Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008756

Physical Location & Seq

Genomic Coordinates Reverse (-)

25425950 .. 25429255

Gene Structure 3306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G63520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1590 bp

ATGGCGGAAGTGTCTCTGACAAAGAAGGAGATGACGACAAAGGGAAAGAGCGAGAACTCAAAGAAGATGAAGACAGATATGGCTGATATGGTTCCAATCGCCGCCATGAACGAAGACCTTCTCCACAACATTCTCTTGAGATTGCCGGCAAAATCGTTTGCTTTCGCTTCATGTGTTAACCGATTCTGGAGCAGCGTCTGCAATCGAATTCTCTCTCGCCCCAAAATGATATCTGCTTTCTCTCGTAATCCTGATCAACTTAGAGCTGGAGAAGAAGTACTTGATAAGGTTTTGTCTGAGCCAATTCGACCACAGTTTGTGATCGCAAACATTACATGTGGGAACATGGAAGAAACTTTGACACTGATAACAGAAAGAGTGGGATCAAGGGTTCCTATCATTGTATCTGTTGTTACTGGAATCTTAGGAAAGGAAGCATGCAATGACAAGGCTGGAGAGGTCAGACTGCATTCCACAAGTGATGATGAATTGTTCGATGTTGCAAATTTTGCTATACTGTTGACGATTGGCTACTTACCAGGAATGAAAGTCGACATTATTCCTGTAATTCAGGCTAAAGGGGAATCTGGAGCAGAAATGGAAGACAAATTTGTGATGGATATTAGAAATTATATGTCCATGGTTTCAGGTCATGCTGCTGCACCAGCATGTCTTATACTCTTTGCGGAGGATACTCATGCCACAGAACCTGTTCTTCACAAACTGGATTATGCCATGCCTGCTGAGACTGTTATTGTGGGTGGTCAAATTGGCGAGTTTTTACATAAACGTGGTAATGAACCAAGAAATGTTCAGTTGCAGAAAGATGATATCAGAGTTCTCGCTGGCTTAATATTTGCAAGAGATAGACACAGACCTGCTCAGGCTGAAAGAATTCAGTTTGACACTGCAATATCAAATGGAATGTCATCGGTTGATCTGAGGTACAAGGCGGCTAATGTCAATGTTAGCCTCGGCCCTAGTTGTCCTTCGACGCTTCTGACTGCCAAAAGAAGAGGAGAAGCAGAGGTTCTTGATGGCGATCAAATTCTAGATGACATAGATAATATTCTAGAAAACTATATCTGGGAGAATGATTCATACCTCGGAGTAATAAAACGTAGAAAATACTCAATTGGTTTGGAGGAGAAGCCAAAAATCATGTCCTCCCTTGTATTTCATCAAGTGAATGGATCTGACGATCAGGATCTTTTAGTTGATGGTGCCGGAATCAAAACCGGCGACCAATTCCAAGTATACCTCCCTGATCTCAAAGTGGCTGAAGCAGCACTAAATGATGTTTCTGCTCAACTTAGAAATCTCAAGTCTAAGCCGAATAAACCGGAAGTCGTTGGAGGTTTTGCTTTCGTCGGTAGCTGTCGCGGTGATTCCTTCTTTGGTTGTCCAAACGCAGACAGCTCACCGTTTTTAGAGAACTTCCCGGAGTTACCGTTTGGCGGTATATTCTGCGATGGTGAAATCGGACGCAGCTTAATCTTGGAGGAGGGAGAGGAAAAGAAAGAAGTGAGCATCCAAAGATTTCTTCACGTTTATAGTTCGGTATATCTTATTGTCTCGTATACATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FIST FIST_C

Protein Analysis

529

Amino Acids

58.3

Weight (kDa)

5.24

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63520
fragaria_vesca	FvH4_5g08560
malus_domestica	MD06G1139200.v1.1 MD06G1139600.v1.1 MD06G1139800.v1.1 MD14G1155200.v1.1
prunus_persica	Prupe.5G149200_v2.0.a1 Prupe.5G149200_v2.0.a1
pyrus_communis	pycom06g13010 pycom06g13020 pycom14g12900
rosa_chinensis	RchiOBHm_Chr7g0189831
rosa_laevigata	RLG00000004583
rosa_multiflora	Rmu_sc0000512.1_g000017 Rmu_sc0003419.1_g000040
rosa_roxburghii	Rroxscaffold_3G00265100
rosa_rugosa	Rorug06G0500300 Rorug06G0500300
rosa_samantha	Rh7AG105500 Rh7BG108300 Rh7CG110300 Rh7DG108600
rosa_wichuraiana	Rw7G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	886
AccB1I	GGYRCC	1 cut(s)	1223
AccI	GTMKAC	3 cut(s)	552, 1257, 1580
AccII	CGCG	1 cut(s)	1383
AciI	CCGC	6 cut(s)	5, 102, 686, 953, 1383, 1458
AclWI	GGATC	3 cut(s)	391, 1201, 1215
AcsI	RAATTY	5 cut(s)	207, 505, 608, 894, 1047
AcuI	CTGAAG	1 cut(s)	1302
AfaI	GTAC	2 cut(s)	279, 947
AfiI	CCNNNNNNNGG	1 cut(s)	1457
AflIII	ACRYGT	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	538
AjuI	GAANNNNNNNTTGG	2 cut(s)	1527, 1559
AloI	GAACNNNNNNTCC	2 cut(s)	375, 407
AluBI	AGCT	4 cut(s)	266, 1377, 1419, 1491
AluI	AGCT	4 cut(s)	266, 1377, 1419, 1491
Alw26I	GTCTC	3 cut(s)	18, 740, 1579
AlwI	GGATC	3 cut(s)	391, 1201, 1215
AlwNI	CAGNNNCTG	2 cut(s)	198, 710
AoxI	GGCC	1 cut(s)	976
ApeKI	GCWGC	5 cut(s)	192, 656, 659, 1286, 1488
ApoI	RAATTY	5 cut(s)	207, 505, 608, 894, 1047
ArsI	GACNNNNNNTTYG	4 cut(s)	911, 943, 1148, 1180
Asp700I	GAANNNNTTC	3 cut(s)	117, 711, 894
AspS9I	GGNCC	1 cut(s)	977
AsuC2I	CCSGG	1 cut(s)	1442
AsuHPI	GGTGA	3 cut(s)	1397, 1413, 1487
BanI	GGYRCC	1 cut(s)	1223
BbsI	GAAGAC	3 cut(s)	77, 120, 609
BbvI	GCAGC	5 cut(s)	204, 643, 646, 1298, 1500
BccI	CCATC	4 cut(s)	610, 1031, 1214, 1466
BciT130I	CCWGG	1 cut(s)	540
BciVI	GTATCC	1 cut(s)	685
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	1442
BcoDI	GTCTC	3 cut(s)	18, 740, 1579
BfaI	CTAG	3 cut(s)	981, 1052, 1073
BfuAI	ACCTGC	1 cut(s)	886
BfuI	GTATCC	1 cut(s)	685
BisI	GCNGC	7 cut(s)	102, 193, 657, 660, 954, 1287, 1489
BlsI	GCNGC	7 cut(s)	103, 194, 658, 661, 955, 1288, 1490
BmcAI	AGTACT	1 cut(s)	279
Bme1390I	CCNGG	2 cut(s)	540, 1442
BmgT120I	GGNCC	1 cut(s)	977
BmiI	GGNNCC	3 cut(s)	93, 393, 1225
BmrFI	CCNGG	2 cut(s)	540, 1442
BmsI	GCATC	1 cut(s)	1539
BpiI	GAAGAC	3 cut(s)	77, 120, 609
BpmI	CTGGAG	4 cut(s)	208, 288, 474, 609
Bpu10I	CCTNAGC	1 cut(s)	882
BpuEI	CTTGAG	2 cut(s)	157, 1307
BpuMI	CCSGG	1 cut(s)	1442
BsaBI	GATNNNNATC	2 cut(s)	1041, 1206
BsaJI	CCNNGG	3 cut(s)	639, 973, 1105
BsaWI	WCCGGW	1 cut(s)	1342
BsaXI	ACNNNNNCTCC	4 cut(s)	261, 291, 1436, 1466
Bsc4I	CCNNNNNNNGG	1 cut(s)	1457
Bse118I	RCCGGY	2 cut(s)	145, 1238
Bse1I	ACTGG	2 cut(s)	421, 729
Bse3DI	GCAATG	1 cut(s)	448
Bse8I	GATNNNNATC	2 cut(s)	1041, 1206
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	3 cut(s)	639, 973, 1105
BseGI	GGATG	1 cut(s)	1530
BseJI	GATNNNNATC	2 cut(s)	1041, 1206
BseLI	CCNNNNNNNGG	1 cut(s)	1457
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	4 cut(s)	288, 735, 896, 932
BseNI	ACTGG	2 cut(s)	421, 729
BseRI	GAGGAG	3 cut(s)	1032, 1160, 1517
BseXI	GCAGC	5 cut(s)	204, 643, 646, 1298, 1500
BsgI	GTGCAG	1 cut(s)	645
Bsh1236I	CGCG	1 cut(s)	1383
BshFI	GGCC	1 cut(s)	978
BshNI	GGYRCC	1 cut(s)	1223
BsiSI	CCGG	5 cut(s)	146, 1227, 1239, 1343, 1442
BslI	CCNNNNNNNGG	1 cut(s)	1457
BsmAI	GTCTC	3 cut(s)	18, 740, 1579
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	978
Bsp143I	GATC	9 cut(s)	253, 321, 383, 937, 1042, 1193, 1201, 1207, 1267
Bsp19I	CCATGG	1 cut(s)	639
BspACI	CCGC	6 cut(s)	5, 102, 686, 953, 1383, 1458
BspANI	GGCC	1 cut(s)	978
BspCNI	CTCAG	4 cut(s)	289, 736, 895, 933
BspFNI	CGCG	1 cut(s)	1383
BspLI	GGNNCC	3 cut(s)	93, 393, 1225
BspMI	ACCTGC	1 cut(s)	886
BspPI	GGATC	3 cut(s)	391, 1201, 1215
BspT107I	GGYRCC	1 cut(s)	1223
BsrDI	GCAATG	1 cut(s)	448
BsrFI	RCCGGY	2 cut(s)	145, 1238
BsrI	ACTGG	2 cut(s)	421, 729
BssAI	RCCGGY	2 cut(s)	145, 1238
BssECI	CCNNGG	3 cut(s)	639, 973, 1105
BssMI	GATC	9 cut(s)	253, 321, 383, 937, 1042, 1193, 1201, 1207, 1267
BssNAI	GTATAC	2 cut(s)	1258, 1581
BssT1I	CCWWGG	1 cut(s)	639
Bst1107I	GTATAC	2 cut(s)	1258, 1581
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	5 cut(s)	315, 519, 751, 1425, 1452
Bst6I	CTCTTC	1 cut(s)	1009
BstAPI	GCANNNNNTGC	2 cut(s)	198, 509
BstC8I	GCNNGC	4 cut(s)	147, 439, 741, 847
BstDEI	CTNAG	8 cut(s)	260, 297, 424, 744, 882, 941, 1313, 1329
BstDSI	CCRYGG	1 cut(s)	639
BstF5I	GGATG	1 cut(s)	1530
BstFNI	CGCG	1 cut(s)	1383
BstKTI	GATC	9 cut(s)	256, 324, 386, 940, 1045, 1196, 1204, 1210, 1270
BstMAI	GTCTC	3 cut(s)	18, 740, 1579
BstMBI	GATC	9 cut(s)	253, 321, 383, 937, 1042, 1193, 1201, 1207, 1267
BstMWI	GCNNNNNNNGC	5 cut(s)	198, 509, 665, 740, 1286
BstNI	CCWGG	1 cut(s)	540
BstNSI	RCATGY	3 cut(s)	339, 441, 672
BstSCI	CCNGG	2 cut(s)	538, 1440
BstUI	CGCG	1 cut(s)	1383
BstV1I	GCAGC	5 cut(s)	204, 643, 646, 1298, 1500
BstV2I	GAAGAC	3 cut(s)	77, 120, 609
BstX2I	RGATCY	2 cut(s)	1193, 1207
BstYI	RGATCY	2 cut(s)	1193, 1207
BstZ17I	GTATAC	2 cut(s)	1258, 1581
BsuI	GTATCC	1 cut(s)	685
BsuRI	GGCC	1 cut(s)	978
BtgI	CCRYGG	1 cut(s)	639
BtgZI	GCGATG	1 cut(s)	1485
BtsCI	GGATG	1 cut(s)	1530
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	2 cut(s)	362, 906
BveI	ACCTGC	1 cut(s)	886
Cac8I	GCNNGC	4 cut(s)	147, 439, 741, 847
CaiI	CAGNNNCTG	2 cut(s)	198, 710
Cfr10I	RCCGGY	2 cut(s)	145, 1238
Cfr13I	GGNCC	1 cut(s)	977
CseI	GACGC	3 cut(s)	184, 1003, 1494
Csp6I	GTAC	2 cut(s)	278, 946
CviQI	GTAC	2 cut(s)	278, 946
DdeI	CTNAG	8 cut(s)	260, 297, 424, 744, 882, 941, 1313, 1329
DpnI	GATC	9 cut(s)	255, 323, 385, 939, 1044, 1195, 1203, 1209, 1269
DpnII	GATC	9 cut(s)	253, 321, 383, 937, 1042, 1193, 1201, 1207, 1267
Eam1104I	CTCTTC	1 cut(s)	1009
EarI	CTCTTC	1 cut(s)	1009
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	639
Eco32I	GATATC	2 cut(s)	231, 832
Eco57I	CTGAAG	1 cut(s)	1302
EcoRI	GAATTC	2 cut(s)	207, 894
EcoRII	CCWGG	1 cut(s)	538
EcoRV	GATATC	2 cut(s)	231, 832
EcoT14I	CCWWGG	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	639
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FbaI	TGATCA	1 cut(s)	253
FblI	GTMKAC	3 cut(s)	552, 1257, 1580
Fnu4HI	GCNGC	7 cut(s)	102, 193, 657, 660, 954, 1287, 1489
FokI	GGATG	1 cut(s)	1517
Fsp4HI	GCNGC	7 cut(s)	102, 193, 657, 660, 954, 1287, 1489
FspBI	CTAG	3 cut(s)	981, 1052, 1073
GluI	GCNGC	7 cut(s)	102, 193, 657, 660, 954, 1287, 1489
GsuI	CTGGAG	4 cut(s)	208, 288, 474, 609
HaeIII	GGCC	1 cut(s)	978
HapII	CCGG	5 cut(s)	146, 1227, 1239, 1343, 1442
HgaI	GACGC	3 cut(s)	184, 1003, 1494
HincII	GTYRAC	3 cut(s)	178, 522, 553
HindII	GTYRAC	3 cut(s)	178, 522, 553
HinfI	GANTC	6 cut(s)	183, 420, 584, 1097, 1230, 1388
HpaI	GTTAAC	1 cut(s)	178
HpaII	CCGG	5 cut(s)	146, 1227, 1239, 1343, 1442
HphI	GGTGA	3 cut(s)	1397, 1413, 1487
Hpy166II	GTNNAC	5 cut(s)	178, 522, 553, 1258, 1581
Hpy188I	TCNGA	9 cut(s)	18, 298, 464, 836, 942, 1002, 1109, 1198, 1484
Hpy188III	TCNNGA	8 cut(s)	136, 187, 251, 588, 1034, 1052, 1073, 1205
Hpy8I	GTNNAC	5 cut(s)	178, 522, 553, 1258, 1581
Hpy99I	CGWCG	2 cut(s)	997, 1373
HpyAV	CCTTC	4 cut(s)	19, 128, 999, 1402
HpyCH4III	ACNGT	5 cut(s)	315, 519, 751, 1425, 1452
HpyCH4IV	ACGT	3 cut(s)	790, 1120, 1548
HpyCH4V	TGCA	8 cut(s)	201, 441, 469, 503, 662, 820, 860, 911
HpyF10VI	GCNNNNNNNGC	5 cut(s)	198, 509, 665, 740, 1286
HpyF3I	CTNAG	8 cut(s)	260, 297, 424, 744, 882, 941, 1313, 1329
HpySE526I	ACGT	3 cut(s)	790, 1120, 1548
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	253
KspAI	GTTAAC	1 cut(s)	178
Kzo9I	GATC	9 cut(s)	253, 321, 383, 937, 1042, 1193, 1201, 1207, 1267
LmnI	GCTCC	2 cut(s)	189, 590
Lsp1109I	GCAGC	5 cut(s)	204, 643, 646, 1298, 1500
LweI	GCATC	1 cut(s)	1539
MaeI	CTAG	3 cut(s)	981, 1052, 1073
MaeII	ACGT	3 cut(s)	790, 1120, 1548
MaeIII	GTNAC	2 cut(s)	412, 1446
MalI	GATC	9 cut(s)	255, 323, 385, 939, 1044, 1195, 1203, 1209, 1269
MboI	GATC	9 cut(s)	253, 321, 383, 937, 1042, 1193, 1201, 1207, 1267
MboII	GAAGA	9 cut(s)	76, 82, 125, 284, 362, 614, 707, 1026, 1535
MfeI	CAATTG	1 cut(s)	1134
MflI	RGATCY	2 cut(s)	1193, 1207
MmeI	TCCRAC	1 cut(s)	1333
MroNI	GCCGGC	1 cut(s)	145
MroXI	GAANNNNTTC	3 cut(s)	117, 711, 894
MseI	TTAA	4 cut(s)	177, 851, 1493, 1588
MslI	CAYNNNNRTG	2 cut(s)	667, 789
MspI	CCGG	5 cut(s)	146, 1227, 1239, 1343, 1442
MspR9I	CCNGG	2 cut(s)	540, 1442
MunI	CAATTG	1 cut(s)	1134
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	1 cut(s)	540
MvnI	CGCG	1 cut(s)	1383
MwoI	GCNNNNNNNGC	5 cut(s)	198, 509, 665, 740, 1286
NaeI	GCCGGC	1 cut(s)	147
NciI	CCSGG	1 cut(s)	1442
NcoI	CCATGG	1 cut(s)	639
NdeII	GATC	9 cut(s)	253, 321, 383, 937, 1042, 1193, 1201, 1207, 1267
NgoMIV	GCCGGC	1 cut(s)	145
NlaIV	GGNNCC	3 cut(s)	93, 393, 1225
NmeAIII	GCCGAG	1 cut(s)	954
NspI	RCATGY	3 cut(s)	339, 441, 672
PaeI	GCATGC	1 cut(s)	441
PciI	ACATGT	1 cut(s)	335
PctI	GAATGC	1 cut(s)	469
PdiI	GCCGGC	1 cut(s)	147
PdmI	GAANNNNTTC	3 cut(s)	117, 711, 894
PfeI	GAWTC	6 cut(s)	183, 420, 584, 1097, 1230, 1388
PfoI	TCCNGGA	1 cut(s)	1440
PkrI	GCNGC	7 cut(s)	103, 194, 658, 661, 955, 1288, 1490
PscI	ACATGT	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	3 cut(s)	93, 393, 1225
PspPI	GGNCC	1 cut(s)	977
PstNI	CAGNNNCTG	2 cut(s)	198, 710
PsuI	RGATCY	2 cut(s)	1193, 1207
RsaI	GTAC	2 cut(s)	279, 947
RsaNI	GTAC	2 cut(s)	278, 946
RseI	CAYNNNNRTG	2 cut(s)	667, 789
SalI	GTCGAC	1 cut(s)	551
SaqAI	TTAA	4 cut(s)	177, 851, 1493, 1588
SatI	GCNGC	7 cut(s)	102, 193, 657, 660, 954, 1287, 1489
Sau3AI	GATC	9 cut(s)	253, 321, 383, 937, 1042, 1193, 1201, 1207, 1267
Sau96I	GGNCC	1 cut(s)	977
ScaI	AGTACT	1 cut(s)	279
ScrFI	CCNGG	2 cut(s)	540, 1442
SfaNI	GCATC	1 cut(s)	1539
SmiMI	CAYNNNNRTG	2 cut(s)	667, 789
SmlI	CTYRAG	2 cut(s)	136, 1322
SmoI	CTYRAG	2 cut(s)	136, 1322
SphI	GCATGC	1 cut(s)	441
SsiI	CCGC	6 cut(s)	5, 102, 686, 953, 1383, 1458
SspI	AATATT	2 cut(s)	855, 1069
SspMI	CTAG	3 cut(s)	981, 1052, 1073
StyD4I	CCNGG	2 cut(s)	538, 1440
StyI	CCWWGG	1 cut(s)	639
TaaI	ACNGT	5 cut(s)	315, 519, 751, 1425, 1452
TaiI	ACGT	3 cut(s)	793, 1123, 1551
TaqI	TCGA	5 cut(s)	205, 307, 495, 552, 992
TatI	WGTACW	1 cut(s)	277
TauI	GCSGC	2 cut(s)	104, 956
TfiI	GAWTC	6 cut(s)	183, 420, 584, 1097, 1230, 1388
Tru1I	TTAA	4 cut(s)	177, 851, 1493, 1588
Tru9I	TTAA	4 cut(s)	177, 851, 1493, 1588
TscAI	CASTG	2 cut(s)	369, 913
TseI	GCWGC	5 cut(s)	192, 656, 659, 1286, 1488
TspDTI	ATGAA	8 cut(s)	83, 122, 159, 501, 560, 813, 1089, 1169
TspRI	CASTG	2 cut(s)	369, 913
XapI	RAATTY	5 cut(s)	207, 505, 608, 894, 1047
XbaI	TCTAGA	2 cut(s)	1051, 1072
XceI	RCATGY	3 cut(s)	339, 441, 672
XmiI	GTMKAC	3 cut(s)	552, 1257, 1580
XmnI	GAANNNNTTC	3 cut(s)	117, 711, 894
XspI	CTAG	3 cut(s)	981, 1052, 1073
ZrmI	AGTACT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.