Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008756

Physical Location & Seq

Genomic Coordinates Forward (+)

13597055 .. 13601259

Gene Structure 4205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G149200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1620 bp

ATGGACGAGGCATCGTCGTCGTCCTCGACGATCAGAAACAAAAACGACATGAAACGGCCCCAAACGACGGCGGCAGGGTTGTTATCGCCGATAAACGACGACCTTCTCCACAACATCCTCTCGCGCCTGCCCGCCTTATCCTTCGCATCGGCGGCGTGCGTTAGCAAATCCTGGAACCAAATCTGCAGTCGAATCCTCTCTCGCCCAAAACTCGCCTCTGCCCTCTCTCTCCACCCCTCGCCTAAGGCTGCTGTGAAAGAGGTTATCGAGAAGGTTCTAGCTGAGCCGATACGACCTCATTTCGTTGTAGCTAATATTGGCAGTGGGTTTCGCTTGTATGACATTTTCAGGCTTATATCAAAAAAATTGGGGTCCAGCGTTCCGTTTATCATTTCTACTTCAAGCGGAATTATTGGAAGAGATGCTCTTACCCATGAATTCAAAGAGGTTAAGTGGGGAGATGTTTGTGGTGATGGAAGTGATGAAGATTGCTCTATACCAGCAAAGGATGTGAACTACGGCATCCTTTTGACTGTTGGCTTTGTGCCGGGATTGAAAGTTGATGCTATCCCACTGTTAAGATCAACAAAGGAACCTCGAGAGGTCTTGCTTGATAAATTCATCATGGATATTAAAGATTACACAGCCTCTGTTTCAGGTTGCACCTTCCCTGTTGCAATTATGATGTTTGGAGATGGGCTTATTAACATGAAACCAATAATTGATGCATTGGATTATTCTATGCCTATGGAAACGGTGATTGTGGGTGATGAGAGAGGTCGCTTTTTATATAGAAGTGGGAACGAGTCTAGAAATGTCTGTGGGAGTGCAAAATACTTTTCAGATGCTGTTGCTCTTATATTTGCCAGGGACAAAGACAAGCCATCTGGTATCGGAGATATTCAATTCCAAATTGCATTGTCAAAAGGAGTGTCAACAGTAGGTTCCAGGCACAAGGCTGTTTCTGTTAAAGAGAACCACTGTGAGCATTCTACTTGGCTAACTGCTAGAAGAGAAGGACACCCAGAGACTCTTGATGGTCAACAACTTCTTAATGACATCAACGATGAGTTAGAAGATTATGCTGATTCTTCTGATCTATACATTGGGGTTATAAAACGAAGAAATATCTCCATGGGATCAGAGAAGCCAAGAATGATTACGTCCTTGGAATTCCACGGAGTTGTAGGAGGAGATGATGAGTACCTTTATGTCAGTGGTGTTGGCATTAAAACTGCCGATTACTTCCATTTCTATCGTTCTGACCCCGAATCTGCATTATCTTCATGTAACAATGTCTCCTTAAGCCTTAAAAAGTTGAAGTCAGATGAAGATTCAAAACATCGTCGTCATATAAGTGAAGTATTTGGGGGTTTTATGTTCGCTTGTTGTGGCCGTGGTGAGTCATTCTTCGGACGCGTCAATGTTGATGGATCTCCTTTCGTGGAGAACTTCCCTGGGGTTCCACTGGCAGGAATATTTTGCGGGGGAGAAATTGGACGTGGCCCTTCAAGGTTGACTGGGGAAGCACATAAAGATAGTGATGCTCGTTGCAATATGCATGTTTACAGCACCATTTATCTTGTACTATCATATACTCCATTACCATTGGAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FIST FIST_C

Protein Analysis

540

Amino Acids

59.04

Weight (kDa)

6.23

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63520
fragaria_vesca	FvH4_5g08560
malus_domestica	MD06G1139200.v1.1 MD06G1139600.v1.1 MD06G1139800.v1.1 MD14G1155200.v1.1
prunus_persica	Prupe.5G149200_v2.0.a1 Prupe.5G149200_v2.0.a1
pyrus_communis	pycom06g13010 pycom06g13020 pycom14g12900
rosa_chinensis	RchiOBHm_Chr7g0189831
rosa_laevigata	RLG00000004583
rosa_multiflora	Rmu_sc0000512.1_g000017 Rmu_sc0003419.1_g000040
rosa_roxburghii	Rroxscaffold_3G00265100
rosa_rugosa	Rorug06G0500300 Rorug06G0500300
rosa_samantha	Rh7AG105500 Rh7BG108300 Rh7CG110300 Rh7DG108600
rosa_wichuraiana	Rw7G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1115
AccII	CGCG	2 cut(s)	124, 1419
AciI	CCGC	5 cut(s)	71, 132, 152, 405, 1485
AclWI	GGATC	2 cut(s)	1147, 1441
AcoI	YGGCCR	1 cut(s)	1393
AcsI	RAATTY	3 cut(s)	437, 617, 1172
AfaI	GTAC	2 cut(s)	1205, 1587
AfiI	CCNNNNNNNGG	2 cut(s)	67, 1472
AflII	CTTAAG	1 cut(s)	1303
AflIII	ACRYGT	1 cut(s)	1417
AgsI	TTSAA	7 cut(s)	402, 442, 556, 905, 1321, 1338, 1512
AjiI	CACGTC	1 cut(s)	1502
AjnI	CCWGG	4 cut(s)	170, 866, 947, 1456
AluBI	AGCT	2 cut(s)	281, 311
AluI	AGCT	2 cut(s)	281, 311
Alw26I	GTCTC	2 cut(s)	1022, 1303
AlwI	GGATC	2 cut(s)	1147, 1441
AlwNI	CAGNNNCTG	2 cut(s)	650, 848
Ama87I	CYCGRG	1 cut(s)	597
AoxI	GGCC	3 cut(s)	56, 1393, 1504
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	3 cut(s)	437, 617, 1172
ArsI	GACNNNNNNTTYG	4 cut(s)	172, 204, 917, 949
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	3 cut(s)	57, 372, 1505
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	4 cut(s)	482, 769, 779, 1412
AvaI	CYCGRG	1 cut(s)	597
AvaII	GGWCC	1 cut(s)	372
AxyI	CCTNAGG	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	5 cut(s)	467, 689, 892, 1031, 1424
BceAI	ACGGC	4 cut(s)	71, 84, 535, 1380
BcgI	CGANNNNNNTGC	1 cut(s)	34
BciT130I	CCWGG	4 cut(s)	172, 868, 949, 1458
BcnI	CCSGG	1 cut(s)	549
BcoDI	GTCTC	2 cut(s)	1022, 1303
BfaI	CTAG	3 cut(s)	278, 810, 1008
BfmI	CTRYAG	1 cut(s)	184
BfrI	CTTAAG	1 cut(s)	1303
BisI	GCNGC	3 cut(s)	72, 153, 249
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	3 cut(s)	73, 154, 250
Bme1390I	CCNGG	5 cut(s)	172, 549, 868, 949, 1458
Bme18I	GGWCC	1 cut(s)	372
BmeT110I	CYCGRG	1 cut(s)	597
BmgBI	CACGTC	1 cut(s)	1502
BmgT120I	GGNCC	3 cut(s)	57, 372, 1505
BmiI	GGNNCC	6 cut(s)	59, 176, 373, 594, 946, 1464
BmrFI	CCNGG	5 cut(s)	172, 549, 868, 949, 1458
BmrI	ACTGGG	1 cut(s)	1530
BmsI	GCATC	8 cut(s)	20, 155, 412, 531, 553, 715, 835, 1534
BmuI	ACTGGG	1 cut(s)	1530
Bpu1102I	GCTNAGC	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	549
BsaJI	CCNNGG	7 cut(s)	867, 1134, 1167, 1177, 1396, 1456, 1457
BsaXI	ACNNNNNCTCC	2 cut(s)	1283, 1313
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 1472
Bse1I	ACTGG	2 cut(s)	1473, 1525
Bse21I	CCTNAGG	1 cut(s)	243
BseBI	CCWGG	4 cut(s)	172, 868, 949, 1458
BseDI	CCNNGG	7 cut(s)	867, 1134, 1167, 1177, 1396, 1456, 1457
BseGI	GGATG	3 cut(s)	114, 514, 522
BseLI	CCNNNNNNNGG	2 cut(s)	67, 1472
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	1473, 1525
BseRI	GAGGAG	1 cut(s)	1206
BseXI	GCAGC	1 cut(s)	235
Bsh1236I	CGCG	2 cut(s)	124, 1419
BshFI	GGCC	3 cut(s)	58, 1395, 1506
BsiHKCI	CYCGRG	1 cut(s)	597
BsiSI	CCGG	1 cut(s)	548
BslFI	GGGAC	1 cut(s)	884
BslI	CCNNNNNNNGG	2 cut(s)	67, 1472
BsmAI	GTCTC	2 cut(s)	1022, 1303
BsmFI	GGGAC	1 cut(s)	884
BsmI	GAATGC	1 cut(s)	988
BsnI	GGCC	3 cut(s)	58, 1395, 1506
BsoBI	CYCGRG	1 cut(s)	597
Bsp143I	GATC	5 cut(s)	30, 581, 1096, 1139, 1433
Bsp1720I	GCTNAGC	1 cut(s)	282
Bsp19I	CCATGG	1 cut(s)	1134
BspACI	CCGC	5 cut(s)	71, 132, 152, 405, 1485
BspANI	GGCC	3 cut(s)	58, 1395, 1506
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	2 cut(s)	124, 1419
BspLI	GGNNCC	6 cut(s)	59, 176, 373, 594, 946, 1464
BspMAI	CTGCAG	1 cut(s)	188
BspPI	GGATC	2 cut(s)	1147, 1441
BspTI	CTTAAG	1 cut(s)	1303
BsrI	ACTGG	2 cut(s)	1473, 1525
BssECI	CCNNGG	7 cut(s)	867, 1134, 1167, 1177, 1396, 1456, 1457
BssMI	GATC	5 cut(s)	30, 581, 1096, 1139, 1433
BssT1I	CCWWGG	2 cut(s)	1134, 1167
Bst2UI	CCWGG	4 cut(s)	172, 868, 949, 1458
Bst4CI	ACNGT	5 cut(s)	535, 576, 757, 940, 983
Bst6I	CTCTTC	2 cut(s)	412, 1006
BstAFI	CTTAAG	1 cut(s)	1303
BstC8I	GCNNGC	3 cut(s)	128, 132, 157
BstDEI	CTNAG	2 cut(s)	243, 282
BstDSI	CCRYGG	3 cut(s)	1134, 1177, 1396
BstF5I	GGATG	3 cut(s)	114, 514, 522
BstFNI	CGCG	2 cut(s)	124, 1419
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	5 cut(s)	33, 584, 1099, 1142, 1436
BstMAI	GTCTC	2 cut(s)	1022, 1303
BstMBI	GATC	5 cut(s)	30, 581, 1096, 1139, 1433
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	4 cut(s)	172, 868, 949, 1458
BstNSI	RCATGY	1 cut(s)	1565
BstSCI	CCNGG	5 cut(s)	170, 547, 866, 947, 1456
BstSFI	CTRYAG	1 cut(s)	184
BstUI	CGCG	2 cut(s)	124, 1419
BstV1I	GCAGC	1 cut(s)	235
BstX2I	RGATCY	1 cut(s)	1433
BstYI	RGATCY	1 cut(s)	1433
Bsu36I	CCTNAGG	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	58, 1395, 1506
BtgI	CCRYGG	3 cut(s)	1134, 1177, 1396
BtrI	CACGTC	1 cut(s)	1502
BtsCI	GGATG	3 cut(s)	114, 514, 522
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	5 cut(s)	328, 572, 979, 1222, 1466
Cac8I	GCNNGC	3 cut(s)	128, 132, 157
CaiI	CAGNNNCTG	2 cut(s)	650, 848
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	3 cut(s)	57, 372, 1505
CseI	GACGC	2 cut(s)	1408, 1425
Csp6I	GTAC	2 cut(s)	1204, 1586
CviAII	CATG	7 cut(s)	49, 434, 625, 709, 1135, 1287, 1562
CviQI	GTAC	2 cut(s)	1204, 1586
DdeI	CTNAG	2 cut(s)	243, 282
DpnI	GATC	5 cut(s)	32, 583, 1098, 1141, 1435
DpnII	GATC	5 cut(s)	30, 581, 1096, 1139, 1433
EaeI	YGGCCR	1 cut(s)	1393
Eam1104I	CTCTTC	2 cut(s)	412, 1006
EarI	CTCTTC	2 cut(s)	412, 1006
Eco130I	CCWWGG	2 cut(s)	1134, 1167
Eco47I	GGWCC	1 cut(s)	372
Eco81I	CCTNAGG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	597
EcoRI	GAATTC	2 cut(s)	437, 1172
EcoRII	CCWGG	4 cut(s)	170, 866, 947, 1456
EcoT14I	CCWWGG	2 cut(s)	1134, 1167
EcoT22I	ATGCAT	2 cut(s)	730, 1563
ErhI	CCWWGG	2 cut(s)	1134, 1167
FaeI	CATG	7 cut(s)	52, 437, 628, 712, 1138, 1290, 1565
FaqI	GGGAC	1 cut(s)	884
FatI	CATG	7 cut(s)	48, 433, 624, 708, 1134, 1286, 1561
FauI	CCCGC	2 cut(s)	139, 1478
Fnu4HI	GCNGC	3 cut(s)	72, 153, 249
FokI	GGATG	3 cut(s)	101, 509, 521
Fsp4HI	GCNGC	3 cut(s)	72, 153, 249
FspBI	CTAG	3 cut(s)	278, 810, 1008
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	3 cut(s)	72, 153, 249
HaeIII	GGCC	3 cut(s)	58, 1395, 1506
HapII	CCGG	1 cut(s)	548
HgaI	GACGC	2 cut(s)	1408, 1425
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	7 cut(s)	52, 437, 628, 712, 1138, 1290, 1565
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HincII	GTYRAC	3 cut(s)	936, 1043, 1518
HindII	GTYRAC	3 cut(s)	936, 1043, 1518
HinfI	GANTC	7 cut(s)	192, 806, 1030, 1088, 1271, 1334, 1403
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	4 cut(s)	482, 769, 779, 1412
Hpy166II	GTNNAC	5 cut(s)	514, 936, 1043, 1518, 1567
Hpy188I	TCNGA	8 cut(s)	35, 844, 896, 1096, 1144, 1264, 1327, 1415
Hpy188III	TCNNGA	4 cut(s)	268, 599, 810, 1034
Hpy8I	GTNNAC	5 cut(s)	514, 936, 1043, 1518, 1567
Hpy99I	CGWCG	6 cut(s)	19, 22, 31, 70, 101, 1350
HpyAV	CCTTC	6 cut(s)	113, 151, 265, 676, 1010, 1518
HpyCH4III	ACNGT	5 cut(s)	535, 576, 757, 940, 983
HpyCH4IV	ACGT	2 cut(s)	1163, 1501
HpyCH4V	TGCA	9 cut(s)	186, 663, 677, 728, 830, 917, 1277, 1554, 1561
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	243, 282
HpySE526I	ACGT	2 cut(s)	1163, 1501
Hsp92II	CATG	7 cut(s)	52, 437, 628, 712, 1138, 1290, 1565
HspAI	GCGC	1 cut(s)	124
Kzo9I	GATC	5 cut(s)	30, 581, 1096, 1139, 1433
LmnI	GCTCC	1 cut(s)	1612
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	8 cut(s)	20, 155, 412, 531, 553, 715, 835, 1534
MaeI	CTAG	3 cut(s)	278, 810, 1008
MaeII	ACGT	2 cut(s)	1163, 1501
MaeIII	GTNAC	1 cut(s)	1289
MalI	GATC	5 cut(s)	32, 583, 1098, 1141, 1435
MboI	GATC	5 cut(s)	30, 581, 1096, 1139, 1433
MboII	GAAGA	9 cut(s)	429, 497, 1023, 1083, 1088, 1134, 1275, 1343, 1402
MflI	RGATCY	1 cut(s)	1433
MluI	ACGCGT	1 cut(s)	1417
MlyI	GAGTC	3 cut(s)	815, 1024, 1412
Mph1103I	ATGCAT	2 cut(s)	730, 1563
MseI	TTAA	9 cut(s)	450, 578, 633, 705, 969, 1053, 1230, 1304, 1311
MslI	CAYNNNNRTG	1 cut(s)	1356
MspCI	CTTAAG	1 cut(s)	1303
MspI	CCGG	1 cut(s)	548
MspR9I	CCNGG	5 cut(s)	172, 549, 868, 949, 1458
Mva1269I	GAATGC	1 cut(s)	988
MvaI	CCWGG	4 cut(s)	172, 868, 949, 1458
MvnI	CGCG	2 cut(s)	124, 1419
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	549
NcoI	CCATGG	1 cut(s)	1134
NdeII	GATC	5 cut(s)	30, 581, 1096, 1139, 1433
NlaIII	CATG	7 cut(s)	52, 437, 628, 712, 1138, 1290, 1565
NlaIV	GGNNCC	6 cut(s)	59, 176, 373, 594, 946, 1464
NsiI	ATGCAT	2 cut(s)	730, 1563
NspI	RCATGY	1 cut(s)	1565
PaeR7I	CTCGAG	1 cut(s)	597
PasI	CCCWGGG	1 cut(s)	1457
PcsI	WCGNNNNNNNCGW	2 cut(s)	23, 26
PctI	GAATGC	1 cut(s)	988
PfeI	GAWTC	4 cut(s)	192, 1088, 1271, 1334
PfoI	TCCNGGA	1 cut(s)	170
PkrI	GCNGC	3 cut(s)	73, 154, 250
PleI	GAGTC	3 cut(s)	814, 1024, 1411
PpsI	GAGTC	3 cut(s)	814, 1024, 1411
PsiI	TTATAA	1 cut(s)	1115
Psp6I	CCWGG	4 cut(s)	170, 866, 947, 1456
PspGI	CCWGG	4 cut(s)	170, 866, 947, 1456
PspN4I	GGNNCC	6 cut(s)	59, 176, 373, 594, 946, 1464
PspPI	GGNCC	3 cut(s)	57, 372, 1505
PstI	CTGCAG	1 cut(s)	188
PstNI	CAGNNNCTG	2 cut(s)	650, 848
PsuI	RGATCY	1 cut(s)	1433
RsaI	GTAC	2 cut(s)	1205, 1587
RsaNI	GTAC	2 cut(s)	1204, 1586
RseI	CAYNNNNRTG	1 cut(s)	1356
SaqAI	TTAA	9 cut(s)	450, 578, 633, 705, 969, 1053, 1230, 1304, 1311
SatI	GCNGC	3 cut(s)	72, 153, 249
Sau3AI	GATC	5 cut(s)	30, 581, 1096, 1139, 1433
Sau96I	GGNCC	3 cut(s)	57, 372, 1505
SchI	GAGTC	3 cut(s)	815, 1024, 1412
ScrFI	CCNGG	5 cut(s)	172, 549, 868, 949, 1458
SfaNI	GCATC	8 cut(s)	20, 155, 412, 531, 553, 715, 835, 1534
SfcI	CTRYAG	1 cut(s)	184
Sfr274I	CTCGAG	1 cut(s)	597
SinI	GGWCC	1 cut(s)	372
SlaI	CTCGAG	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	1356
SmlI	CTYRAG	2 cut(s)	597, 1303
SmoI	CTYRAG	2 cut(s)	597, 1303
SsiI	CCGC	5 cut(s)	71, 132, 152, 405, 1485
SspI	AATATT	2 cut(s)	316, 1479
SspMI	CTAG	3 cut(s)	278, 810, 1008
StyD4I	CCNGG	5 cut(s)	170, 547, 866, 947, 1456
StyI	CCWWGG	2 cut(s)	1134, 1167
TaaI	ACNGT	5 cut(s)	535, 576, 757, 940, 983
TaiI	ACGT	2 cut(s)	1166, 1504
TaqI	TCGA	4 cut(s)	26, 190, 267, 598
TatI	WGTACW	1 cut(s)	1585
TauI	GCSGC	2 cut(s)	74, 155
TfiI	GAWTC	4 cut(s)	192, 1088, 1271, 1334
Tru1I	TTAA	9 cut(s)	450, 578, 633, 705, 969, 1053, 1230, 1304, 1311
Tru9I	TTAA	9 cut(s)	450, 578, 633, 705, 969, 1053, 1230, 1304, 1311
TscAI	CASTG	5 cut(s)	328, 579, 986, 1222, 1473
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	7 cut(s)	65, 450, 498, 610, 725, 1275, 1344
TspGWI	ACGGA	2 cut(s)	372, 1194
TspRI	CASTG	5 cut(s)	328, 579, 986, 1222, 1473
Vha464I	CTTAAG	1 cut(s)	1303
VpaK11BI	GGWCC	1 cut(s)	372
XapI	RAATTY	3 cut(s)	437, 617, 1172
XbaI	TCTAGA	1 cut(s)	809
XceI	RCATGY	1 cut(s)	1565
XhoI	CTCGAG	1 cut(s)	597
XspI	CTAG	3 cut(s)	278, 810, 1008
Zsp2I	ATGCAT	2 cut(s)	730, 1563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.