Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010751

Physical Location & Seq

Genomic Coordinates Reverse (-)

10029221 .. 10032530

Gene Structure 3310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17087

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAAGAACACAACTTCAACGAACCTATTTATTTCGATCCTTTTCCTGTTATTGTTTTCCTCCTCTGCCCAGAAAAACCAGGATTCTGAAATTTTTGCAGCTTCAAGAACGCTTCGACAAGAAGAAGAGCATGCTCATGAAGTACATTGTTCAAGAGAAAGAAGTAGGGCGGCATGGAAAATTAACGAGCAGTATTTGATGTCATTTGTGGAAAAAGAACGCTATGAGATCTCAAGTAAGTGTCGCCTTCATCCTGATAATGATCTATTTAGGGATCAGGAACGGCACAAGATTCATTTGGATATAAATGAATGGCAGTGTGGATACTGTAAGAAGAGCTTCCGTGCTGAAAAGTTTCTTGATCAGCATTTTGACAACAGACACTACAATCTTCTGAATGTAAGCGGAAGCAAGTGCTTAGCTGATCTATGCGGAGCTTTGCATTGTGATGCTGTAATGAATACCCAGTCAAGCAAAAAAAAATGCAATCCTGCAGCTACTGCAAGGAATCACCACCTATGTGAGGGTCTTGATAATAGCTGTTTTCCTACCAACCAGGGTCCCTCAGCACGCCGTCTTAATGAATTGTTTTTGCACCAGTTCTGTCATTCTCACACTTGCTCGGGGAAGCAGAAACCCTTTTCTAGAGGAGGACAGAAGCAAGTACATGTGTTCTACCTGGCTATTTCCATACTGACTCTGATGCTGCTCCCTATTTTCTATGTGATACTTTATTTGCACCAAAGAGAGATGAGAACTGGTACCCAAGAGCTCAGGCGCATCCAGAAAGTCGGGCAGAAGAAGAAACCCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

31.55

Weight (kDa)

9.2

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63280
fragaria_vesca	FvH4_5g07330 FvH4_5g07330 FvH4_5g07330
malus_domestica	MD06G1153500.v1.1 MD06G1157300.v1.1 MD14G1163900.v1.1
prunus_persica	Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1
pyrus_communis	pycom14g13660
rosa_chinensis	RchiOBHm_Chr7g0191231
rosa_laevigata	RLG00000004467
rosa_multiflora	Rmu_sc0004860.1_g000012
rosa_roxburghii	Rroxscaffold_3G00263960
rosa_rugosa	Rorug06G0509700
rosa_samantha	Rh7AG116900 Rh7CG121800 Rh7DG120300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	761
AccB1I	GGYRCC	1 cut(s)	761
AciI	CCGC	3 cut(s)	170, 405, 432
AclWI	GGATC	2 cut(s)	31, 282
AcsI	RAATTY	1 cut(s)	90
AfaI	GTAC	3 cut(s)	144, 666, 763
AfiI	CCNNNNNNNGG	1 cut(s)	523
AflIII	ACRYGT	1 cut(s)	667
AgsI	TTSAA	3 cut(s)	18, 105, 153
AjnI	CCWGG	3 cut(s)	78, 555, 678
AleI	CACNNNNGTG	1 cut(s)	519
AluBI	AGCT	7 cut(s)	101, 339, 422, 437, 497, 540, 772
AluI	AGCT	7 cut(s)	101, 339, 422, 437, 497, 540, 772
Alw21I	GWGCWC	1 cut(s)	774
AlwI	GGATC	2 cut(s)	31, 282
AlwNI	CAGNNNCTG	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	622
ApeKI	GCWGC	3 cut(s)	98, 494, 706
ApoI	RAATTY	1 cut(s)	90
Asp700I	GAANNNNTTC	2 cut(s)	338, 354
Asp718I	GGTACC	1 cut(s)	761
AspLEI	GCGC	1 cut(s)	780
AspS9I	GGNCC	1 cut(s)	560
AsuHPI	GGTGA	1 cut(s)	503
AvaI	CYCGRG	1 cut(s)	622
AvaII	GGWCC	1 cut(s)	560
BanI	GGYRCC	1 cut(s)	761
BanII	GRGCYC	1 cut(s)	774
Bbv12I	GWGCWC	1 cut(s)	774
BbvCI	CCTCAGC	1 cut(s)	565
BbvI	GCAGC	3 cut(s)	110, 506, 693
BceAI	ACGGC	2 cut(s)	299, 558
BciT130I	CCWGG	3 cut(s)	80, 557, 680
BciVI	GTATCC	1 cut(s)	317
BclI	TGATCA	1 cut(s)	361
BfaI	CTAG	1 cut(s)	645
BfmI	CTRYAG	1 cut(s)	492
BfuI	GTATCC	1 cut(s)	317
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	4 cut(s)	99, 171, 495, 707
BlpI	GCTNAGC	1 cut(s)	418
BlsI	GCNGC	4 cut(s)	100, 172, 496, 708
Bme1390I	CCNGG	3 cut(s)	80, 557, 680
Bme18I	GGWCC	1 cut(s)	560
BmeT110I	CYCGRG	1 cut(s)	622
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	3 cut(s)	561, 562, 763
BmrFI	CCNGG	3 cut(s)	80, 557, 680
BmrI	ACTGGG	1 cut(s)	460
BmsI	GCATC	3 cut(s)	439, 693, 789
BmuI	ACTGGG	1 cut(s)	460
Bpu10I	CCTNAGC	2 cut(s)	565, 773
Bpu1102I	GCTNAGC	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	217
BsaBI	GATNNNNATC	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse1I	ACTGG	3 cut(s)	466, 598, 763
Bse8I	GATNNNNATC	1 cut(s)	261
BseBI	CCWGG	3 cut(s)	80, 557, 680
BseDI	CCNNGG	1 cut(s)	556
BseGI	GGATG	2 cut(s)	250, 780
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMII	CTCAG	2 cut(s)	579, 787
BseNI	ACTGG	3 cut(s)	466, 598, 763
BseRI	GAGGAG	2 cut(s)	52, 663
BseXI	GCAGC	3 cut(s)	110, 506, 693
BshNI	GGYRCC	1 cut(s)	761
BsiHKAI	GWGCWC	1 cut(s)	774
BsiHKCI	CYCGRG	1 cut(s)	622
BslFI	GGGAC	1 cut(s)	546
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	546
BsoBI	CYCGRG	1 cut(s)	622
Bsp1286I	GDGCHC	1 cut(s)	774
Bsp143I	GATC	6 cut(s)	36, 228, 262, 274, 361, 424
Bsp1720I	GCTNAGC	1 cut(s)	418
BspACI	CCGC	3 cut(s)	170, 405, 432
BspCNI	CTCAG	2 cut(s)	578, 786
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	3 cut(s)	561, 562, 763
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	2 cut(s)	31, 282
BspQI	GCTCTTC	2 cut(s)	120, 329
BspT107I	GGYRCC	1 cut(s)	761
BsrI	ACTGG	3 cut(s)	466, 598, 763
BssECI	CCNNGG	1 cut(s)	556
BssMI	GATC	6 cut(s)	36, 228, 262, 274, 361, 424
Bst2UI	CCWGG	3 cut(s)	80, 557, 680
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	2 cut(s)	120, 329
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	132, 571
BstDEI	CTNAG	3 cut(s)	418, 565, 773
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstF5I	GGATG	2 cut(s)	250, 780
BstHHI	GCGC	1 cut(s)	780
BstKTI	GATC	6 cut(s)	39, 231, 265, 277, 364, 427
BstMBI	GATC	6 cut(s)	36, 228, 262, 274, 361, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	3 cut(s)	80, 557, 680
BstNSI	RCATGY	2 cut(s)	134, 671
BstSCI	CCNGG	3 cut(s)	78, 555, 678
BstSFI	CTRYAG	1 cut(s)	492
BstV1I	GCAGC	3 cut(s)	110, 506, 693
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
BsuI	GTATCC	1 cut(s)	317
BtsCI	GGATG	2 cut(s)	250, 780
BtsI	GCAGTG	1 cut(s)	323
BtsIMutI	CAGTG	1 cut(s)	323
Cac8I	GCNNGC	2 cut(s)	132, 571
CaiI	CAGNNNCTG	1 cut(s)	500
CciI	TCATGA	1 cut(s)	136
CfoI	GCGC	1 cut(s)	780
Cfr13I	GGNCC	1 cut(s)	560
Csp6I	GTAC	3 cut(s)	143, 665, 762
CviAII	CATG	4 cut(s)	131, 137, 174, 668
CviJI	RGCY	8 cut(s)	101, 339, 422, 437, 497, 540, 683, 772
CviKI_1	RGCY	8 cut(s)	101, 339, 422, 437, 497, 540, 683, 772
CviQI	GTAC	3 cut(s)	143, 665, 762
DdeI	CTNAG	3 cut(s)	418, 565, 773
DpnI	GATC	6 cut(s)	38, 230, 264, 276, 363, 426
DpnII	GATC	6 cut(s)	36, 228, 262, 274, 361, 424
Eam1104I	CTCTTC	2 cut(s)	120, 329
EarI	CTCTTC	2 cut(s)	120, 329
Ecl136II	GAGCTC	1 cut(s)	772
Eco24I	GRGCYC	1 cut(s)	774
Eco47I	GGWCC	1 cut(s)	560
Eco53kI	GAGCTC	1 cut(s)	772
Eco88I	CYCGRG	1 cut(s)	622
EcoICRI	GAGCTC	1 cut(s)	772
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	560
EcoRII	CCWGG	3 cut(s)	78, 555, 678
EcoT38I	GRGCYC	1 cut(s)	774
FaeI	CATG	4 cut(s)	134, 140, 177, 671
FalI	AAGNNNNNCTT	2 cut(s)	323, 355
FaqI	GGGAC	1 cut(s)	546
FatI	CATG	4 cut(s)	130, 136, 173, 667
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	4 cut(s)	99, 171, 495, 707
FokI	GGATG	2 cut(s)	237, 767
FriOI	GRGCYC	1 cut(s)	774
Fsp4HI	GCNGC	4 cut(s)	99, 171, 495, 707
FspBI	CTAG	1 cut(s)	645
GlaI	GCGC	1 cut(s)	779
GluI	GCNGC	4 cut(s)	99, 171, 495, 707
HhaI	GCGC	1 cut(s)	780
Hin1II	CATG	4 cut(s)	134, 140, 177, 671
Hin6I	GCGC	1 cut(s)	778
HinP1I	GCGC	1 cut(s)	778
HinfI	GANTC	4 cut(s)	83, 292, 508, 697
HphI	GGTGA	1 cut(s)	503
Hpy188I	TCNGA	3 cut(s)	88, 396, 702
Hpy188III	TCNNGA	9 cut(s)	105, 137, 153, 254, 278, 359, 530, 645, 784
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	7 cut(s)	98, 442, 486, 494, 503, 595, 739
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	3 cut(s)	418, 565, 773
Hsp92II	CATG	4 cut(s)	134, 140, 177, 671
HspAI	GCGC	1 cut(s)	778
KflI	GGGWCCC	1 cut(s)	560
KpnI	GGTACC	1 cut(s)	765
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	6 cut(s)	36, 228, 262, 274, 361, 424
LguI	GCTCTTC	2 cut(s)	120, 329
LmnI	GCTCC	2 cut(s)	434, 714
Lsp1109I	GCAGC	3 cut(s)	110, 506, 693
LweI	GCATC	3 cut(s)	439, 693, 789
MaeI	CTAG	1 cut(s)	645
MalI	GATC	6 cut(s)	38, 230, 264, 276, 363, 426
MboI	GATC	6 cut(s)	36, 228, 262, 274, 361, 424
MboII	GAAGA	7 cut(s)	16, 134, 137, 346, 383, 811, 814
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	774
MluCI	AATT	3 cut(s)	90, 180, 584
MlyI	GAGTC	1 cut(s)	691
MnlI	CCTC	6 cut(s)	70, 73, 517, 574, 641, 644
MroXI	GAANNNNTTC	2 cut(s)	338, 354
MseI	TTAA	2 cut(s)	183, 579
MslI	CAYNNNNRTG	3 cut(s)	135, 447, 519
MspR9I	CCNGG	3 cut(s)	80, 557, 680
MvaI	CCWGG	3 cut(s)	80, 557, 680
MwoI	GCNNNNNNNGC	1 cut(s)	500
NdeII	GATC	6 cut(s)	36, 228, 262, 274, 361, 424
NlaIII	CATG	4 cut(s)	134, 140, 177, 671
NlaIV	GGNNCC	3 cut(s)	561, 562, 763
NspI	RCATGY	2 cut(s)	134, 671
OliI	CACNNNNGTG	1 cut(s)	519
PaeI	GCATGC	1 cut(s)	134
PagI	TCATGA	1 cut(s)	136
PciI	ACATGT	1 cut(s)	667
PciSI	GCTCTTC	2 cut(s)	120, 329
PdmI	GAANNNNTTC	2 cut(s)	338, 354
PfeI	GAWTC	3 cut(s)	83, 292, 508
PkrI	GCNGC	4 cut(s)	100, 172, 496, 708
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
PpuMI	RGGWCCY	1 cut(s)	560
PscI	ACATGT	1 cut(s)	667
Psp124BI	GAGCTC	1 cut(s)	774
Psp5II	RGGWCCY	1 cut(s)	560
Psp6I	CCWGG	3 cut(s)	78, 555, 678
PspGI	CCWGG	3 cut(s)	78, 555, 678
PspN4I	GGNNCC	3 cut(s)	561, 562, 763
PspPI	GGNCC	1 cut(s)	560
PspPPI	RGGWCCY	1 cut(s)	560
PstI	CTGCAG	1 cut(s)	496
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	3 cut(s)	144, 666, 763
RsaNI	GTAC	3 cut(s)	143, 665, 762
RseI	CAYNNNNRTG	3 cut(s)	135, 447, 519
SacI	GAGCTC	1 cut(s)	774
SapI	GCTCTTC	2 cut(s)	120, 329
SaqAI	TTAA	2 cut(s)	183, 579
SatI	GCNGC	4 cut(s)	99, 171, 495, 707
Sau3AI	GATC	6 cut(s)	36, 228, 262, 274, 361, 424
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	1 cut(s)	691
ScrFI	CCNGG	3 cut(s)	80, 557, 680
SduI	GDGCHC	1 cut(s)	774
SfaNI	GCATC	3 cut(s)	439, 693, 789
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	560
SmiMI	CAYNNNNRTG	3 cut(s)	135, 447, 519
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
SphI	GCATGC	1 cut(s)	134
Sse9I	AATT	3 cut(s)	90, 180, 584
SsiI	CCGC	3 cut(s)	170, 405, 432
SspMI	CTAG	1 cut(s)	645
SstI	GAGCTC	1 cut(s)	774
StyD4I	CCNGG	3 cut(s)	78, 555, 678
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	2 cut(s)	35, 115
TasI	AATT	3 cut(s)	90, 180, 584
TatI	WGTACW	2 cut(s)	142, 664
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	83, 292, 508
Tru1I	TTAA	2 cut(s)	183, 579
Tru9I	TTAA	2 cut(s)	183, 579
TscAI	CASTG	1 cut(s)	323
TseI	GCWGC	3 cut(s)	98, 494, 706
TspDTI	ATGAA	7 cut(s)	17, 153, 239, 284, 324, 473, 597
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	560
XagI	CCTNNNNNAGG	1 cut(s)	521
XapI	RAATTY	1 cut(s)	90
XbaI	TCTAGA	1 cut(s)	644
XceI	RCATGY	2 cut(s)	134, 671
XmnI	GAANNNNTTC	2 cut(s)	338, 354
XspI	CTAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.