Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010751

Physical Location & Seq

Genomic Coordinates Reverse (-)

25784590 .. 25787780

Gene Structure 3191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1163900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGAAGAAAATCAACCTGTTTGTTTCAATCCTTTTCTTGTTATACCTTCAACAAACACTCCAAGTCTCCTCCCTTACGCAGGCAAACCAGGATTTTGAAAAATCTGAATCTTTAAGAACTCTTGAACAAGAGCATGCTCATGAAGTGCATTGTTCCAGAGAAAGAAGTAGGGCAGCATGGCAAATTATCGAGAAGTATTTGATGCCATTTGTGAAACAAGAACACTATGAGATTCCAAGTAACTGTCGACTTCATCCCGACAATGATCTATTTAGAGATCAGGAAGAGCACAAGGTTCAGTTGGATATAAACGAATGGCAGTGCGGATACTGTAAGAACAGCTTCCGTGCTGAAATGTTTCTTGATCAACATTTTGACAATAGACACTACAATCTTCTGAATATAAGTGGAAGCAAGTGCTTAGCTGATTTATGTGGAGCTTTGCATTGTGATGCTGTTTTGAATACCAAGTCAAGCAAAACCAAATGCAATCCTGCTGCTGTTGCAAGGAATCACCACCTATGTGAGGGTCTTGCCAATAGCTGTTTTCCAATCAACCAAAGTCCTTCAGCACGCCGTCTTAATGAGTTTTTCTTGCACCAATTTTGTCATGCTCATACTTGCTTGGGGAAACGGAAACTTTTTCCTAGAGGAGGAAAGAAGCATTCAAGTGTATTCTACATGGCTATCTCCATACTGACTTTGATGCTTCTCCCTATTTTCTATCTGATAGTTTATTTGCACCAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

29.18

Weight (kDa)

8.57

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010751)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63280
fragaria_vesca	FvH4_5g07330 FvH4_5g07330 FvH4_5g07330
malus_domestica	MD06G1153500.v1.1 MD06G1157300.v1.1 MD14G1163900.v1.1
prunus_persica	Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1 Prupe.5G157300_v2.0.a1
pyrus_communis	pycom14g13660
rosa_chinensis	RchiOBHm_Chr7g0191231
rosa_laevigata	RLG00000004467
rosa_multiflora	Rmu_sc0004860.1_g000012
rosa_roxburghii	Rroxscaffold_3G00263960
rosa_rugosa	Rorug06G0509700
rosa_samantha	Rh7AG116900 Rh7CG121800 Rh7DG120300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	247
AciI	CCGC	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	552
AfiI	CCNNNNNNNGG	3 cut(s)	79, 526, 653
AgsI	TTSAA	6 cut(s)	27, 50, 98, 125, 463, 669
AjnI	CCWGG	1 cut(s)	87
AleI	CACNNNNGTG	1 cut(s)	522
AluBI	AGCT	4 cut(s)	342, 425, 440, 543
AluI	AGCT	4 cut(s)	342, 425, 440, 543
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	70
ApeKI	GCWGC	2 cut(s)	173, 497
Asp700I	GAANNNNTTC	2 cut(s)	341, 357
AsuHPI	GGTGA	1 cut(s)	506
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	185, 484
BceAI	ACGGC	1 cut(s)	561
BciT130I	CCWGG	1 cut(s)	89
BciVI	GTATCC	1 cut(s)	320
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	648
BfuI	GTATCC	1 cut(s)	320
BisI	GCNGC	2 cut(s)	174, 498
BlpI	GCTNAGC	1 cut(s)	421
BlsI	GCNGC	2 cut(s)	175, 499
Bme1390I	CCNGG	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	89
BmsI	GCATC	3 cut(s)	192, 442, 696
Bpu1102I	GCTNAGC	1 cut(s)	421
BsaXI	ACNNNNNCTCC	2 cut(s)	42, 72
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 526, 653
BseBI	CCWGG	1 cut(s)	89
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	3 cut(s)	79, 526, 653
BseRI	GAGGAG	2 cut(s)	58, 666
BseXI	GCAGC	2 cut(s)	185, 484
BsiHKAI	GWGCWC	1 cut(s)	291
BslI	CCNNNNNNNGG	3 cut(s)	79, 526, 653
BsmAI	GTCTC	1 cut(s)	70
BsmI	GAATGC	1 cut(s)	664
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	265, 277, 364
Bsp1720I	GCTNAGC	1 cut(s)	421
BspACI	CCGC	1 cut(s)	324
BspHI	TCATGA	1 cut(s)	139
BspQI	GCTCTTC	1 cut(s)	279
BssMI	GATC	3 cut(s)	265, 277, 364
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	2 cut(s)	245, 332
Bst6I	CTCTTC	1 cut(s)	279
BstC8I	GCNNGC	3 cut(s)	81, 135, 574
BstDEI	CTNAG	1 cut(s)	421
BstENI	CCTNNNNNAGG	3 cut(s)	77, 524, 651
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	3 cut(s)	268, 280, 367
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	3 cut(s)	265, 277, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	185, 484
BsuI	GTATCC	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	3 cut(s)	81, 135, 574
CciI	TCATGA	1 cut(s)	139
CviAII	CATG	5 cut(s)	134, 140, 177, 611, 682
CviJI	RGCY	5 cut(s)	342, 425, 440, 543, 686
CviKI_1	RGCY	5 cut(s)	342, 425, 440, 543, 686
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	3 cut(s)	267, 279, 366
DpnII	GATC	3 cut(s)	265, 277, 364
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	552
EcoNI	CCTNNNNNAGG	3 cut(s)	77, 524, 651
EcoRII	CCWGG	1 cut(s)	87
FaeI	CATG	5 cut(s)	137, 143, 180, 614, 685
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FatI	CATG	5 cut(s)	133, 139, 176, 610, 681
FbaI	TGATCA	1 cut(s)	364
FblI	GTMKAC	1 cut(s)	247
Fnu4HI	GCNGC	2 cut(s)	174, 498
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	2 cut(s)	174, 498
FspBI	CTAG	1 cut(s)	648
GluI	GCNGC	2 cut(s)	174, 498
Hin1II	CATG	5 cut(s)	137, 143, 180, 614, 685
HincII	GTYRAC	1 cut(s)	248
HindII	GTYRAC	1 cut(s)	248
HinfI	GANTC	3 cut(s)	107, 232, 511
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	3 cut(s)	106, 399, 729
Hpy188III	TCNNGA	7 cut(s)	122, 140, 156, 190, 257, 281, 362
Hpy8I	GTNNAC	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	56, 576
HpyCH4III	ACNGT	2 cut(s)	245, 332
HpyCH4V	TGCA	6 cut(s)	148, 445, 489, 506, 598, 742
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	1 cut(s)	421
Hsp92II	CATG	5 cut(s)	137, 143, 180, 614, 685
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	3 cut(s)	265, 277, 364
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	1 cut(s)	437
LpnPI	CCDG	7 cut(s)	29, 65, 74, 101, 169, 266, 507
Lsp1109I	GCAGC	2 cut(s)	185, 484
LweI	GCATC	3 cut(s)	192, 442, 696
MaeI	CTAG	1 cut(s)	648
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	3 cut(s)	267, 279, 366
MboI	GATC	3 cut(s)	265, 277, 364
MboII	GAAGA	3 cut(s)	16, 296, 386
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	2 cut(s)	183, 602
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	4 cut(s)	79, 520, 644, 647
MroXI	GAANNNNTTC	2 cut(s)	341, 357
MseI	TTAA	2 cut(s)	113, 582
MslI	CAYNNNNRTG	4 cut(s)	138, 450, 522, 669
MspR9I	CCNGG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	664
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	503
NdeII	GATC	3 cut(s)	265, 277, 364
NlaIII	CATG	5 cut(s)	137, 143, 180, 614, 685
NspI	RCATGY	1 cut(s)	137
OliI	CACNNNNGTG	1 cut(s)	522
PaeI	GCATGC	1 cut(s)	137
PagI	TCATGA	1 cut(s)	139
PciSI	GCTCTTC	1 cut(s)	279
PctI	GAATGC	1 cut(s)	664
PdmI	GAANNNNTTC	2 cut(s)	341, 357
PfeI	GAWTC	3 cut(s)	107, 232, 511
PkrI	GCNGC	2 cut(s)	175, 499
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
RseI	CAYNNNNRTG	4 cut(s)	138, 450, 522, 669
SalI	GTCGAC	1 cut(s)	246
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	113, 582
SatI	GCNGC	2 cut(s)	174, 498
Sau3AI	GATC	3 cut(s)	265, 277, 364
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	8 cut(s)	18, 48, 297, 344, 427, 442, 522, 545
SfaNI	GCATC	3 cut(s)	192, 442, 696
SmiMI	CAYNNNNRTG	4 cut(s)	138, 450, 522, 669
SphI	GCATGC	1 cut(s)	137
Sse9I	AATT	2 cut(s)	183, 602
SsiI	CCGC	1 cut(s)	324
SspMI	CTAG	1 cut(s)	648
StyD4I	CCNGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	245, 332
TaqI	TCGA	2 cut(s)	189, 247
TasI	AATT	2 cut(s)	183, 602
TfiI	GAWTC	3 cut(s)	107, 232, 511
Tru1I	TTAA	2 cut(s)	113, 582
Tru9I	TTAA	2 cut(s)	113, 582
TscAI	CASTG	1 cut(s)	326
TseI	GCWGC	2 cut(s)	173, 497
TspDTI	ATGAA	3 cut(s)	17, 156, 242
TspGWI	ACGGA	2 cut(s)	335, 649
TspRI	CASTG	1 cut(s)	326
XagI	CCTNNNNNAGG	3 cut(s)	77, 524, 651
XceI	RCATGY	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	247
XmnI	GAANNNNTTC	2 cut(s)	341, 357
XspI	CTAG	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.