Rorug06G0509700

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010751
Physical Location & Seq
Reverse (-)
62412903 .. 62420792
7890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0509700.1

Sequence Viewer

Length: 1113 bp
ATGAAAGTTGTTAAGCATGATGAGAGGAAGAGGAGCAGCCCGGCCCCGACACCATTGGCGGTGGTCGGCGGCGGCTCTGCCCTAACTCCGGCGTCCCTTTTCCGGCCACCTCCGGGGTGGCTTTGTGTGGTCATGGGCGAAGATCCGACCGTTGGATCTTCGTATAAATGCAAAACAGTGATTAGGGAGGCGATTCGTGAGAATCCGTCCGTCGGATTTTCGTATAAATTTGTGAAGATGTTAGTGATTGACGGTCTTCCTTGGGTGAACGATTTCGGTGTGTATTGTGTTGAATTGAAGACGCAGCGGGAATATCGAGCGGGTAATCCTACAGGTCAGGAGAATCAGGACGGTGATCGTGCGGGTATCACGATCGGGTCTGGAATTGAGTGGTTTACATCAACATCAGAAAAAGCGAAAGAAGAGAGAGGAAAGAAGAGAGGAAAGGAGAAGATCTCGGTGACAATATATCGGTTGCAAGTTGTCAATATTGTTGGCTGGAATATCTACAGAAGAATAATAGAGATTCAAATCGATTCTGTGGGTTCTACAGTTTCAGATCCGGGTAACTCACTGCAAGAACTTCAAGGTTTTCTGGATTCTATGCAAAACAGTATATGTGTGATTTTCATCCCGCTGTTCCTCTGCATATTGCTTACAGCTATTTTAACGTCGAGTCCTTCTATAGAGCTTTGGAACAGTGTGGACTCAAGTTGTTTTACTATTTCAGATTCAGTTATGGCGTCTAATATGAGATACAAAAGAGGAAAAAGATTGTTACAACGAAATGATGGTGAAAGTCTTAATCATGAAGCACAGATACAAGAGGCAAACAATGGTGAATTTTTTTGTGCCATGACAGCCCAAACTGATAGTGGTGGTATTAGTACAGACGCAATGCATCAAAGAAGATCAAAAAGGGCAAGACGTGTGCCTGAGGCTGCAGTAACAGAGAAAAACTACAGTTCTGAACACTTGAATAGAAGATTTCAAACTGCTGAACAAAACAACACTCTGCTGCTGAATGAAAGTTCAGTTCACTATGAAAATCTAGATATGATTGTTCGCGCTCATTTGGTCAGGCATCATATCAGAAAAGTAGAAAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

370

Amino Acids

41.44

Weight (kDa)

8.74

Isoelectric Point (pI)

51.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 320
AccII CGCG 1 cut(s) 1068
AciI CCGC 7 cut(s) 59, 69, 72, 307, 320, 362, 635
AclWI GGATC 3 cut(s) 137, 163, 554
AcoI YGGCCR 1 cut(s) 104
AcsI RAATTY 2 cut(s) 227, 842
AcyI GRCGYC 2 cut(s) 92, 743
AfaI GTAC 1 cut(s) 889
AfiI CCNNNNNNNGG 5 cut(s) 88, 102, 113, 152, 212
AflIII ACRYGT 1 cut(s) 928
AgsI TTSAA 6 cut(s) 293, 298, 530, 587, 979, 992
AjiI CACGTC 1 cut(s) 929
AluBI AGCT 2 cut(s) 662, 691
AluI AGCT 2 cut(s) 662, 691
AlwI GGATC 3 cut(s) 137, 163, 554
AoxI GGCC 2 cut(s) 42, 104
ApeKI GCWGC 4 cut(s) 36, 304, 941, 1018
ApoI RAATTY 2 cut(s) 227, 842
Asp700I GAANNNNTTC 1 cut(s) 272
AspLEI GCGC 1 cut(s) 1070
AspS9I GGNCC 1 cut(s) 43
AsuC2I CCSGG 3 cut(s) 41, 114, 564
AsuHPI GGTGA 5 cut(s) 277, 365, 472, 806, 851
AxyI CCTNAGG 1 cut(s) 936
BarI GAAGNNNNNNTAC 2 cut(s) 804, 836
BbsI GAAGAC 2 cut(s) 248, 305
BbvI GCAGC 4 cut(s) 48, 316, 928, 1005
BccI CCATC 1 cut(s) 785
BcnI CCSGG 3 cut(s) 41, 114, 564
BfaI CTAG 1 cut(s) 1052
BfmI CTRYAG 6 cut(s) 330, 508, 549, 684, 942, 961
BglII AGATCT 1 cut(s) 453
BisI GCNGC 6 cut(s) 37, 70, 73, 305, 942, 1019
BlsI GCNGC 6 cut(s) 38, 71, 74, 306, 943, 1020
Bme1390I CCNGG 3 cut(s) 41, 114, 564
BmgBI CACGTC 1 cut(s) 929
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 3 cut(s) 41, 114, 564
BmsI GCATC 2 cut(s) 910, 1093
BpiI GAAGAC 2 cut(s) 248, 305
BplI GAGNNNNNCTC 2 cut(s) 440, 472
BpuEI CTTGAG 1 cut(s) 694
BpuMI CCSGG 3 cut(s) 41, 114, 564
Bsa29I ATCGAT 1 cut(s) 534
BsaBI GATNNNNATC 2 cut(s) 530, 629
BsaHI GRCGYC 2 cut(s) 92, 743
BsaJI CCNNGG 2 cut(s) 113, 260
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 102, 113, 152, 212
Bse21I CCTNAGG 1 cut(s) 936
Bse3DI GCAATG 1 cut(s) 903
Bse8I GATNNNNATC 2 cut(s) 530, 629
BseCI ATCGAT 1 cut(s) 534
BseDI CCNNGG 2 cut(s) 113, 260
BseGI GGATG 1 cut(s) 630
BseJI GATNNNNATC 2 cut(s) 530, 629
BseLI CCNNNNNNNGG 5 cut(s) 88, 102, 113, 152, 212
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 1 cut(s) 927
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 4 cut(s) 48, 316, 928, 1005
Bsh1236I CGCG 1 cut(s) 1068
Bsh1285I CGRYCG 2 cut(s) 150, 375
BshFI GGCC 2 cut(s) 44, 106
BshVI ATCGAT 1 cut(s) 534
BsiEI CGRYCG 2 cut(s) 150, 375
BsiSI CCGG 5 cut(s) 41, 89, 103, 113, 563
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 5 cut(s) 88, 102, 113, 152, 212
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 2 cut(s) 44, 106
Bsp143I GATC 7 cut(s) 142, 155, 355, 372, 453, 559, 911
BspACI CCGC 7 cut(s) 59, 69, 72, 307, 320, 362, 635
BspANI GGCC 2 cut(s) 44, 106
BspCNI CTCAG 1 cut(s) 928
BspDI ATCGAT 1 cut(s) 534
BspFNI CGCG 1 cut(s) 1068
BspHI TCATGA 1 cut(s) 808
BspLI GGNNCC 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 946
BspPI GGATC 3 cut(s) 137, 163, 554
BsrBI CCGCTC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 903
BssECI CCNNGG 2 cut(s) 113, 260
BssMI GATC 7 cut(s) 142, 155, 355, 372, 453, 559, 911
BssNI GRCGYC 2 cut(s) 92, 743
BssT1I CCWWGG 1 cut(s) 260
Bst4CI ACNGT 8 cut(s) 151, 178, 254, 353, 553, 614, 701, 965
Bst6I CTCTTC 3 cut(s) 23, 417, 431
BstACI GRCGYC 2 cut(s) 92, 743
BstDEI CTNAG 1 cut(s) 936
BstF5I GGATG 1 cut(s) 630
BstFNI CGCG 1 cut(s) 1068
BstHHI GCGC 1 cut(s) 1070
BstKTI GATC 7 cut(s) 145, 158, 358, 375, 456, 562, 914
BstMBI GATC 7 cut(s) 142, 155, 355, 372, 453, 559, 911
BstMCI CGRYCG 2 cut(s) 150, 375
BstMWI GCNNNNNNNGC 1 cut(s) 860
BstSCI CCNGG 3 cut(s) 39, 112, 562
BstSFI CTRYAG 6 cut(s) 330, 508, 549, 684, 942, 961
BstUI CGCG 1 cut(s) 1068
BstV1I GCAGC 4 cut(s) 48, 316, 928, 1005
BstV2I GAAGAC 2 cut(s) 248, 305
BstX2I RGATCY 4 cut(s) 142, 155, 453, 559
BstYI RGATCY 4 cut(s) 142, 155, 453, 559
Bsu15I ATCGAT 1 cut(s) 534
Bsu36I CCTNAGG 1 cut(s) 936
BsuRI GGCC 2 cut(s) 44, 106
BsuTUI ATCGAT 1 cut(s) 534
BtrI CACGTC 1 cut(s) 929
BtsCI GGATG 1 cut(s) 630
BtsI GCAGTG 1 cut(s) 572
BtsIMutI CAGTG 3 cut(s) 183, 572, 706
CciI TCATGA 1 cut(s) 808
CfoI GCGC 1 cut(s) 1070
Cfr13I GGNCC 1 cut(s) 43
ClaI ATCGAT 1 cut(s) 534
CseI GACGC 4 cut(s) 81, 310, 732, 902
Csp6I GTAC 1 cut(s) 888
CviAII CATG 4 cut(s) 17, 133, 809, 856
CviQI GTAC 1 cut(s) 888
DdeI CTNAG 1 cut(s) 936
DpnI GATC 7 cut(s) 144, 157, 357, 374, 455, 561, 913
DpnII GATC 7 cut(s) 142, 155, 355, 372, 453, 559, 911
EaeI YGGCCR 1 cut(s) 104
Eam1104I CTCTTC 3 cut(s) 23, 417, 431
EarI CTCTTC 3 cut(s) 23, 417, 431
Eco130I CCWWGG 1 cut(s) 260
Eco81I CCTNAGG 1 cut(s) 936
EcoT14I CCWWGG 1 cut(s) 260
EcoT22I ATGCAT 1 cut(s) 903
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 4 cut(s) 20, 136, 812, 859
FaqI GGGAC 1 cut(s) 79
FatI CATG 4 cut(s) 16, 132, 808, 855
FauI CCCGC 4 cut(s) 300, 313, 355, 642
Fnu4HI GCNGC 6 cut(s) 37, 70, 73, 305, 942, 1019
FokI GGATG 1 cut(s) 617
Fsp4HI GCNGC 6 cut(s) 37, 70, 73, 305, 942, 1019
FspBI CTAG 1 cut(s) 1052
GlaI GCGC 1 cut(s) 1069
GluI GCNGC 6 cut(s) 37, 70, 73, 305, 942, 1019
HaeIII GGCC 2 cut(s) 44, 106
HapII CCGG 5 cut(s) 41, 89, 103, 113, 563
HgaI GACGC 4 cut(s) 81, 310, 732, 902
HhaI GCGC 1 cut(s) 1070
Hin1I GRCGYC 2 cut(s) 92, 743
Hin1II CATG 4 cut(s) 20, 136, 812, 859
Hin6I GCGC 1 cut(s) 1068
HinP1I GCGC 1 cut(s) 1068
HinfI GANTC 9 cut(s) 193, 202, 343, 526, 536, 599, 676, 707, 731
HpaII CCGG 5 cut(s) 41, 89, 103, 113, 563
HphI GGTGA 5 cut(s) 277, 365, 472, 806, 851
Hpy166II GTNNAC 4 cut(s) 268, 396, 706, 1039
Hpy188I TCNGA 7 cut(s) 147, 215, 409, 559, 730, 970, 1094
Hpy188III TCNNGA 8 cut(s) 197, 338, 347, 370, 381, 596, 809, 1052
Hpy8I GTNNAC 4 cut(s) 268, 396, 706, 1039
Hpy99I CGWCG 2 cut(s) 215, 676
HpyAV CCTTC 1 cut(s) 690
HpyCH4III ACNGT 8 cut(s) 151, 178, 254, 353, 553, 614, 701, 965
HpyCH4IV ACGT 2 cut(s) 671, 928
HpyCH4V TGCA 7 cut(s) 171, 478, 577, 607, 648, 901, 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 860
HpyF3I CTNAG 1 cut(s) 936
HpySE526I ACGT 2 cut(s) 671, 928
Hsp92I GRCGYC 2 cut(s) 92, 743
Hsp92II CATG 4 cut(s) 20, 136, 812, 859
HspAI GCGC 1 cut(s) 1068
Kzo9I GATC 7 cut(s) 142, 155, 355, 372, 453, 559, 911
LmnI GCTCC 1 cut(s) 33
Lsp1109I GCAGC 4 cut(s) 48, 316, 928, 1005
LweI GCATC 2 cut(s) 910, 1093
MaeI CTAG 1 cut(s) 1052
MaeII ACGT 2 cut(s) 671, 928
MaeIII GTNAC 4 cut(s) 460, 566, 777, 946
MalI GATC 7 cut(s) 144, 157, 357, 374, 455, 561, 913
MbiI CCGCTC 1 cut(s) 320
MboI GATC 7 cut(s) 142, 155, 355, 372, 453, 559, 911
MflI RGATCY 4 cut(s) 142, 155, 453, 559
MluCI AATT 4 cut(s) 227, 293, 384, 842
MlyI GAGTC 2 cut(s) 685, 701
MmeI TCCRAC 3 cut(s) 133, 170, 193
Mph1103I ATGCAT 1 cut(s) 903
MroXI GAANNNNTTC 1 cut(s) 272
MseI TTAA 3 cut(s) 12, 668, 804
MspA1I CMGCKG 2 cut(s) 307, 637
MspI CCGG 5 cut(s) 41, 89, 103, 113, 563
MspR9I CCNGG 3 cut(s) 41, 114, 564
MvnI CGCG 1 cut(s) 1068
MwoI GCNNNNNNNGC 1 cut(s) 860
NciI CCSGG 3 cut(s) 41, 114, 564
NdeII GATC 7 cut(s) 142, 155, 355, 372, 453, 559, 911
NlaIII CATG 4 cut(s) 20, 136, 812, 859
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 460
NsiI ATGCAT 1 cut(s) 903
PagI TCATGA 1 cut(s) 808
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 7 cut(s) 193, 202, 343, 526, 536, 599, 731
PkrI GCNGC 6 cut(s) 38, 71, 74, 306, 943, 1020
Ple19I CGATCG 1 cut(s) 375
PleI GAGTC 2 cut(s) 684, 701
PpsI GAGTC 2 cut(s) 684, 701
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 43
PstI CTGCAG 1 cut(s) 946
PsuI RGATCY 4 cut(s) 142, 155, 453, 559
PvuI CGATCG 1 cut(s) 375
RsaI GTAC 1 cut(s) 889
RsaNI GTAC 1 cut(s) 888
SaqAI TTAA 3 cut(s) 12, 668, 804
SatI GCNGC 6 cut(s) 37, 70, 73, 305, 942, 1019
Sau3AI GATC 7 cut(s) 142, 155, 355, 372, 453, 559, 911
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 2 cut(s) 685, 701
ScrFI CCNGG 3 cut(s) 41, 114, 564
SetI ASST 7 cut(s) 112, 337, 592, 664, 674, 693, 931
SfaNI GCATC 2 cut(s) 910, 1093
SfcI CTRYAG 6 cut(s) 330, 508, 549, 684, 942, 961
SmlI CTYRAG 1 cut(s) 709
SmoI CTYRAG 1 cut(s) 709
Sse9I AATT 4 cut(s) 227, 293, 384, 842
SsiI CCGC 7 cut(s) 59, 69, 72, 307, 320, 362, 635
SspI AATATT 1 cut(s) 490
SspMI CTAG 1 cut(s) 1052
StyD4I CCNGG 3 cut(s) 39, 112, 562
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 8 cut(s) 151, 178, 254, 353, 553, 614, 701, 965
TaiI ACGT 2 cut(s) 674, 931
TaqI TCGA 3 cut(s) 316, 534, 674
TasI AATT 4 cut(s) 227, 293, 384, 842
TatI WGTACW 1 cut(s) 887
TauI GCSGC 2 cut(s) 72, 75
TfiI GAWTC 7 cut(s) 193, 202, 343, 526, 536, 599, 731
Tru1I TTAA 3 cut(s) 12, 668, 804
Tru9I TTAA 3 cut(s) 12, 668, 804
TscAI CASTG 3 cut(s) 183, 579, 706
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 4 cut(s) 36, 304, 941, 1018
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 5 cut(s) 17, 619, 825, 1041, 1059
TspGWI ACGGA 2 cut(s) 195, 199
TspRI CASTG 3 cut(s) 183, 579, 706
XapI RAATTY 2 cut(s) 227, 842
XbaI TCTAGA 1 cut(s) 1051
XcmI CCANNNNNNNNNTGG 2 cut(s) 114, 872
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 1 cut(s) 1052
Zsp2I ATGCAT 1 cut(s) 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.