pycom14g12900

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
15935054 .. 15938923
3870 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g12900.8

Sequence Viewer

Length: 1626 bp
ATGGACGTGGCGTCGTCGTCGTCGTCGTCGTCGGCGATAAAAATCGACACAAAACGGCCCCATACGACGGCGACAGGGTTGTTTTCGCCGATAAGCGACGACCTTCTCCACAACATCCTTTCGCGCCTACCCGCCCTATCCTTCGCATCGGCGGCGTGCGTTAGCAAATCCTGGAACCAAATCTGCAGTCGCATCCTCAATCGACCGAAACTCGCCTCCGCCCTCTCTCTCCACCCCTCGCCTAAGGTTGCTGTGAATGAGGTTATCGAGAAGGTTCTGGCCGAACCGATACGGCCTCATTTCGTTGTAGCTAATATTGGAAGTGGGTTTCGATTGTATGACATTTCCAAGCTTATATCGAAAAAATTGGGGTCCAGTGTTCCATTCATCATTTCTACTTCAAGTGGAATTGTTGGAAGAGATGCTCTGACCGATGAAATCAAAGAGGTTATGTGGGGAGAAGTTTGTGGTGATGGAAGTGACGAAGATTGCTCTATACCAGCAAAGGATGTGAACTGTGGCATACTTTTGACTGTTGGCTTTGTGCCGGGATTGAAAGTTGATGTCATCCCGCTGTTACGAACAACAAAGGAACCTCAAGAGGTCTTGCTTGATAAATTCATCACGGATATTATGGATTACACAGCGTCTGTTTCAGATTGCACATCCCCGGTTGGAATTATGATGTTTGGAGATGGGCTTCTTGACATGAAACCGATTGTTGATGCATTGGATTATGCTATGCCTGCAGAAACTGTCATTGTGGGTGATGAAAGAGGTCGTTTTCTATATAGAAGTGAGAACGAGTCTAGAAATGTCTGCGGGAGTGCAAAATACTTTACAGACGCTGTTGCTCTTATATTTGCCCAGGATAAAGGCAAGCCACATGGTATTGGAGACATTCAATTCCAAATTGCATTGTCAAACGGAGTGTCCACGGTAGGTCCCAGGCACAAGGCTGTTTCTGTCAAAGTGAATGAGTGCGAGCATTCTACTTGGCTTACCGCTAGAAGAGAAGGACACCCAGAAATTCTTGATGGTCAACAAATTCTTGACGATATCAATGATGGGTTAGGAAATCATGCTGATTCTTCTGATCTGTACATCGGGGTTACAAAACGTAGAAAAATCTCTATCGGGTCAGAGAAGCCAAGGTGGATTACGTCCTTGGAATACCATGGAGTTGTAGGAGGAGATGATCAGTACCTTTATGTCAGTGGCGTAGGCATAAAAACTGGTGATTACTTCAACTTCTATCGTTCAGACCCTCAAACTGCATTAGCTTCATGTAGCAACATCTCTGCAAGCCTGAAAAAATTGAAGTTAGATGAAAATCCAAAACATCGCCGTCACATGAGTGAAGTATTTGGGGGTTTTATGTTCGCTTGTTGTGGCCGTGGTGAGCCATTCTTTGGACGGACCAATGTTGATGGCTCTCCTTTTGTGGAGAACTTCCCCAGGGTTCCGTTGGCAGGAATATTTTGCGGGGGAGAAATTGCACGTGGCTCTTCAAGGTTGACCGGGGAAGCTCAGAAGGATAGTGATGCTCGTTGCACTCTTCATGTCTACAGCACCATTTATCTTGTGCTGTCATATACTCCAGCACCAGCACCATTGGGGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

542

Amino Acids

58.61

Weight (kDa)

6.08

Isoelectric Point (pI)

40.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1412
AccI GTMKAC 1 cut(s) 1566
AccII CGCG 1 cut(s) 124
AciI CCGC 7 cut(s) 132, 152, 219, 572, 822, 1005, 1485
AcoI YGGCCR 2 cut(s) 279, 1393
AcsI RAATTY 3 cut(s) 617, 1029, 1047
AcvI CACGTG 1 cut(s) 1502
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 2 cut(s) 1103, 1205
AfiI CCNNNNNNNGG 3 cut(s) 67, 1412, 1472
AgsI TTSAA 6 cut(s) 402, 556, 905, 1249, 1321, 1512
AhdI GACNNNNNGTC 1 cut(s) 10
AjiI CACGTC 1 cut(s) 7
AjnI CCWGG 4 cut(s) 170, 867, 947, 1457
AleI CACNNNNGTG 1 cut(s) 1356
AluBI AGCT 4 cut(s) 311, 352, 1283, 1529
AluI AGCT 4 cut(s) 311, 352, 1283, 1529
Alw26I GTCTC 1 cut(s) 891
AlwNI CAGNNNCTG 3 cut(s) 650, 755, 848
AoxI GGCC 4 cut(s) 56, 279, 293, 1393
ApoI RAATTY 3 cut(s) 617, 1029, 1047
ArsI GACNNNNNNTTYG 4 cut(s) 172, 204, 917, 949
AspLEI GCGC 1 cut(s) 126
AspS9I GGNCC 4 cut(s) 57, 372, 944, 1419
AsuC2I CCSGG 3 cut(s) 549, 671, 1522
AsuHPI GGTGA 4 cut(s) 482, 779, 1250, 1412
AvaII GGWCC 3 cut(s) 372, 944, 1419
AxyI CCTNAGG 1 cut(s) 243
BbrPI CACGTG 1 cut(s) 1502
BccI CCATC 5 cut(s) 467, 689, 1031, 1061, 1424
BceAI ACGGC 5 cut(s) 71, 84, 308, 1332, 1380
BciT130I CCWGG 4 cut(s) 172, 869, 949, 1459
BclI TGATCA 1 cut(s) 1198
BcnI CCSGG 3 cut(s) 549, 671, 1522
BcoDI GTCTC 1 cut(s) 891
BfaI CTAG 2 cut(s) 810, 1008
BfmI CTRYAG 3 cut(s) 184, 747, 1567
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 7 cut(s) 172, 549, 671, 869, 949, 1459, 1522
Bme18I GGWCC 3 cut(s) 372, 944, 1419
BmeRI GACNNNNNGTC 1 cut(s) 10
BmgBI CACGTC 1 cut(s) 7
BmgT120I GGNCC 4 cut(s) 57, 372, 944, 1419
BmiI GGNNCC 6 cut(s) 59, 176, 373, 594, 946, 1464
BmrFI CCNGG 7 cut(s) 172, 549, 671, 869, 949, 1459, 1522
BmsI GCATC 5 cut(s) 155, 201, 412, 715, 1534
BpmI CTGGAG 1 cut(s) 1584
BpuEI CTTGAG 1 cut(s) 582
BpuMI CCSGG 3 cut(s) 549, 671, 1522
BsaAI YACGTR 1 cut(s) 1502
BsaBI GATNNNNATC 2 cut(s) 41, 1332
BsaHI GRCGYC 1 cut(s) 11
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 1412, 1472
Bse1I ACTGG 2 cut(s) 375, 1240
Bse21I CCTNAGG 1 cut(s) 243
Bse8I GATNNNNATC 2 cut(s) 41, 1332
BseBI CCWGG 4 cut(s) 172, 869, 949, 1459
BseGI GGATG 5 cut(s) 114, 192, 514, 567, 665
BseJI GATNNNNATC 2 cut(s) 41, 1332
BseLI CCNNNNNNNGG 3 cut(s) 67, 1412, 1472
BseMII CTCAG 1 cut(s) 1544
BseNI ACTGG 2 cut(s) 375, 1240
BseRI GAGGAG 1 cut(s) 1206
Bsh1236I CGCG 1 cut(s) 124
Bsh1285I CGRYCG 1 cut(s) 206
BshFI GGCC 4 cut(s) 58, 281, 295, 1395
BsiEI CGRYCG 1 cut(s) 206
BsiSI CCGG 3 cut(s) 548, 671, 1521
BslFI GGGAC 1 cut(s) 930
BslI CCNNNNNNNGG 3 cut(s) 67, 1412, 1472
BsmAI GTCTC 1 cut(s) 891
BsmFI GGGAC 1 cut(s) 930
BsmI GAATGC 1 cut(s) 988
BsnI GGCC 4 cut(s) 58, 281, 295, 1395
Bsp1407I TGTACA 1 cut(s) 1101
Bsp143I GATC 2 cut(s) 1096, 1198
Bsp19I CCATGG 1 cut(s) 1177
BspACI CCGC 7 cut(s) 132, 152, 219, 572, 822, 1005, 1485
BspANI GGCC 4 cut(s) 58, 281, 295, 1395
BspCNI CTCAG 1 cut(s) 1543
BspFNI CGCG 1 cut(s) 124
BspLI GGNNCC 6 cut(s) 59, 176, 373, 594, 946, 1464
BspMAI CTGCAG 2 cut(s) 188, 751
BspQI GCTCTTC 1 cut(s) 1513
BsrGI TGTACA 1 cut(s) 1101
BsrI ACTGG 2 cut(s) 375, 1240
BssMI GATC 2 cut(s) 1096, 1198
BssNI GRCGYC 1 cut(s) 11
BssT1I CCWWGG 3 cut(s) 1151, 1167, 1177
Bst2UI CCWGG 4 cut(s) 172, 869, 949, 1459
Bst4CI ACNGT 4 cut(s) 518, 535, 757, 940
Bst6I CTCTTC 4 cut(s) 412, 1006, 1513, 1563
BstACI GRCGYC 1 cut(s) 11
BstAUI TGTACA 1 cut(s) 1101
BstBAI YACGTR 1 cut(s) 1502
BstC8I GCNNGC 5 cut(s) 157, 747, 881, 986, 1306
BstDEI CTNAG 2 cut(s) 243, 1530
BstDSI CCRYGG 3 cut(s) 936, 1177, 1396
BstF5I GGATG 5 cut(s) 114, 192, 514, 567, 665
BstFNI CGCG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 2 cut(s) 1099, 1201
BstMAI GTCTC 1 cut(s) 891
BstMBI GATC 2 cut(s) 1096, 1198
BstMCI CGRYCG 1 cut(s) 206
BstMWI GCNNNNNNNGC 2 cut(s) 152, 746
BstNI CCWGG 4 cut(s) 172, 869, 949, 1459
BstSCI CCNGG 7 cut(s) 170, 547, 669, 867, 947, 1457, 1520
BstSFI CTRYAG 3 cut(s) 184, 747, 1567
BstUI CGCG 1 cut(s) 124
Bsu36I CCTNAGG 1 cut(s) 243
BsuRI GGCC 4 cut(s) 58, 281, 295, 1395
BtgI CCRYGG 3 cut(s) 936, 1177, 1396
BtgZI GCGATG 1 cut(s) 1328
BtrI CACGTC 1 cut(s) 7
BtsCI GGATG 5 cut(s) 114, 192, 514, 567, 665
BtsIMutI CAGTG 2 cut(s) 382, 1222
Cac8I GCNNGC 5 cut(s) 157, 747, 881, 986, 1306
CaiI CAGNNNCTG 3 cut(s) 650, 755, 848
CfoI GCGC 1 cut(s) 126
Cfr13I GGNCC 4 cut(s) 57, 372, 944, 1419
CseI GACGC 2 cut(s) 636, 854
Csp6I GTAC 2 cut(s) 1102, 1204
CviAII CATG 7 cut(s) 709, 887, 1082, 1178, 1287, 1354, 1562
CviQI GTAC 2 cut(s) 1102, 1204
DdeI CTNAG 2 cut(s) 243, 1530
DpnI GATC 2 cut(s) 1098, 1200
DpnII GATC 2 cut(s) 1096, 1198
DriI GACNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 2 cut(s) 279, 1393
Eam1104I CTCTTC 4 cut(s) 412, 1006, 1513, 1563
Eam1105I GACNNNNNGTC 1 cut(s) 10
EarI CTCTTC 4 cut(s) 412, 1006, 1513, 1563
EciI GGCGGA 1 cut(s) 208
Eco130I CCWWGG 3 cut(s) 1151, 1167, 1177
Eco32I GATATC 1 cut(s) 1060
Eco47I GGWCC 3 cut(s) 372, 944, 1419
Eco72I CACGTG 1 cut(s) 1502
Eco81I CCTNAGG 1 cut(s) 243
EcoO109I RGGNCCY 1 cut(s) 944
EcoRII CCWGG 4 cut(s) 170, 867, 947, 1457
EcoRV GATATC 1 cut(s) 1060
EcoT14I CCWWGG 3 cut(s) 1151, 1167, 1177
EcoT22I ATGCAT 1 cut(s) 730
ErhI CCWWGG 3 cut(s) 1151, 1167, 1177
FaeI CATG 7 cut(s) 712, 890, 1085, 1181, 1290, 1357, 1565
FaqI GGGAC 1 cut(s) 930
FatI CATG 7 cut(s) 708, 886, 1081, 1177, 1286, 1353, 1561
FauI CCCGC 4 cut(s) 139, 579, 815, 1478
FbaI TGATCA 1 cut(s) 1198
FblI GTMKAC 1 cut(s) 1566
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 5 cut(s) 101, 179, 521, 554, 652
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 2 cut(s) 810, 1008
GlaI GCGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 1584
HaeIII GGCC 4 cut(s) 58, 281, 295, 1395
HapII CCGG 3 cut(s) 548, 671, 1521
HgaI GACGC 2 cut(s) 636, 854
HhaI GCGC 1 cut(s) 126
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 7 cut(s) 712, 890, 1085, 1181, 1290, 1357, 1565
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HincII GTYRAC 2 cut(s) 1043, 1518
HindII GTYRAC 2 cut(s) 1043, 1518
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 2 cut(s) 806, 1088
HpaII CCGG 3 cut(s) 548, 671, 1521
HphI GGTGA 4 cut(s) 482, 779, 1250, 1412
Hpy166II GTNNAC 5 cut(s) 514, 936, 1043, 1518, 1567
Hpy188I TCNGA 6 cut(s) 429, 658, 1096, 1144, 1264, 1533
Hpy188III TCNNGA 6 cut(s) 268, 599, 704, 810, 1034, 1052
Hpy8I GTNNAC 5 cut(s) 514, 936, 1043, 1518, 1567
Hpy99I CGWCG 9 cut(s) 16, 19, 22, 25, 28, 31, 34, 70, 101
HpyAV CCTTC 5 cut(s) 113, 151, 265, 1010, 1528
HpyCH4III ACNGT 4 cut(s) 518, 535, 757, 940
HpyCH4IV ACGT 4 cut(s) 6, 1120, 1163, 1501
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 746
HpyF3I CTNAG 2 cut(s) 243, 1530
HpySE526I ACGT 4 cut(s) 6, 1120, 1163, 1501
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 7 cut(s) 712, 890, 1085, 1181, 1290, 1357, 1565
HspAI GCGC 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 1198
Kzo9I GATC 2 cut(s) 1096, 1198
LguI GCTCTTC 1 cut(s) 1513
LweI GCATC 5 cut(s) 155, 201, 412, 715, 1534
MaeI CTAG 2 cut(s) 810, 1008
MaeII ACGT 4 cut(s) 6, 1120, 1163, 1501
MaeIII GTNAC 4 cut(s) 479, 576, 1111, 1349
MalI GATC 2 cut(s) 1098, 1200
MboI GATC 2 cut(s) 1096, 1198
MboII GAAGA 6 cut(s) 429, 497, 1023, 1083, 1500, 1550
MlyI GAGTC 1 cut(s) 815
MmeI TCCRAC 2 cut(s) 394, 655
Mph1103I ATGCAT 1 cut(s) 730
MslI CAYNNNNRTG 1 cut(s) 1356
MspA1I CMGCKG 1 cut(s) 574
MspI CCGG 3 cut(s) 548, 671, 1521
MspR9I CCNGG 7 cut(s) 172, 549, 671, 869, 949, 1459, 1522
Mva1269I GAATGC 1 cut(s) 988
MvaI CCWGG 4 cut(s) 172, 869, 949, 1459
MvnI CGCG 1 cut(s) 124
MwoI GCNNNNNNNGC 2 cut(s) 152, 746
NciI CCSGG 3 cut(s) 549, 671, 1522
NcoI CCATGG 1 cut(s) 1177
NdeII GATC 2 cut(s) 1096, 1198
NlaIII CATG 7 cut(s) 712, 890, 1085, 1181, 1290, 1357, 1565
NlaIV GGNNCC 6 cut(s) 59, 176, 373, 594, 946, 1464
NmuCI GTSAC 2 cut(s) 479, 1349
NsiI ATGCAT 1 cut(s) 730
OliI CACNNNNGTG 1 cut(s) 1356
PasI CCCWGGG 1 cut(s) 1458
PciSI GCTCTTC 1 cut(s) 1513
PcsI WCGNNNNNNNCGW 4 cut(s) 20, 23, 26, 32
PctI GAATGC 1 cut(s) 988
PfeI GAWTC 1 cut(s) 1088
PflMI CCANNNNNTGG 1 cut(s) 1412
PfoI TCCNGGA 1 cut(s) 170
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 814
PmaCI CACGTG 1 cut(s) 1502
PmlI CACGTG 1 cut(s) 1502
PpsI GAGTC 1 cut(s) 814
Ppu21I YACGTR 1 cut(s) 1502
PpuMI RGGWCCY 1 cut(s) 944
Psp5II RGGWCCY 1 cut(s) 944
Psp6I CCWGG 4 cut(s) 170, 867, 947, 1457
PspCI CACGTG 1 cut(s) 1502
PspGI CCWGG 4 cut(s) 170, 867, 947, 1457
PspN4I GGNNCC 6 cut(s) 59, 176, 373, 594, 946, 1464
PspPI GGNCC 4 cut(s) 57, 372, 944, 1419
PspPPI RGGWCCY 1 cut(s) 944
PstI CTGCAG 2 cut(s) 188, 751
PstNI CAGNNNCTG 3 cut(s) 650, 755, 848
RsaI GTAC 2 cut(s) 1103, 1205
RsaNI GTAC 2 cut(s) 1102, 1204
RseI CAYNNNNRTG 1 cut(s) 1356
SapI GCTCTTC 1 cut(s) 1513
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 1096, 1198
Sau96I GGNCC 4 cut(s) 57, 372, 944, 1419
SchI GAGTC 1 cut(s) 815
ScrFI CCNGG 7 cut(s) 172, 549, 671, 869, 949, 1459, 1522
SfaNI GCATC 5 cut(s) 155, 201, 412, 715, 1534
SfcI CTRYAG 3 cut(s) 184, 747, 1567
SinI GGWCC 3 cut(s) 372, 944, 1419
SmiMI CAYNNNNRTG 1 cut(s) 1356
SmlI CTYRAG 1 cut(s) 597
SmoI CTYRAG 1 cut(s) 597
SsiI CCGC 7 cut(s) 132, 152, 219, 572, 822, 1005, 1485
SspI AATATT 2 cut(s) 316, 1479
SspMI CTAG 2 cut(s) 810, 1008
StyD4I CCNGG 7 cut(s) 170, 547, 669, 867, 947, 1457, 1520
StyI CCWWGG 3 cut(s) 1151, 1167, 1177
TaaI ACNGT 4 cut(s) 518, 535, 757, 940
TaiI ACGT 4 cut(s) 9, 1123, 1166, 1504
TaqI TCGA 5 cut(s) 45, 202, 267, 331, 359
TaqII GACCGA 2 cut(s) 220, 446
TatI WGTACW 1 cut(s) 1101
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 1088
TscAI CASTG 2 cut(s) 382, 1222
TseFI GTSAC 2 cut(s) 479, 1349
Tsp45I GTSAC 2 cut(s) 479, 1349
TspDTI ATGAA 8 cut(s) 376, 450, 610, 725, 786, 1275, 1344, 1550
TspGWI ACGGA 4 cut(s) 641, 942, 1432, 1455
TspRI CASTG 2 cut(s) 382, 1222
Van91I CCANNNNNTGG 1 cut(s) 1412
VpaK11BI GGWCC 3 cut(s) 372, 944, 1419
XapI RAATTY 3 cut(s) 617, 1029, 1047
XbaI TCTAGA 1 cut(s) 809
XcmI CCANNNNNNNNNTGG 1 cut(s) 1465
XmiI GTMKAC 1 cut(s) 1566
XspI CTAG 2 cut(s) 810, 1008
Zsp2I ATGCAT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.