAANNNNTTC 2 cut(s) 335, 351
PfeI GAWTC 4 cut(s) 37, 83, 289, 505
PkrI GCNGC 4 cut(s) 100, 169, 493, 705
PleI GAGTC 1 cut(s) 688
PpsI GAGTC 1 cut(s) 688
PpuMI RGGWCCY 1 cut(s) 557
PscI ACATGT 1 cut(s) 664
Psp124BI GAGCTC 1 cut(s) 771
Psp5II RGGWCCY 1 cut(s) 557
Psp6I CCWGG 2 cut(s) 78, 675
PspGI CCWGG 2 cut(s) 78, 675
PspN4I GGNNCC 2 cut(s) 559, 760
PspPI GGNCC 1 cut(s) 557
PspPPI RGGWCCY 1 cut(s) 557
PstI CTGCAG 1 cut(s) 493
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 1 cut(s) 225
RsaI GTAC 3 cut(s) 141, 663, 760
RsaNI GTAC 3 cut(s) 140, 662, 759
RseI CAYNNNNRTG 3 cut(s) 132, 444, 516
SacI GAGCTC 1 cut(s) 771
SapI GCTCTTC 2 cut(s) 117, 326
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 4 cut(s) 99, 168, 492, 704
Sau3AI GATC 6 cut(s) 130, 225, 259, 271, 358, 421
Sau96I GGNCC 1 cut(s) 557
SchI GAGTC 1 cut(s) 688
ScrFI CCNGG 2 cut(s) 80, 677
SduI GDGCHC 1 cut(s) 771
SfaNI GCATC 4 cut(s) 186, 436, 690, 786
SfcI CTRYAG 1 cut(s) 489
SinI GGWCC 1 cut(s) 557
SmiMI CAYNNNNRTG 3 cut(s) 132, 444, 516
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 3 cut(s) 90, 177, 581
SsiI CCGC 2 cut(s) 167, 402
SspMI CTAG 2 cut(s) 105, 642
SstI GAGCTC 1 cut(s) 771
StyD4I CCNGG 2 cut(s) 78, 675
TaaI ACNGT 1 cut(s) 326
TaqI TCGA 3 cut(s) 35, 115, 183
TasI AATT 3 cut(s) 90, 177, 581
TatI WGTACW 2 cut(s) 139, 661
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 4 cut(s) 37, 83, 289, 505
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 1 cut(s) 320
TseI GCWGC 3 cut(s) 98, 491, 703
TspDTI ATGAA 7 cut(s) 17, 150, 236, 281, 321, 470, 594
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 1 cut(s) 320
VpaK11BI GGWCC 1 cut(s) 557
XagI CCTNNNNNAGG 1 cut(s) 518
XapI RAATTY 1 cut(s) 90
XbaI TCTAGA 2 cut(s) 104, 641
XceI RCATGY 1 cut(s) 668
XmnI GAANNNNTTC 2 cut(s) 335, 351
XspI CTAG 2 cut(s) 105, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.