MD06G1153500.v1.1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0010751
Physical Location & Seq
Reverse (-)
29664205 .. 29664970
766 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1153500.v1.1.491

Sequence Viewer

Length: 573 bp
ATGCAGAGTAGCAGCAAGTGCTTAGCTGATTTATGCGGAGCTTTGCATTGCGATGCTGTGATGAATACCAAGTCGAGCAAAACCAAATGCAATCCTGCATCTGTTGCATGGAATCACCACCTATGTGAGGGTCTTGCCAATAGATGTTTCCCGATTAATCAAAGTCCTTCAGCACGCCGTCTTAATGGTATTTTTTTTGTTGTCAACCGAAGCTCTACCACTACTGCTTTTATTGTACTTGTGCTTATACTTGGGTTTATTATAGAGTTTTTCTTGCACCAATTTTGTCACGCTCATACTTGCTCGGGGAAACGGAAACTTTTTCCCAGAGGAGGAGAGGTAAGGTCTCAGTCTGTTACTGCAGTTGGTTTCGCTATAAAGAATGAATTGTGCCGCAGTTTCAATCCTGGCTTATGTTCCATTGCAAAACATATAAGTGTATTCTACCTGGCTATCTCCATACTGACTTTGATGCTGCTCCCTATTTTCTATCTGATGGTGTATTTGCACCAAAGGTATCACTTTTTCGGACACTTAGATTTCACATTTGGATTTGTTGCAAGATTTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.3

Weight (kDa)

9.45

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 36, 394
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 1 cut(s) 237
AfiI CCNNNNNNNGG 2 cut(s) 127, 332
AgsI TTSAA 1 cut(s) 403
AjnI CCWGG 2 cut(s) 406, 447
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AleI CACNNNNGTG 1 cut(s) 123
AluBI AGCT 3 cut(s) 26, 41, 213
AluI AGCT 3 cut(s) 26, 41, 213
Alw26I GTCTC 1 cut(s) 351
Ama87I CYCGRG 1 cut(s) 304
ApeKI GCWGC 2 cut(s) 12, 475
AseI ATTAAT 1 cut(s) 156
AsuHPI GGTGA 1 cut(s) 107
AvaI CYCGRG 1 cut(s) 304
BbvI GCAGC 2 cut(s) 24, 462
BccI CCATC 1 cut(s) 490
BceAI ACGGC 1 cut(s) 162
BciT130I CCWGG 2 cut(s) 408, 449
BcoDI GTCTC 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 360
BisI GCNGC 3 cut(s) 13, 394, 476
BlpI GCTNAGC 1 cut(s) 22
BlsI GCNGC 3 cut(s) 14, 395, 477
Bme1390I CCNGG 2 cut(s) 408, 449
BmeT110I CYCGRG 1 cut(s) 304
BmrFI CCNGG 2 cut(s) 408, 449
BmsI GCATC 3 cut(s) 43, 107, 462
Bpu1102I GCTNAGC 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 324, 354
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 332
Bse3DI GCAATG 2 cut(s) 46, 420
BseBI CCWGG 2 cut(s) 408, 449
BseLI CCNNNNNNNGG 2 cut(s) 127, 332
BseMI GCAATG 2 cut(s) 46, 420
BseMII CTCAG 1 cut(s) 362
BseRI GAGGAG 2 cut(s) 345, 348
BseXI GCAGC 2 cut(s) 24, 462
BsiHKCI CYCGRG 1 cut(s) 304
BslI CCNNNNNNNGG 2 cut(s) 127, 332
BsmAI GTCTC 1 cut(s) 351
Bso31I GGTCTC 1 cut(s) 351
BsoBI CYCGRG 1 cut(s) 304
Bsp1720I GCTNAGC 1 cut(s) 22
BspACI CCGC 2 cut(s) 36, 394
BspCNI CTCAG 1 cut(s) 361
BspMAI CTGCAG 1 cut(s) 364
BspTNI GGTCTC 1 cut(s) 351
BsrDI GCAATG 2 cut(s) 46, 420
Bst2UI CCWGG 2 cut(s) 408, 449
BstAPI GCANNNNNTGC 2 cut(s) 18, 104
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 3 cut(s) 22, 348, 535
BstENI CCTNNNNNAGG 1 cut(s) 125
BstMAI GTCTC 1 cut(s) 351
BstMWI GCNNNNNNNGC 2 cut(s) 18, 104
BstNI CCWGG 2 cut(s) 408, 449
BstSCI CCNGG 2 cut(s) 406, 447
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 2 cut(s) 24, 462
BtgZI GCGATG 1 cut(s) 66
Cac8I GCNNGC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 236
CviAII CATG 1 cut(s) 108
CviJI RGCY 5 cut(s) 26, 41, 213, 411, 452
CviKI_1 RGCY 5 cut(s) 26, 41, 213, 411, 452
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 3 cut(s) 22, 348, 535
Eco31I GGTCTC 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 304
EcoNI CCTNNNNNAGG 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 406, 447
FaeI CATG 1 cut(s) 111
FatI CATG 1 cut(s) 107
Fnu4HI GCNGC 3 cut(s) 13, 394, 476
Fsp4HI GCNGC 3 cut(s) 13, 394, 476
GluI GCNGC 3 cut(s) 13, 394, 476
Hin1II CATG 1 cut(s) 111
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 1 cut(s) 112
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 495, 530
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 177
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 104
HpyF3I CTNAG 3 cut(s) 22, 348, 535
Hsp92II CATG 1 cut(s) 111
LmnI GCTCC 2 cut(s) 38, 483
LpnPI CCDG 6 cut(s) 108, 340, 393, 420, 434, 461
Lsp1109I GCAGC 2 cut(s) 24, 462
LweI GCATC 3 cut(s) 43, 107, 462
MaeIII GTNAC 2 cut(s) 287, 355
MluCI AATT 2 cut(s) 281, 386
MnlI CCTC 4 cut(s) 121, 323, 326, 331
MseI TTAA 2 cut(s) 156, 183
MslI CAYNNNNRTG 3 cut(s) 51, 123, 435
MspR9I CCNGG 2 cut(s) 408, 449
MvaI CCWGG 2 cut(s) 408, 449
MwoI GCNNNNNNNGC 2 cut(s) 18, 104
NlaIII CATG 1 cut(s) 111
NmuCI GTSAC 1 cut(s) 287
OliI CACNNNNGTG 1 cut(s) 123
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 3 cut(s) 14, 395, 477
PshBI ATTAAT 1 cut(s) 156
Psp6I CCWGG 2 cut(s) 406, 447
PspGI CCWGG 2 cut(s) 406, 447
PstI CTGCAG 1 cut(s) 364
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
RseI CAYNNNNRTG 3 cut(s) 51, 123, 435
SaqAI TTAA 2 cut(s) 156, 183
SatI GCNGC 3 cut(s) 13, 394, 476
ScrFI CCNGG 2 cut(s) 408, 449
SetI ASST 8 cut(s) 28, 43, 123, 215, 342, 347, 450, 518
SfaNI GCATC 3 cut(s) 43, 107, 462
SfcI CTRYAG 1 cut(s) 360
SmiMI CAYNNNNRTG 3 cut(s) 51, 123, 435
Sse9I AATT 2 cut(s) 281, 386
SsiI CCGC 2 cut(s) 36, 394
StyD4I CCNGG 2 cut(s) 406, 447
TaqI TCGA 1 cut(s) 74
TasI AATT 2 cut(s) 281, 386
TatI WGTACW 1 cut(s) 235
TauI GCSGC 1 cut(s) 396
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 2 cut(s) 156, 183
Tru9I TTAA 2 cut(s) 156, 183
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 2 cut(s) 12, 475
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 77, 399
TspGWI ACGGA 1 cut(s) 328
VspI ATTAAT 1 cut(s) 156
XagI CCTNNNNNAGG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.