MD14G1155200.v1.1

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
24951841 .. 24956133
4293 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1155200.v1.1.491

Sequence Viewer

Length: 1623 bp
ATGGACGTGGCATCGTCGTCGTCGGCGATAAAAACCGACACAAAACGGCCCCATACGACGGCGACAGGGTTGTTTTCGCCGATAAGCGATGACCTTCTCCACAACGTCCTTTCGCGCCTACCCGCCCTAACCTTCGCATCGGCGGCGTGCGTTAGCAAATCCTGGAACCAAATCTGCAGTCGCATCCTCAATCGACCGAAACTCGCCTCCGCCCTCTCTCTCCACCCCTCGCCTAAGGTTGCTGTGAATGAGGTTATCGAGAAGGTTCTGGCCGAACCGATACGGCCTCATTTCGTTGTAGCTAATATTGGAAGTGGGTTTCGATTGTATGACATTTCCAAGCTTATATCGAAAAAATTGGGGTCCAGTGTTCCATTCATCATTTCTACTTCAAGTGGAATTGTTGGAAGAGATGCTCTGACCCATGAAATCAAAGAGGTTAAGTGGGGAGAAGTTTGTGGTGATGGAAGTGATGAAGATTGCTCTATACCAGCAAAGGATGTGAACTGTGGCATCCTTTTGACTGTTGGCTTTGTGCCAGGATTGAAAGTTGATGTCATCCCGCTGTTACGAACAACAAAGGAACCTCGAGAGGTGTTGCTTGATAAATTCATCACGGATATTATGGATTACACAGCGTCTGTTTCAGATTGCACATCCCCAGTTGGAATTATGATGTTTGGAGATGGGCTTCTTGACATGAAACCGATTGTTGATGCATTGGATTATACTATGCCTGCAGAAACTGTCATTGTGGGTGATGAAAGAGGTCGTTTTCTATATAGAAGTGAGAACGAGTCTAGAAATGTCTGCGGGAGTGCAAAATACTTTACAGACGCTGTTGCTCTTATATTTGCAAAGGATAAAGGCAAGCCACATGGTATTGGAGACATTCAATTCCAAATTGCATTGTCAAACGGAGTGTCCACAGTAGGTCCCCGGCACAAGGCTGTTTCTGTCAAAGTGAATGAGTGTGAGCGTTCTACTTGGCTTACTGCTAGAAGAGAAGGACACCCTGAAATTCTTGATGGTCAACAAATCCTTGATGATATCAATGATGAGTTAGGAAATCATGCTGATTCTTCTGATCTGTACATCGGGGTTACAAAACGTAGAAAAATCTCTATCGGGTCAGAGAAGCCAAGGTGGATTACGTCCTTGGAATACCATGGAGTTGTAGGAGGAGATGATCAGTACCTTTATGTCAGTGGCGTTGGCATAAAAACTGGTGATTACTTCAACTTCTATCGTTCAGACCCCCAAACTGCATTAGCTTCATGTAGCAACATCTCTGCCAACCTGAAAAAATTGAAGTTAGAAGAAAATCCAAAACATCGCCGTCACATGAGTGAAGTATTTGGGGGTTTTATGTTCGCTTGTTGTGGCCGTGGTGAGCCGTTCTTTGGACGGACCAATGTTGATGGCTCTCCTTTTGTGGAGAACTTCCCCAGGGTTCCATTGGCAGGAATATTTTGCGGGGGAGAAATTGCACGTGGCTCTTCGAGGTTGACCGGGGAAGCTCAGAAGGATAATGATGCTCGTTGCACTCTTCATGTCTACAGCACCATTTATCTTGTGCTGTCATATACTCCAGCACCAGCACCAGCACCATTGGAGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

541

Amino Acids

58.82

Weight (kDa)

6.41

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 28 - 61 2.3e-07 F-box domain
FIST_C PF10442 397 - 498 6.8e-08 FIST C domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1557
AccII CGCG 1 cut(s) 115
AciI CCGC 6 cut(s) 123, 143, 210, 563, 813, 1476
AcoI YGGCCR 2 cut(s) 270, 1384
AcsI RAATTY 2 cut(s) 608, 1020
AcvI CACGTG 1 cut(s) 1493
AfaI GTAC 2 cut(s) 1094, 1196
AfiI CCNNNNNNNGG 4 cut(s) 58, 946, 1403, 1463
AgsI TTSAA 5 cut(s) 393, 547, 896, 1240, 1312
AjiI CACGTC 1 cut(s) 7
AjnI CCWGG 3 cut(s) 161, 538, 1448
AleI CACNNNNGTG 1 cut(s) 1347
AluBI AGCT 4 cut(s) 302, 343, 1274, 1520
AluI AGCT 4 cut(s) 302, 343, 1274, 1520
Alw26I GTCTC 1 cut(s) 882
AlwNI CAGNNNCTG 3 cut(s) 641, 746, 839
Ama87I CYCGRG 1 cut(s) 588
AoxI GGCC 4 cut(s) 47, 270, 284, 1384
ApoI RAATTY 2 cut(s) 608, 1020
ArsI GACNNNNNNTTYG 4 cut(s) 163, 195, 908, 940
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 4 cut(s) 48, 363, 935, 1410
AsuC2I CCSGG 2 cut(s) 940, 1513
AsuHPI GGTGA 4 cut(s) 473, 770, 1241, 1403
AvaI CYCGRG 1 cut(s) 588
AvaII GGWCC 3 cut(s) 363, 935, 1410
AxyI CCTNAGG 1 cut(s) 234
BbrPI CACGTG 1 cut(s) 1493
BccI CCATC 4 cut(s) 458, 680, 1022, 1415
BceAI ACGGC 6 cut(s) 62, 75, 299, 1323, 1371, 1381
BcgI CGANNNNNNTGC 1 cut(s) 34
BciT130I CCWGG 3 cut(s) 163, 540, 1450
BclI TGATCA 1 cut(s) 1189
BcnI CCSGG 2 cut(s) 940, 1513
BcoDI GTCTC 1 cut(s) 882
BfaI CTAG 2 cut(s) 801, 999
BfmI CTRYAG 3 cut(s) 175, 738, 1558
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 5 cut(s) 163, 540, 940, 1450, 1513
Bme18I GGWCC 3 cut(s) 363, 935, 1410
BmeT110I CYCGRG 1 cut(s) 588
BmgBI CACGTC 1 cut(s) 7
BmgT120I GGNCC 4 cut(s) 48, 363, 935, 1410
BmiI GGNNCC 6 cut(s) 50, 167, 364, 585, 937, 1455
BmrFI CCNGG 5 cut(s) 163, 540, 940, 1450, 1513
BmrI ACTGGG 1 cut(s) 656
BmsI GCATC 7 cut(s) 20, 146, 192, 403, 522, 706, 1525
BmuI ACTGGG 1 cut(s) 656
BpmI CTGGAG 1 cut(s) 1575
BpuMI CCSGG 2 cut(s) 940, 1513
BsaAI YACGTR 1 cut(s) 1493
BsaJI CCNNGG 8 cut(s) 938, 1142, 1158, 1168, 1387, 1448, 1449, 1512
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 946, 1403, 1463
Bse1I ACTGG 3 cut(s) 366, 662, 1231
Bse21I CCTNAGG 1 cut(s) 234
BseBI CCWGG 3 cut(s) 163, 540, 1450
BseDI CCNNGG 8 cut(s) 938, 1142, 1158, 1168, 1387, 1448, 1449, 1512
BseGI GGATG 5 cut(s) 183, 505, 513, 558, 656
BseLI CCNNNNNNNGG 4 cut(s) 58, 946, 1403, 1463
BseMII CTCAG 1 cut(s) 1535
BseNI ACTGG 3 cut(s) 366, 662, 1231
BseRI GAGGAG 1 cut(s) 1197
Bsh1236I CGCG 1 cut(s) 115
Bsh1285I CGRYCG 1 cut(s) 197
BshFI GGCC 4 cut(s) 49, 272, 286, 1386
BsiEI CGRYCG 1 cut(s) 197
BsiHKCI CYCGRG 1 cut(s) 588
BsiSI CCGG 2 cut(s) 940, 1512
BslFI GGGAC 1 cut(s) 921
BslI CCNNNNNNNGG 4 cut(s) 58, 946, 1403, 1463
BsmAI GTCTC 1 cut(s) 882
BsmFI GGGAC 1 cut(s) 921
BsnI GGCC 4 cut(s) 49, 272, 286, 1386
BsoBI CYCGRG 1 cut(s) 588
Bsp1407I TGTACA 1 cut(s) 1092
Bsp143I GATC 2 cut(s) 1087, 1189
Bsp19I CCATGG 1 cut(s) 1168
BspACI CCGC 6 cut(s) 123, 143, 210, 563, 813, 1476
BspANI GGCC 4 cut(s) 49, 272, 286, 1386
BspCNI CTCAG 1 cut(s) 1534
BspFNI CGCG 1 cut(s) 115
BspLI GGNNCC 6 cut(s) 50, 167, 364, 585, 937, 1455
BspMAI CTGCAG 2 cut(s) 179, 742
BspQI GCTCTTC 1 cut(s) 1504
BsrGI TGTACA 1 cut(s) 1092
BsrI ACTGG 3 cut(s) 366, 662, 1231
BssECI CCNNGG 8 cut(s) 938, 1142, 1158, 1168, 1387, 1448, 1449, 1512
BssMI GATC 2 cut(s) 1087, 1189
BssT1I CCWWGG 3 cut(s) 1142, 1158, 1168
Bst2UI CCWGG 3 cut(s) 163, 540, 1450
Bst4CI ACNGT 4 cut(s) 509, 526, 748, 931
Bst6I CTCTTC 4 cut(s) 403, 997, 1504, 1554
BstAUI TGTACA 1 cut(s) 1092
BstBAI YACGTR 1 cut(s) 1493
BstC8I GCNNGC 3 cut(s) 148, 738, 872
BstDEI CTNAG 2 cut(s) 234, 1521
BstDSI CCRYGG 2 cut(s) 1168, 1387
BstF5I GGATG 5 cut(s) 183, 505, 513, 558, 656
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 2 cut(s) 1090, 1192
BstMAI GTCTC 1 cut(s) 882
BstMBI GATC 2 cut(s) 1087, 1189
BstMCI CGRYCG 1 cut(s) 197
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 3 cut(s) 163, 540, 1450
BstSCI CCNGG 5 cut(s) 161, 538, 938, 1448, 1511
BstSFI CTRYAG 3 cut(s) 175, 738, 1558
BstUI CGCG 1 cut(s) 115
Bsu36I CCTNAGG 1 cut(s) 234
BsuRI GGCC 4 cut(s) 49, 272, 286, 1386
BtgI CCRYGG 2 cut(s) 1168, 1387
BtgZI GCGATG 2 cut(s) 102, 1319
BtrI CACGTC 1 cut(s) 7
BtsCI GGATG 5 cut(s) 183, 505, 513, 558, 656
BtsIMutI CAGTG 2 cut(s) 373, 1213
Cac8I GCNNGC 3 cut(s) 148, 738, 872
CaiI CAGNNNCTG 3 cut(s) 641, 746, 839
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 4 cut(s) 48, 363, 935, 1410
CseI GACGC 2 cut(s) 627, 845
Csp6I GTAC 2 cut(s) 1093, 1195
CviAII CATG 8 cut(s) 425, 700, 878, 1073, 1169, 1278, 1345, 1553
CviQI GTAC 2 cut(s) 1093, 1195
DdeI CTNAG 2 cut(s) 234, 1521
DpnI GATC 2 cut(s) 1089, 1191
DpnII GATC 2 cut(s) 1087, 1189
EaeI YGGCCR 2 cut(s) 270, 1384
Eam1104I CTCTTC 4 cut(s) 403, 997, 1504, 1554
EarI CTCTTC 4 cut(s) 403, 997, 1504, 1554
EciI GGCGGA 1 cut(s) 199
Eco130I CCWWGG 3 cut(s) 1142, 1158, 1168
Eco32I GATATC 1 cut(s) 1051
Eco47I GGWCC 3 cut(s) 363, 935, 1410
Eco72I CACGTG 1 cut(s) 1493
Eco81I CCTNAGG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 588
EcoO109I RGGNCCY 1 cut(s) 935
EcoRII CCWGG 3 cut(s) 161, 538, 1448
EcoRV GATATC 1 cut(s) 1051
EcoT14I CCWWGG 3 cut(s) 1142, 1158, 1168
EcoT22I ATGCAT 1 cut(s) 721
ErhI CCWWGG 3 cut(s) 1142, 1158, 1168
FaeI CATG 8 cut(s) 428, 703, 881, 1076, 1172, 1281, 1348, 1556
FaqI GGGAC 1 cut(s) 921
FatI CATG 8 cut(s) 424, 699, 877, 1072, 1168, 1277, 1344, 1552
FauI CCCGC 4 cut(s) 130, 570, 806, 1469
FbaI TGATCA 1 cut(s) 1189
FblI GTMKAC 1 cut(s) 1557
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 5 cut(s) 170, 500, 512, 545, 643
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 2 cut(s) 801, 999
GlaI GCGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 1575
HaeIII GGCC 4 cut(s) 49, 272, 286, 1386
HapII CCGG 2 cut(s) 940, 1512
HgaI GACGC 2 cut(s) 627, 845
HhaI GCGC 1 cut(s) 117
Hin1II CATG 8 cut(s) 428, 703, 881, 1076, 1172, 1281, 1348, 1556
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HincII GTYRAC 2 cut(s) 1034, 1509
HindII GTYRAC 2 cut(s) 1034, 1509
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 2 cut(s) 797, 1079
HpaII CCGG 2 cut(s) 940, 1512
HphI GGTGA 4 cut(s) 473, 770, 1241, 1403
Hpy166II GTNNAC 5 cut(s) 505, 927, 1034, 1509, 1558
Hpy188I TCNGA 6 cut(s) 420, 649, 1087, 1135, 1255, 1524
Hpy188III TCNNGA 5 cut(s) 259, 590, 695, 801, 1025
Hpy8I GTNNAC 5 cut(s) 505, 927, 1034, 1509, 1558
Hpy99I CGWCG 4 cut(s) 19, 22, 25, 61
HpyAV CCTTC 5 cut(s) 104, 142, 256, 1001, 1519
HpyCH4III ACNGT 4 cut(s) 509, 526, 748, 931
HpyCH4IV ACGT 5 cut(s) 6, 105, 1111, 1154, 1492
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 2 cut(s) 234, 1521
HpySE526I ACGT 5 cut(s) 6, 105, 1111, 1154, 1492
Hsp92II CATG 8 cut(s) 428, 703, 881, 1076, 1172, 1281, 1348, 1556
HspAI GCGC 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 1189
Kzo9I GATC 2 cut(s) 1087, 1189
LguI GCTCTTC 1 cut(s) 1504
LmnI GCTCC 1 cut(s) 1615
LweI GCATC 7 cut(s) 20, 146, 192, 403, 522, 706, 1525
MaeI CTAG 2 cut(s) 801, 999
MaeII ACGT 5 cut(s) 6, 105, 1111, 1154, 1492
MaeIII GTNAC 3 cut(s) 567, 1102, 1340
MalI GATC 2 cut(s) 1089, 1191
MboI GATC 2 cut(s) 1087, 1189
MboII GAAGA 7 cut(s) 420, 488, 1014, 1074, 1331, 1491, 1541
MluCI AATT 9 cut(s) 356, 399, 608, 669, 896, 903, 1020, 1307, 1485
MlyI GAGTC 1 cut(s) 806
MmeI TCCRAC 2 cut(s) 385, 646
Mph1103I ATGCAT 1 cut(s) 721
MseI TTAA 1 cut(s) 441
MslI CAYNNNNRTG 1 cut(s) 1347
MspA1I CMGCKG 1 cut(s) 565
MspI CCGG 2 cut(s) 940, 1512
MspR9I CCNGG 5 cut(s) 163, 540, 940, 1450, 1513
MvaI CCWGG 3 cut(s) 163, 540, 1450
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 143
NciI CCSGG 2 cut(s) 940, 1513
NcoI CCATGG 1 cut(s) 1168
NdeII GATC 2 cut(s) 1087, 1189
NlaIII CATG 8 cut(s) 428, 703, 881, 1076, 1172, 1281, 1348, 1556
NlaIV GGNNCC 6 cut(s) 50, 167, 364, 585, 937, 1455
NmuCI GTSAC 1 cut(s) 1340
NsiI ATGCAT 1 cut(s) 721
OliI CACNNNNGTG 1 cut(s) 1347
PaeR7I CTCGAG 1 cut(s) 588
PasI CCCWGGG 1 cut(s) 1449
PciSI GCTCTTC 1 cut(s) 1504
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PfeI GAWTC 1 cut(s) 1079
PfoI TCCNGGA 1 cut(s) 161
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 1 cut(s) 805
PmaCI CACGTG 1 cut(s) 1493
PmlI CACGTG 1 cut(s) 1493
PpsI GAGTC 1 cut(s) 805
Ppu21I YACGTR 1 cut(s) 1493
PpuMI RGGWCCY 1 cut(s) 935
Psp5II RGGWCCY 1 cut(s) 935
Psp6I CCWGG 3 cut(s) 161, 538, 1448
PspCI CACGTG 1 cut(s) 1493
PspGI CCWGG 3 cut(s) 161, 538, 1448
PspN4I GGNNCC 6 cut(s) 50, 167, 364, 585, 937, 1455
PspPI GGNCC 4 cut(s) 48, 363, 935, 1410
PspPPI RGGWCCY 1 cut(s) 935
PstI CTGCAG 2 cut(s) 179, 742
PstNI CAGNNNCTG 3 cut(s) 641, 746, 839
RsaI GTAC 2 cut(s) 1094, 1196
RsaNI GTAC 2 cut(s) 1093, 1195
RseI CAYNNNNRTG 1 cut(s) 1347
SapI GCTCTTC 1 cut(s) 1504
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 2 cut(s) 1087, 1189
Sau96I GGNCC 4 cut(s) 48, 363, 935, 1410
SchI GAGTC 1 cut(s) 806
ScrFI CCNGG 5 cut(s) 163, 540, 940, 1450, 1513
SfaNI GCATC 7 cut(s) 20, 146, 192, 403, 522, 706, 1525
SfcI CTRYAG 3 cut(s) 175, 738, 1558
Sfr274I CTCGAG 1 cut(s) 588
SinI GGWCC 3 cut(s) 363, 935, 1410
SlaI CTCGAG 1 cut(s) 588
SmiMI CAYNNNNRTG 1 cut(s) 1347
SmlI CTYRAG 1 cut(s) 588
SmoI CTYRAG 1 cut(s) 588
Sse9I AATT 9 cut(s) 356, 399, 608, 669, 896, 903, 1020, 1307, 1485
SsiI CCGC 6 cut(s) 123, 143, 210, 563, 813, 1476
SspI AATATT 2 cut(s) 307, 1470
SspMI CTAG 2 cut(s) 801, 999
StyD4I CCNGG 5 cut(s) 161, 538, 938, 1448, 1511
StyI CCWWGG 3 cut(s) 1142, 1158, 1168
TaaI ACNGT 4 cut(s) 509, 526, 748, 931
TaiI ACGT 5 cut(s) 9, 108, 1114, 1157, 1495
TaqI TCGA 6 cut(s) 193, 258, 322, 350, 589, 1502
TaqII GACCGA 1 cut(s) 211
TasI AATT 9 cut(s) 356, 399, 608, 669, 896, 903, 1020, 1307, 1485
TatI WGTACW 1 cut(s) 1092
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 1079
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 2 cut(s) 373, 1213
TseFI GTSAC 1 cut(s) 1340
Tsp45I GTSAC 1 cut(s) 1340
TspDTI ATGAA 8 cut(s) 367, 441, 489, 601, 716, 777, 1266, 1541
TspGWI ACGGA 3 cut(s) 632, 933, 1423
TspRI CASTG 2 cut(s) 373, 1213
VpaK11BI GGWCC 3 cut(s) 363, 935, 1410
XapI RAATTY 2 cut(s) 608, 1020
XbaI TCTAGA 1 cut(s) 800
XcmI CCANNNNNNNNNTGG 1 cut(s) 1456
XhoI CTCGAG 1 cut(s) 588
XmiI GTMKAC 1 cut(s) 1557
XspI CTAG 2 cut(s) 801, 999
Zsp2I ATGCAT 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.