Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008756

Physical Location & Seq

Genomic Coordinates Forward (+)

28407528 .. 28410344

Gene Structure 2817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1139600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGATTTTTATTTTGTTCTATGTTTGAAATTGCAGATATCGAAAAAATTGGGGTCCAGTATTCCATTCATCATTTCTACTTCAAGTGGAATATTTGGAAGAGATGCTCTTACCCATGAATTCAAAGAGGTTAAGTGGGGAGAGGTTTGTGGTGATGGACGTGATGAAGATTGCTCTATACCAACAAAGGATGCGAACTACGGCATCCTTTTGACTGTTGGCTTTGTGCCAGGATTGAAAGTTGATGCCATCCCGCTGTTACGAACAATAAAGGATCCTCGAGAAGTCTTGCTTGATAAATTCATCATGGATATTAAGGATTACACAGCCTCTGTTTCAGATTGCACGTCCCCGGTTGGAATTATGATGTTTGGAGATGGGCTTCGTGACATGAAACCGATTGTTGATGCATTGGATTATGCTATGCCTGCGGAAACTGTCATTGTGGGTGATGAGAGATGTCGCATTTTATATAGAAGTGAGAATGAGTCTAGAAATGTCTGTGGGAATGCAAAATACTTTACCGATGCTGTTGCTCTTATATTTGCCAAGGATAAAGACAAGCCACATGGTATTGGAGACATTCAATTCCAAATTGCATTATCAAATGGAGTGTCCACAGTCGGTTCCCAGCACAAGGCTGTTTCTGTCAAAGTGAATAACTGTGAGCGTTCTACTTGGCTTACTGCTAGAAGAGAGGGACACCCAGAAATTCTGGACGGTCAACAAATTCTCGATGATATCAACGATGAGTTAGCAAATCACGTAGATTCTTCAGATCTGTACATTGGGGTTACGAAACATAGAAAAATCTCTATTGGGTCAGAGAAGCCAAGGTGGATCACGTCCTTGGAATACCATGGAGTTGTAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FIST FIST_C

Protein Analysis

292

Amino Acids

32.22

Weight (kDa)

5.42

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63520
fragaria_vesca	FvH4_5g08560
malus_domestica	MD06G1139200.v1.1 MD06G1139600.v1.1 MD06G1139800.v1.1 MD14G1155200.v1.1
prunus_persica	Prupe.5G149200_v2.0.a1 Prupe.5G149200_v2.0.a1
pyrus_communis	pycom06g13010 pycom06g13020 pycom14g12900
rosa_chinensis	RchiOBHm_Chr7g0189831
rosa_laevigata	RLG00000004583
rosa_multiflora	Rmu_sc0000512.1_g000017 Rmu_sc0003419.1_g000040
rosa_roxburghii	Rroxscaffold_3G00265100
rosa_rugosa	Rorug06G0500300 Rorug06G0500300
rosa_samantha	Rh7AG105500 Rh7BG108300 Rh7CG110300 Rh7DG108600
rosa_wichuraiana	Rw7G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	254, 431
AclWI	GGATC	3 cut(s)	269, 282, 848
AcsI	RAATTY	4 cut(s)	119, 299, 711, 729
AcuI	CTGAAG	1 cut(s)	759
AfaI	GTAC	1 cut(s)	785
AfiI	CCNNNNNNNGG	1 cut(s)	637
AgsI	TTSAA	5 cut(s)	28, 84, 124, 238, 587
AjiI	CACGTC	3 cut(s)	161, 348, 846
AjnI	CCWGG	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	3 cut(s)	269, 282, 848
AlwNI	CAGNNNCTG	1 cut(s)	332
Ama87I	CYCGRG	1 cut(s)	279
ApoI	RAATTY	4 cut(s)	119, 299, 711, 729
ArsI	GACNNNNNNTTYG	2 cut(s)	599, 631
AspS9I	GGNCC	1 cut(s)	54
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	164, 461
AvaI	CYCGRG	1 cut(s)	279
AvaII	GGWCC	1 cut(s)	54
BamHI	GGATCC	1 cut(s)	274
BccI	CCATC	3 cut(s)	149, 257, 371
BceAI	ACGGC	1 cut(s)	217
BcgI	CGANNNNNNTGC	2 cut(s)	515, 549
BciT130I	CCWGG	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	1 cut(s)	573
BfaI	CTAG	2 cut(s)	492, 690
BglII	AGATCT	1 cut(s)	778
Bme1390I	CCNGG	2 cut(s)	231, 353
Bme18I	GGWCC	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	279
BmgBI	CACGTC	3 cut(s)	161, 348, 846
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	3 cut(s)	55, 276, 628
BmrFI	CCNGG	2 cut(s)	231, 353
BmsI	GCATC	6 cut(s)	94, 181, 213, 235, 397, 517
BpuMI	CCSGG	1 cut(s)	353
BsaAI	YACGTR	1 cut(s)	766
BsaJI	CCNNGG	5 cut(s)	351, 549, 833, 849, 859
Bsc4I	CCNNNNNNNGG	1 cut(s)	637
Bse1I	ACTGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	5 cut(s)	351, 549, 833, 849, 859
BseGI	GGATG	3 cut(s)	196, 204, 249
BseLI	CCNNNNNNNGG	1 cut(s)	637
BseNI	ACTGG	1 cut(s)	57
BseYI	CCCAGC	1 cut(s)	630
BsiHKCI	CYCGRG	1 cut(s)	279
BsiSI	CCGG	1 cut(s)	353
BslFI	GGGAC	2 cut(s)	334, 714
BslI	CCNNNNNNNGG	1 cut(s)	637
BsmAI	GTCTC	1 cut(s)	573
BsmFI	GGGAC	2 cut(s)	334, 714
BsmI	GAATGC	1 cut(s)	514
BsoBI	CYCGRG	1 cut(s)	279
Bsp1407I	TGTACA	1 cut(s)	783
Bsp143I	GATC	3 cut(s)	274, 778, 840
Bsp19I	CCATGG	1 cut(s)	859
BspACI	CCGC	2 cut(s)	254, 431
BspLI	GGNNCC	3 cut(s)	55, 276, 628
BspPI	GGATC	3 cut(s)	269, 282, 848
BsrGI	TGTACA	1 cut(s)	783
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	5 cut(s)	351, 549, 833, 849, 859
BssMI	GATC	3 cut(s)	274, 778, 840
BssT1I	CCWWGG	4 cut(s)	549, 833, 849, 859
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	5 cut(s)	217, 439, 622, 665, 722
Bst6I	CTCTTC	2 cut(s)	94, 688
BstAUI	TGTACA	1 cut(s)	783
BstBAI	YACGTR	1 cut(s)	766
BstC8I	GCNNGC	1 cut(s)	429
BstDSI	CCRYGG	1 cut(s)	859
BstF5I	GGATG	3 cut(s)	196, 204, 249
BstKTI	GATC	3 cut(s)	277, 781, 843
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	3 cut(s)	274, 778, 840
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	2 cut(s)	229, 351
BstX2I	RGATCY	2 cut(s)	274, 778
BstYI	RGATCY	2 cut(s)	274, 778
BtgI	CCRYGG	1 cut(s)	859
BtrI	CACGTC	3 cut(s)	161, 348, 846
BtsCI	GGATG	3 cut(s)	196, 204, 249
Cac8I	GCNNGC	1 cut(s)	429
CaiI	CAGNNNCTG	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	784
CviAII	CATG	5 cut(s)	116, 307, 391, 569, 860
CviJI	RGCY	7 cut(s)	222, 329, 382, 565, 641, 682, 832
CviKI_1	RGCY	7 cut(s)	222, 329, 382, 565, 641, 682, 832
CviQI	GTAC	1 cut(s)	784
DpnI	GATC	3 cut(s)	276, 780, 842
DpnII	GATC	3 cut(s)	274, 778, 840
Eam1104I	CTCTTC	2 cut(s)	94, 688
EarI	CTCTTC	2 cut(s)	94, 688
Eco130I	CCWWGG	4 cut(s)	549, 833, 849, 859
Eco32I	GATATC	2 cut(s)	39, 742
Eco47I	GGWCC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	759
Eco88I	CYCGRG	1 cut(s)	279
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	229
EcoRV	GATATC	2 cut(s)	39, 742
EcoT14I	CCWWGG	4 cut(s)	549, 833, 849, 859
EcoT22I	ATGCAT	1 cut(s)	412
ErhI	CCWWGG	4 cut(s)	549, 833, 849, 859
FaeI	CATG	5 cut(s)	119, 310, 394, 572, 863
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FaqI	GGGAC	2 cut(s)	334, 714
FatI	CATG	5 cut(s)	115, 306, 390, 568, 859
FauI	CCCGC	1 cut(s)	261
FokI	GGATG	3 cut(s)	191, 203, 236
FspBI	CTAG	2 cut(s)	492, 690
GsaI	CCCAGC	1 cut(s)	634
HapII	CCGG	1 cut(s)	353
Hin1II	CATG	5 cut(s)	119, 310, 394, 572, 863
HincII	GTYRAC	1 cut(s)	725
HindII	GTYRAC	1 cut(s)	725
HinfI	GANTC	2 cut(s)	488, 770
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	2 cut(s)	164, 461
Hpy166II	GTNNAC	2 cut(s)	618, 725
Hpy188I	TCNGA	3 cut(s)	340, 778, 826
Hpy188III	TCNNGA	5 cut(s)	281, 386, 492, 716, 734
Hpy8I	GTNNAC	2 cut(s)	618, 725
HpyCH4III	ACNGT	5 cut(s)	217, 439, 622, 665, 722
HpyCH4IV	ACGT	4 cut(s)	160, 347, 765, 845
HpyCH4V	TGCA	5 cut(s)	34, 345, 410, 512, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpySE526I	ACGT	4 cut(s)	160, 347, 765, 845
Hsp92II	CATG	5 cut(s)	119, 310, 394, 572, 863
Kzo9I	GATC	3 cut(s)	274, 778, 840
LpnPI	CCDG	8 cut(s)	70, 216, 243, 366, 441, 644, 701, 720
LweI	GCATC	6 cut(s)	94, 181, 213, 235, 397, 517
MaeI	CTAG	2 cut(s)	492, 690
MaeII	ACGT	4 cut(s)	160, 347, 765, 845
MaeIII	GTNAC	3 cut(s)	258, 386, 793
MalI	GATC	3 cut(s)	276, 780, 842
MboI	GATC	3 cut(s)	274, 778, 840
MboII	GAAGA	4 cut(s)	111, 179, 705, 765
MflI	RGATCY	2 cut(s)	274, 778
MluCI	AATT	9 cut(s)	29, 47, 119, 299, 360, 587, 594, 711, 729
MlyI	GAGTC	1 cut(s)	497
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	5 cut(s)	121, 136, 288, 340, 691
Mph1103I	ATGCAT	1 cut(s)	412
MseI	TTAA	2 cut(s)	132, 315
MspA1I	CMGCKG	1 cut(s)	256
MspI	CCGG	1 cut(s)	353
MspR9I	CCNGG	2 cut(s)	231, 353
Mva1269I	GAATGC	1 cut(s)	514
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	428
NciI	CCSGG	1 cut(s)	353
NcoI	CCATGG	1 cut(s)	859
NdeII	GATC	3 cut(s)	274, 778, 840
NlaIII	CATG	5 cut(s)	119, 310, 394, 572, 863
NlaIV	GGNNCC	3 cut(s)	55, 276, 628
NmuCI	GTSAC	1 cut(s)	386
NsiI	ATGCAT	1 cut(s)	412
PaeR7I	CTCGAG	1 cut(s)	279
PctI	GAATGC	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	770
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
Ppu21I	YACGTR	1 cut(s)	766
Psp6I	CCWGG	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	55, 276, 628
PspPI	GGNCC	1 cut(s)	54
PstNI	CAGNNNCTG	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	274, 778
RsaI	GTAC	1 cut(s)	785
RsaNI	GTAC	1 cut(s)	784
SaqAI	TTAA	2 cut(s)	132, 315
Sau3AI	GATC	3 cut(s)	274, 778, 840
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	497
ScrFI	CCNGG	2 cut(s)	231, 353
SetI	ASST	7 cut(s)	132, 147, 163, 350, 768, 839, 848
SfaNI	GCATC	6 cut(s)	94, 181, 213, 235, 397, 517
Sfr274I	CTCGAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	54
SlaI	CTCGAG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	9 cut(s)	29, 47, 119, 299, 360, 587, 594, 711, 729
SsiI	CCGC	2 cut(s)	254, 431
SspI	AATATT	1 cut(s)	93
SspMI	CTAG	2 cut(s)	492, 690
StyD4I	CCNGG	2 cut(s)	229, 351
StyI	CCWWGG	4 cut(s)	549, 833, 849, 859
TaaI	ACNGT	5 cut(s)	217, 439, 622, 665, 722
TaiI	ACGT	4 cut(s)	163, 350, 768, 848
TaqI	TCGA	3 cut(s)	41, 280, 735
TasI	AATT	9 cut(s)	29, 47, 119, 299, 360, 587, 594, 711, 729
TatI	WGTACW	1 cut(s)	783
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	2 cut(s)	132, 315
Tru9I	TTAA	2 cut(s)	132, 315
TseFI	GTSAC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	5 cut(s)	58, 132, 180, 292, 407
VpaK11BI	GGWCC	1 cut(s)	54
XapI	RAATTY	4 cut(s)	119, 299, 711, 729
XbaI	TCTAGA	1 cut(s)	491
XhoI	CTCGAG	1 cut(s)	279
XspI	CTAG	2 cut(s)	492, 690
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.