Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008756

Physical Location & Seq

Genomic Coordinates Forward (+)

28390842 .. 28395359

Gene Structure 4518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1139200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGGACGGGGCATCGTCGTCGGCGGCGGCGATAAAAACCGACACAAAACGGCCCCAAACGGCGGCGGCAGGGTTGTTTTCGCCGATAAACGACGACCTTCTCCACAACATCCTCTCGCACCTACCCGCCTTATCCTTCGCATCAGCGGCGTGCGTTAGCAAATCCTGGAACCAAATCTGCAGCCGAATCCTCACTCGCCCGAAGCTCGCCTCCGCCCTCTCTCTCCACCCCTCGCCTAAGGTTGCAGTGAAGGAGGTTATCGAGAAGATATCGAAAAAATTGGGGTCCAGTATTCCATTCATCATTTCTACTTCAAGTGGAATATTTGGAAGAGATGCTCTTACCCATGAATTCAAAGAGGTTAAGTGGGGAGAGGTTTGTGGTGATGGACGTGATGAAGATTGCTCTATACCAACAAAGGATGCGAACTACGGCATCCTTTTGACTGTTGGCTTTGTGCCAGGATTGAAAGTTGATGCCATCCCGCTGTTACGAACAATAAAGGATCCTCGAGAAGTCTTGCTTGATAAATTCATCATGGATATTAAGGATTACACAGCCTCTGTTTCAGATTGCACGTCCCCGGTTGGAATTATGATGTTTGGAGTGAGTGGCTATTATGCTATGCCTGCGGAAACTGTCATTGTGGGTGATGAGAGATGTCGCATTTTATATAGAAGTGAGAATGAGTCTAGAAATGTCTGTGGGAATGCAAAATACTTTACCGATGCTGTTGCTCTTATATTTGCCAAGGATAAAGACAAGCCACATGAGGGACACCCAGAAATTCTGGACGGTCAACAAATTCTCGATGATATCAACGATGAGTTAGCAAATCACGTAGATTCTTCAGATCTGTACATTGGGGTTACGAAACATAGAAAAATCTCTATTGGGTCAGAGAAGCCAAGGTGGATCACGTCCTTGGAATACCATGGAGTTGTAGGAGGAGATGATCAGTACCTTTATGTCAGTGGCGTTGGCATAAAAACTGGTGATTACTTCAACTTCTATCGTTCAGACCCCGAAACTGCATTAGCTTCATGTAACAACATCTCTTCAAGCCTGAAAAAATTGAAGGTCAATGAAACTCAAAAACATCGCTGTCACATGAGCGAAGTATTTGGGGGTTTTCTGTTCGCTTGTTGTGGCCGTGGTGAGCCATTCTTTGGACGCGCCAATGTTGATGGCTCTCCCTTTGTGGAGAACTTCTCCAGGGTTCCGTTGGCAGGAATATTTTGCGGGGGAGAAATTGCACGTGGCTCTTTGAGGTTGACCGGGGAAGCTCAGAAAGATAGTGATGCTCGTTGCACTCTGCATGTCTACTGCACCATTTATCTTGTGCTGTCATATACTCCAGCACCAGCACCAGCACCATTGGAGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FIST FIST_C

Protein Analysis

463

Amino Acids

50.35

Weight (kDa)

6.13

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	30 - 62	3e-08	F-box domain
F-box-like	PF12937	31 - 62	2.8e-06	F-box-like
FIST_C	PF10442	319 - 420	1.7e-07	FIST C domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008756)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63520
fragaria_vesca	FvH4_5g08560
malus_domestica	MD06G1139200.v1.1 MD06G1139600.v1.1 MD06G1139800.v1.1 MD14G1155200.v1.1
prunus_persica	Prupe.5G149200_v2.0.a1 Prupe.5G149200_v2.0.a1
pyrus_communis	pycom06g13010 pycom06g13020 pycom14g12900
rosa_chinensis	RchiOBHm_Chr7g0189831
rosa_laevigata	RLG00000004583
rosa_multiflora	Rmu_sc0000512.1_g000017 Rmu_sc0003419.1_g000040
rosa_roxburghii	Rroxscaffold_3G00265100
rosa_rugosa	Rorug06G0500300 Rorug06G0500300
rosa_samantha	Rh7AG105500 Rh7BG108300 Rh7CG110300 Rh7DG108600
rosa_wichuraiana	Rw7G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1169
AccI	GTMKAC	1 cut(s)	1323
AccII	CGCG	1 cut(s)	1176
AclWI	GGATC	3 cut(s)	500, 513, 923
AcoI	YGGCCR	1 cut(s)	1150
AcsI	RAATTY	4 cut(s)	350, 530, 786, 804
AcuI	CTGAAG	1 cut(s)	834
AcvI	CACGTG	1 cut(s)	1259
AfaI	GTAC	2 cut(s)	860, 962
AfiI	CCNNNNNNNGG	4 cut(s)	61, 773, 1169, 1229
AgsI	TTSAA	6 cut(s)	315, 355, 469, 1006, 1062, 1078
AjiI	CACGTC	3 cut(s)	392, 579, 921
AjnI	CCWGG	3 cut(s)	164, 460, 1214
AluBI	AGCT	3 cut(s)	205, 1040, 1286
AluI	AGCT	3 cut(s)	205, 1040, 1286
AlwI	GGATC	3 cut(s)	500, 513, 923
AlwNI	CAGNNNCTG	1 cut(s)	563
Ama87I	CYCGRG	1 cut(s)	510
AoxI	GGCC	2 cut(s)	50, 1150
ApeKI	GCWGC	1 cut(s)	180
ApoI	RAATTY	4 cut(s)	350, 530, 786, 804
AspLEI	GCGC	1 cut(s)	1178
AspS9I	GGNCC	2 cut(s)	51, 285
AsuC2I	CCSGG	2 cut(s)	584, 1279
AsuHPI	GGTGA	4 cut(s)	395, 662, 1007, 1169
AvaI	CYCGRG	1 cut(s)	510
AvaII	GGWCC	1 cut(s)	285
AxyI	CCTNAGG	1 cut(s)	237
BamHI	GGATCC	1 cut(s)	505
BbrPI	CACGTG	1 cut(s)	1259
BbvI	GCAGC	1 cut(s)	192
BccI	CCATC	3 cut(s)	380, 488, 1181
BceAI	ACGGC	4 cut(s)	65, 75, 448, 1137
BcgI	CGANNNNNNTGC	3 cut(s)	34, 716, 750
BciT130I	CCWGG	3 cut(s)	166, 462, 1216
BclI	TGATCA	1 cut(s)	955
BcnI	CCSGG	2 cut(s)	584, 1279
BfaI	CTAG	1 cut(s)	693
BfmI	CTRYAG	1 cut(s)	178
BglII	AGATCT	1 cut(s)	853
BisI	GCNGC	6 cut(s)	24, 27, 63, 66, 147, 181
BlsI	GCNGC	6 cut(s)	25, 28, 64, 67, 148, 182
Bme1390I	CCNGG	5 cut(s)	166, 462, 584, 1216, 1279
Bme18I	GGWCC	1 cut(s)	285
BmeT110I	CYCGRG	1 cut(s)	510
BmgBI	CACGTC	3 cut(s)	392, 579, 921
BmgT120I	GGNCC	2 cut(s)	51, 285
BmiI	GGNNCC	5 cut(s)	53, 170, 286, 507, 1221
BmrFI	CCNGG	5 cut(s)	166, 462, 584, 1216, 1279
BmsI	GCATC	8 cut(s)	20, 149, 325, 412, 444, 466, 718, 1291
BplI	GAGNNNNNCTC	2 cut(s)	1196, 1228
BpmI	CTGGAG	2 cut(s)	1198, 1341
BpuMI	CCSGG	2 cut(s)	584, 1279
BsaAI	YACGTR	2 cut(s)	841, 1259
BsaJI	CCNNGG	8 cut(s)	582, 750, 908, 924, 934, 1153, 1215, 1278
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 773, 1169, 1229
Bse1I	ACTGG	2 cut(s)	288, 997
Bse21I	CCTNAGG	1 cut(s)	237
BseBI	CCWGG	3 cut(s)	166, 462, 1216
BseDI	CCNNGG	8 cut(s)	582, 750, 908, 924, 934, 1153, 1215, 1278
BseGI	GGATG	4 cut(s)	108, 427, 435, 480
BseLI	CCNNNNNNNGG	4 cut(s)	61, 773, 1169, 1229
BseMII	CTCAG	1 cut(s)	1301
BseNI	ACTGG	2 cut(s)	288, 997
BseRI	GAGGAG	1 cut(s)	963
BseXI	GCAGC	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	1312
Bsh1236I	CGCG	1 cut(s)	1176
BshFI	GGCC	2 cut(s)	52, 1152
BsiHKCI	CYCGRG	1 cut(s)	510
BsiSI	CCGG	2 cut(s)	584, 1278
BslFI	GGGAC	2 cut(s)	565, 789
BslI	CCNNNNNNNGG	4 cut(s)	61, 773, 1169, 1229
BsmFI	GGGAC	2 cut(s)	565, 789
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	2 cut(s)	52, 1152
BsoBI	CYCGRG	1 cut(s)	510
Bsp1407I	TGTACA	1 cut(s)	858
Bsp143I	GATC	4 cut(s)	505, 853, 915, 955
Bsp19I	CCATGG	1 cut(s)	934
BspANI	GGCC	2 cut(s)	52, 1152
BspCNI	CTCAG	1 cut(s)	1300
BspFNI	CGCG	1 cut(s)	1176
BspLI	GGNNCC	5 cut(s)	53, 170, 286, 507, 1221
BspMAI	CTGCAG	1 cut(s)	182
BspPI	GGATC	3 cut(s)	500, 513, 923
BsrGI	TGTACA	1 cut(s)	858
BsrI	ACTGG	2 cut(s)	288, 997
BssECI	CCNNGG	8 cut(s)	582, 750, 908, 924, 934, 1153, 1215, 1278
BssMI	GATC	4 cut(s)	505, 853, 915, 955
BssT1I	CCWWGG	4 cut(s)	750, 908, 924, 934
Bst2UI	CCWGG	3 cut(s)	166, 462, 1216
Bst4CI	ACNGT	3 cut(s)	448, 640, 797
Bst6I	CTCTTC	2 cut(s)	325, 1063
BstAUI	TGTACA	1 cut(s)	858
BstBAI	YACGTR	2 cut(s)	841, 1259
BstC8I	GCNNGC	3 cut(s)	151, 207, 630
BstDEI	CTNAG	2 cut(s)	237, 1287
BstDSI	CCRYGG	2 cut(s)	934, 1153
BstF5I	GGATG	4 cut(s)	108, 427, 435, 480
BstFNI	CGCG	1 cut(s)	1176
BstHHI	GCGC	1 cut(s)	1178
BstKTI	GATC	4 cut(s)	508, 856, 918, 958
BstMBI	GATC	4 cut(s)	505, 853, 915, 955
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 629
BstNI	CCWGG	3 cut(s)	166, 462, 1216
BstNSI	RCATGY	1 cut(s)	1322
BstSCI	CCNGG	5 cut(s)	164, 460, 582, 1214, 1277
BstSFI	CTRYAG	1 cut(s)	178
BstUI	CGCG	1 cut(s)	1176
BstV1I	GCAGC	1 cut(s)	192
BstX2I	RGATCY	2 cut(s)	505, 853
BstYI	RGATCY	2 cut(s)	505, 853
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	2 cut(s)	52, 1152
BtgI	CCRYGG	2 cut(s)	934, 1153
BtgZI	GCGATG	1 cut(s)	1085
BtrI	CACGTC	3 cut(s)	392, 579, 921
BtsCI	GGATG	4 cut(s)	108, 427, 435, 480
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	252, 979
Cac8I	GCNNGC	3 cut(s)	151, 207, 630
CaiI	CAGNNNCTG	1 cut(s)	563
CfoI	GCGC	1 cut(s)	1178
Cfr13I	GGNCC	2 cut(s)	51, 285
CseI	GACGC	1 cut(s)	1182
Csp6I	GTAC	2 cut(s)	859, 961
CviAII	CATG	7 cut(s)	347, 538, 770, 935, 1044, 1111, 1319
CviQI	GTAC	2 cut(s)	859, 961
DdeI	CTNAG	2 cut(s)	237, 1287
DpnI	GATC	4 cut(s)	507, 855, 917, 957
DpnII	GATC	4 cut(s)	505, 853, 915, 955
EaeI	YGGCCR	1 cut(s)	1150
Eam1104I	CTCTTC	2 cut(s)	325, 1063
EarI	CTCTTC	2 cut(s)	325, 1063
EciI	GGCGGA	1 cut(s)	202
Eco130I	CCWWGG	4 cut(s)	750, 908, 924, 934
Eco32I	GATATC	2 cut(s)	270, 817
Eco47I	GGWCC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	834
Eco72I	CACGTG	1 cut(s)	1259
Eco81I	CCTNAGG	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	510
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	3 cut(s)	164, 460, 1214
EcoRV	GATATC	2 cut(s)	270, 817
EcoT14I	CCWWGG	4 cut(s)	750, 908, 924, 934
ErhI	CCWWGG	4 cut(s)	750, 908, 924, 934
FaeI	CATG	7 cut(s)	350, 541, 773, 938, 1047, 1114, 1322
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FaqI	GGGAC	2 cut(s)	565, 789
FatI	CATG	7 cut(s)	346, 537, 769, 934, 1043, 1110, 1318
FauI	CCCGC	3 cut(s)	133, 492, 1235
FbaI	TGATCA	1 cut(s)	955
FblI	GTMKAC	1 cut(s)	1323
Fnu4HI	GCNGC	6 cut(s)	24, 27, 63, 66, 147, 181
FokI	GGATG	4 cut(s)	95, 422, 434, 467
Fsp4HI	GCNGC	6 cut(s)	24, 27, 63, 66, 147, 181
FspBI	CTAG	1 cut(s)	693
GlaI	GCGC	1 cut(s)	1177
GluI	GCNGC	6 cut(s)	24, 27, 63, 66, 147, 181
GsuI	CTGGAG	2 cut(s)	1198, 1341
HaeIII	GGCC	2 cut(s)	52, 1152
HapII	CCGG	2 cut(s)	584, 1278
HgaI	GACGC	1 cut(s)	1182
HhaI	GCGC	1 cut(s)	1178
Hin1II	CATG	7 cut(s)	350, 541, 773, 938, 1047, 1114, 1322
Hin6I	GCGC	1 cut(s)	1176
HinP1I	GCGC	1 cut(s)	1176
HincII	GTYRAC	2 cut(s)	800, 1275
HindII	GTYRAC	2 cut(s)	800, 1275
HinfI	GANTC	3 cut(s)	186, 689, 845
HpaII	CCGG	2 cut(s)	584, 1278
HphI	GGTGA	4 cut(s)	395, 662, 1007, 1169
Hpy166II	GTNNAC	3 cut(s)	800, 1275, 1324
Hpy188I	TCNGA	5 cut(s)	571, 853, 901, 1021, 1290
Hpy188III	TCNNGA	5 cut(s)	262, 512, 693, 791, 809
Hpy8I	GTNNAC	3 cut(s)	800, 1275, 1324
Hpy99I	CGWCG	3 cut(s)	19, 22, 95
HpyAV	CCTTC	4 cut(s)	107, 145, 244, 1072
HpyCH4III	ACNGT	3 cut(s)	448, 640, 797
HpyCH4IV	ACGT	5 cut(s)	391, 578, 840, 920, 1258
HpyCH4V	TGCA	9 cut(s)	180, 245, 576, 713, 1034, 1256, 1311, 1318, 1329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 629
HpyF3I	CTNAG	2 cut(s)	237, 1287
HpySE526I	ACGT	5 cut(s)	391, 578, 840, 920, 1258
Hsp92II	CATG	7 cut(s)	350, 541, 773, 938, 1047, 1114, 1322
HspAI	GCGC	1 cut(s)	1176
Ksp22I	TGATCA	1 cut(s)	955
Kzo9I	GATC	4 cut(s)	505, 853, 915, 955
LmnI	GCTCC	1 cut(s)	1381
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	8 cut(s)	20, 149, 325, 412, 444, 466, 718, 1291
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	5 cut(s)	391, 578, 840, 920, 1258
MaeIII	GTNAC	4 cut(s)	489, 868, 1046, 1106
MalI	GATC	4 cut(s)	507, 855, 917, 957
MboI	GATC	4 cut(s)	505, 853, 915, 955
MboII	GAAGA	5 cut(s)	277, 342, 410, 840, 1050
MflI	RGATCY	2 cut(s)	505, 853
MluCI	AATT	8 cut(s)	278, 350, 530, 591, 786, 804, 1073, 1251
MlyI	GAGTC	1 cut(s)	698
MmeI	TCCRAC	1 cut(s)	568
MseI	TTAA	2 cut(s)	363, 546
MspA1I	CMGCKG	2 cut(s)	146, 487
MspI	CCGG	2 cut(s)	584, 1278
MspR9I	CCNGG	5 cut(s)	166, 462, 584, 1216, 1279
Mva1269I	GAATGC	1 cut(s)	715
MvaI	CCWGG	3 cut(s)	166, 462, 1216
MvnI	CGCG	1 cut(s)	1176
MwoI	GCNNNNNNNGC	2 cut(s)	146, 629
NciI	CCSGG	2 cut(s)	584, 1279
NcoI	CCATGG	1 cut(s)	934
NdeII	GATC	4 cut(s)	505, 853, 915, 955
NlaIII	CATG	7 cut(s)	350, 541, 773, 938, 1047, 1114, 1322
NlaIV	GGNNCC	5 cut(s)	53, 170, 286, 507, 1221
NmuCI	GTSAC	1 cut(s)	1106
NspI	RCATGY	1 cut(s)	1322
PaeR7I	CTCGAG	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PctI	GAATGC	1 cut(s)	715
PfeI	GAWTC	2 cut(s)	186, 845
PflMI	CCANNNNNTGG	1 cut(s)	1169
PfoI	TCCNGGA	1 cut(s)	164
PkrI	GCNGC	6 cut(s)	25, 28, 64, 67, 148, 182
PleI	GAGTC	1 cut(s)	697
PmaCI	CACGTG	1 cut(s)	1259
PmlI	CACGTG	1 cut(s)	1259
PpsI	GAGTC	1 cut(s)	697
Ppu21I	YACGTR	2 cut(s)	841, 1259
Psp6I	CCWGG	3 cut(s)	164, 460, 1214
PspCI	CACGTG	1 cut(s)	1259
PspGI	CCWGG	3 cut(s)	164, 460, 1214
PspN4I	GGNNCC	5 cut(s)	53, 170, 286, 507, 1221
PspPI	GGNCC	2 cut(s)	51, 285
PstI	CTGCAG	1 cut(s)	182
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	2 cut(s)	505, 853
RsaI	GTAC	2 cut(s)	860, 962
RsaNI	GTAC	2 cut(s)	859, 961
SaqAI	TTAA	2 cut(s)	363, 546
SatI	GCNGC	6 cut(s)	24, 27, 63, 66, 147, 181
Sau3AI	GATC	4 cut(s)	505, 853, 915, 955
Sau96I	GGNCC	2 cut(s)	51, 285
SchI	GAGTC	1 cut(s)	698
ScrFI	CCNGG	5 cut(s)	166, 462, 584, 1216, 1279
SfaNI	GCATC	8 cut(s)	20, 149, 325, 412, 444, 466, 718, 1291
SfcI	CTRYAG	1 cut(s)	178
Sfr274I	CTCGAG	1 cut(s)	510
SinI	GGWCC	1 cut(s)	285
SlaI	CTCGAG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	510
SmoI	CTYRAG	1 cut(s)	510
Sse9I	AATT	8 cut(s)	278, 350, 530, 591, 786, 804, 1073, 1251
SspI	AATATT	2 cut(s)	324, 1236
SspMI	CTAG	1 cut(s)	693
StyD4I	CCNGG	5 cut(s)	164, 460, 582, 1214, 1277
StyI	CCWWGG	4 cut(s)	750, 908, 924, 934
TaaI	ACNGT	3 cut(s)	448, 640, 797
TaiI	ACGT	5 cut(s)	394, 581, 843, 923, 1261
TaqI	TCGA	4 cut(s)	261, 272, 511, 810
TasI	AATT	8 cut(s)	278, 350, 530, 591, 786, 804, 1073, 1251
TatI	WGTACW	1 cut(s)	858
TauI	GCSGC	5 cut(s)	26, 29, 65, 68, 149
TfiI	GAWTC	2 cut(s)	186, 845
Tru1I	TTAA	2 cut(s)	363, 546
Tru9I	TTAA	2 cut(s)	363, 546
TscAI	CASTG	2 cut(s)	252, 979
TseFI	GTSAC	1 cut(s)	1106
TseI	GCWGC	1 cut(s)	180
Tsp45I	GTSAC	1 cut(s)	1106
TspDTI	ATGAA	6 cut(s)	289, 363, 411, 523, 1032, 1101
TspGWI	ACGGA	1 cut(s)	1212
TspRI	CASTG	2 cut(s)	252, 979
Van91I	CCANNNNNTGG	1 cut(s)	1169
VpaK11BI	GGWCC	1 cut(s)	285
XapI	RAATTY	4 cut(s)	350, 530, 786, 804
XbaI	TCTAGA	1 cut(s)	692
XceI	RCATGY	1 cut(s)	1322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1222
XhoI	CTCGAG	1 cut(s)	510
XmiI	GTMKAC	1 cut(s)	1323
XspI	CTAG	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.