Rh7AG105500

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0008756
Physical Location & Seq
Forward (+)
8368168 .. 8372604
4437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG105500.1

Sequence Viewer

Length: 1185 bp
ATGGACGAGGCCTCATCGTCGACTCCCAGGAGCGACGCAAAGCAGCTGAAAACGACGACGGCCGGAGGGTTGTTCTCACTGTTAAACGACGACCTCCTCCACAACATCCTCGCCCGCCTTCCGGCCCCCTCCTTCGCCTCAGCCGCGTGCGTCAGCAAATCCTGGAGCCGAACATGCACTCTCATCCTCTCTCGCCCCAAACTCGCCTCCGCCCTCTCTCTCAATCCCAGCCTCCAGGTTGCTTGGGAAGAGGTCACAGAGAAGGTTCTGGCCGATCCGATCAGGCCGCATTTCATCATAGCTAATCTCGGAAGTGGGTTTCGCTTGGTTGATGTTCACAAGCTTATAAAGGAGAGATTTGGGTCCAGAGCTCCGTTTGTTGTTTCTACCGCGAATGGGATTCTTGGAAGAGATGTTGGTACCTGTGAAATCAAAGAGGTACAGTGGGACAGTGTTTCTAGTGATGTGAGTGATGATGATGGCTCCGTACCTGCAGAGGATGGGAGCTACGGCATTGTTTTGACTGTCGGCTTTGTGCCGGGTTTGAAAGTTGATGCTATCCCGCTGTTATCGACTAGTGTAAAGGAATGTCAAGAGGTCTTTATCGATAAGTTTGTCATGGATATTAAGGATTACACAGCCTCTGTTTCAGATTGCACAGCCCCAGTAGGGATTATAATGTTTGGAGATGGGTATACTAATATGAGACCAGTTGTTGATGCATTGGATTATGCTATGCCCGAGGAAACTGTCATCGTGGGTGATGAGAAGGGTCGGTTTTTGTATAGAAGTGAGAATGAGTCTAGAAATGTCTGTGGGACTGCAACATCCTTTTCAGTTGCTGTTGCTCTTATATTTGCCAGGGACAAAGAAAACTCCTGTGGTATAGGGGATATTCAATTCCAAATTGCATTGTCAGAAGGTGTGTCAACAGTAGGTCCCAAACACAAGGCTGTCTCTGTTAGAGCTAGCGCCTCTGATTCTACTTGGCTCACTGCTAGAAGAGAAGGACACCGCGAGATTCTTGATGGTCAACGAATTCTGAATGATATTAACGATGAGTTAGAAAATCACACGGATTCGTCTGATCTGTACATTGGGGTTAAAAAACGAAGAAGTATCTCCACAGGGCCAAAGACGCGTAGGCTAGTTACTTCCCTGGACTTCCATGGAGTTATAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FIST FIST_C

Protein Analysis

394

Amino Acids

42.62

Weight (kDa)

5.3

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 25 - 60 1.8e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 347, 677
Acc36I ACCTGC 1 cut(s) 499
Acc65I GGTACC 1 cut(s) 419
AccB1I GGYRCC 1 cut(s) 419
AccI GTMKAC 2 cut(s) 20, 695
AccII CGCG 4 cut(s) 146, 392, 1017, 1141
AciI CCGC 7 cut(s) 115, 144, 210, 287, 390, 563, 1015
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 2 cut(s) 60, 270
AcsI RAATTY 1 cut(s) 1038
AfaI GTAC 4 cut(s) 421, 441, 489, 1094
AfiI CCNNNNNNNGG 3 cut(s) 121, 396, 669
AflIII ACRYGT 1 cut(s) 1139
AgsI TTSAA 2 cut(s) 547, 899
AhlI ACTAGT 1 cut(s) 575
AjnI CCWGG 5 cut(s) 26, 161, 234, 860, 1158
AluBI AGCT 6 cut(s) 46, 302, 343, 371, 507, 968
AluI AGCT 6 cut(s) 46, 302, 343, 371, 507, 968
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 2 cut(s) 700, 961
AlwI GGATC 1 cut(s) 269
AlwNI CAGNNNCTG 2 cut(s) 644, 842
Ama87I CYCGRG 1 cut(s) 740
AoxI GGCC 6 cut(s) 9, 60, 123, 270, 284, 1130
ApeKI GCWGC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 1038
Asp718I GGTACC 1 cut(s) 419
AspLEI GCGC 1 cut(s) 974
AspS9I GGNCC 4 cut(s) 124, 363, 938, 1130
AsuC2I CCSGG 1 cut(s) 540
AsuHPI GGTGA 1 cut(s) 773
AsuNHI GCTAGC 1 cut(s) 968
AvaI CYCGRG 1 cut(s) 740
AvaII GGWCC 2 cut(s) 363, 938
BanI GGYRCC 1 cut(s) 419
BanII GRGCYC 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 373
BbvCI CCTCAGC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 55
BccI CCATC 4 cut(s) 473, 494, 683, 1022
BceAI ACGGC 2 cut(s) 75, 526
BciT130I CCWGG 5 cut(s) 28, 163, 236, 862, 1160
BcnI CCSGG 1 cut(s) 540
BcoDI GTCTC 2 cut(s) 700, 961
BcuI ACTAGT 1 cut(s) 575
BfaI CTAG 6 cut(s) 459, 576, 804, 969, 999, 1148
BfmI CTRYAG 1 cut(s) 492
BfoI RGCGCY 1 cut(s) 975
BfuAI ACCTGC 1 cut(s) 499
BisI GCNGC 3 cut(s) 44, 144, 287
BlsI GCNGC 3 cut(s) 45, 145, 288
Bme1390I CCNGG 6 cut(s) 28, 163, 236, 540, 862, 1160
Bme18I GGWCC 2 cut(s) 363, 938
BmeT110I CYCGRG 1 cut(s) 740
BmgT120I GGNCC 4 cut(s) 124, 363, 938, 1130
BmiI GGNNCC 6 cut(s) 126, 167, 364, 421, 484, 940
BmrFI CCNGG 6 cut(s) 28, 163, 236, 540, 862, 1160
BmrI ACTGGG 1 cut(s) 659
BmsI GCATC 2 cut(s) 544, 709
BmtI GCTAGC 1 cut(s) 972
BmuI ACTGGG 1 cut(s) 659
BpmI CTGGAG 2 cut(s) 184, 218
Bpu10I CCTNAGC 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 540
Bsa29I ATCGAT 1 cut(s) 606
BsaI GGTCTC 1 cut(s) 700
BsaJI CCNNGG 5 cut(s) 26, 741, 861, 1158, 1168
Bsc4I CCNNNNNNNGG 3 cut(s) 121, 396, 669
Bse1I ACTGG 2 cut(s) 665, 710
BseBI CCWGG 5 cut(s) 28, 163, 236, 862, 1160
BseCI ATCGAT 1 cut(s) 606
BseDI CCNNGG 5 cut(s) 26, 741, 861, 1158, 1168
BseGI GGATG 4 cut(s) 105, 183, 505, 827
BseLI CCNNNNNNNGG 3 cut(s) 121, 396, 669
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 2 cut(s) 665, 710
BseRI GAGGAG 1 cut(s) 86
BseX3I CGGCCG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 55
BseYI CCCAGC 1 cut(s) 227
Bsh1236I CGCG 4 cut(s) 146, 392, 1017, 1141
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 6 cut(s) 11, 62, 125, 272, 286, 1132
BshNI GGYRCC 1 cut(s) 419
BshVI ATCGAT 1 cut(s) 606
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 373
BsiHKCI CYCGRG 1 cut(s) 740
BsiSI CCGG 3 cut(s) 63, 122, 539
BslFI GGGAC 4 cut(s) 461, 832, 878, 924
BslI CCNNNNNNNGG 3 cut(s) 121, 396, 669
BsmAI GTCTC 2 cut(s) 700, 961
BsmFI GGGAC 4 cut(s) 461, 832, 878, 924
BsnI GGCC 6 cut(s) 11, 62, 125, 272, 286, 1132
Bso31I GGTCTC 1 cut(s) 700
BsoBI CYCGRG 1 cut(s) 740
Bsp1286I GDGCHC 1 cut(s) 373
Bsp1407I TGTACA 1 cut(s) 1092
Bsp143I GATC 3 cut(s) 274, 279, 1087
Bsp19I CCATGG 1 cut(s) 1168
BspACI CCGC 7 cut(s) 115, 144, 210, 287, 390, 563, 1015
BspANI GGCC 6 cut(s) 11, 62, 125, 272, 286, 1132
BspCNI CTCAG 1 cut(s) 152
BspDI ATCGAT 1 cut(s) 606
BspFNI CGCG 4 cut(s) 146, 392, 1017, 1141
BspLI GGNNCC 6 cut(s) 126, 167, 364, 421, 484, 940
BspMAI CTGCAG 1 cut(s) 496
BspMI ACCTGC 1 cut(s) 499
BspOI GCTAGC 1 cut(s) 972
BspPI GGATC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 419
BspTNI GGTCTC 1 cut(s) 700
BsrGI TGTACA 1 cut(s) 1092
BsrI ACTGG 2 cut(s) 665, 710
BssECI CCNNGG 5 cut(s) 26, 741, 861, 1158, 1168
BssMI GATC 3 cut(s) 274, 279, 1087
BssNAI GTATAC 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 1168
Bst1107I GTATAC 1 cut(s) 696
Bst2UI CCWGG 5 cut(s) 28, 163, 236, 862, 1160
Bst4CI ACNGT 6 cut(s) 81, 444, 452, 526, 751, 934
Bst6I CTCTTC 3 cut(s) 243, 403, 997
BstAUI TGTACA 1 cut(s) 1092
BstC8I GCNNGC 3 cut(s) 115, 148, 970
BstDEI CTNAG 1 cut(s) 139
BstDSI CCRYGG 1 cut(s) 1168
BstF5I GGATG 4 cut(s) 105, 183, 505, 827
BstFNI CGCG 4 cut(s) 146, 392, 1017, 1141
BstH2I RGCGCY 1 cut(s) 975
BstHHI GCGC 1 cut(s) 974
BstKTI GATC 3 cut(s) 277, 282, 1090
BstMAI GTCTC 2 cut(s) 700, 961
BstMBI GATC 3 cut(s) 274, 279, 1087
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 3 cut(s) 143, 174, 1138
BstNI CCWGG 5 cut(s) 28, 163, 236, 862, 1160
BstNSI RCATGY 1 cut(s) 177
BstSCI CCNGG 6 cut(s) 26, 161, 234, 538, 860, 1158
BstSFI CTRYAG 1 cut(s) 492
BstUI CGCG 4 cut(s) 146, 392, 1017, 1141
BstV1I GCAGC 1 cut(s) 55
BstZ17I GTATAC 1 cut(s) 696
BstZI CGGCCG 1 cut(s) 60
Bsu15I ATCGAT 1 cut(s) 606
BsuRI GGCC 6 cut(s) 11, 62, 125, 272, 286, 1132
BsuTUI ATCGAT 1 cut(s) 606
BtgI CCRYGG 1 cut(s) 1168
BtsCI GGATG 4 cut(s) 105, 183, 505, 827
BtsI GCAGTG 1 cut(s) 993
BtsIMutI CAGTG 4 cut(s) 77, 449, 457, 993
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 3 cut(s) 115, 148, 970
CaiI CAGNNNCTG 2 cut(s) 644, 842
CfoI GCGC 1 cut(s) 974
Cfr13I GGNCC 4 cut(s) 124, 363, 938, 1130
ClaI ATCGAT 1 cut(s) 606
CseI GACGC 3 cut(s) 44, 139, 1147
Csp6I GTAC 4 cut(s) 420, 440, 488, 1093
CviAII CATG 3 cut(s) 174, 619, 1169
CviQI GTAC 4 cut(s) 420, 440, 488, 1093
DdeI CTNAG 1 cut(s) 139
DpnI GATC 3 cut(s) 276, 281, 1089
DpnII GATC 3 cut(s) 274, 279, 1087
EaeI YGGCCR 2 cut(s) 60, 270
EagI CGGCCG 1 cut(s) 60
Eam1104I CTCTTC 3 cut(s) 243, 403, 997
EarI CTCTTC 3 cut(s) 243, 403, 997
EciI GGCGGA 1 cut(s) 199
Ecl136II GAGCTC 1 cut(s) 371
EclXI CGGCCG 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 1168
Eco147I AGGCCT 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 373
Eco31I GGTCTC 1 cut(s) 700
Eco47I GGWCC 2 cut(s) 363, 938
Eco52I CGGCCG 1 cut(s) 60
Eco53kI GAGCTC 1 cut(s) 371
Eco88I CYCGRG 1 cut(s) 740
EcoICRI GAGCTC 1 cut(s) 371
EcoO109I RGGNCCY 1 cut(s) 938
EcoRI GAATTC 1 cut(s) 1038
EcoRII CCWGG 5 cut(s) 26, 161, 234, 860, 1158
EcoT14I CCWWGG 1 cut(s) 1168
EcoT22I ATGCAT 1 cut(s) 724
EcoT38I GRGCYC 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 1168
FaeI CATG 3 cut(s) 177, 622, 1172
FaqI GGGAC 4 cut(s) 461, 832, 878, 924
FatI CATG 3 cut(s) 173, 618, 1168
FauI CCCGC 2 cut(s) 122, 570
FblI GTMKAC 2 cut(s) 20, 695
Fnu4HI GCNGC 3 cut(s) 44, 144, 287
FokI GGATG 4 cut(s) 92, 170, 512, 814
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 3 cut(s) 44, 144, 287
FspBI CTAG 6 cut(s) 459, 576, 804, 969, 999, 1148
GlaI GCGC 1 cut(s) 973
GluI GCNGC 3 cut(s) 44, 144, 287
GsaI CCCAGC 1 cut(s) 231
GsuI CTGGAG 2 cut(s) 184, 218
HaeII RGCGCY 1 cut(s) 975
HaeIII GGCC 6 cut(s) 11, 62, 125, 272, 286, 1132
HapII CCGG 3 cut(s) 63, 122, 539
HgaI GACGC 3 cut(s) 44, 139, 1147
HhaI GCGC 1 cut(s) 974
Hin1II CATG 3 cut(s) 177, 622, 1172
Hin6I GCGC 1 cut(s) 972
HinP1I GCGC 1 cut(s) 972
HincII GTYRAC 3 cut(s) 21, 930, 1034
HindII GTYRAC 3 cut(s) 21, 930, 1034
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 6 cut(s) 22, 400, 800, 980, 1021, 1079
HpaII CCGG 3 cut(s) 63, 122, 539
HphI GGTGA 1 cut(s) 773
Hpy166II GTNNAC 5 cut(s) 21, 337, 696, 930, 1034
Hpy188I TCNGA 7 cut(s) 279, 311, 652, 919, 979, 1044, 1087
Hpy188III TCNNGA 4 cut(s) 366, 593, 804, 1025
Hpy8I GTNNAC 5 cut(s) 21, 337, 696, 930, 1034
Hpy99I CGWCG 5 cut(s) 22, 38, 58, 61, 92
HpyAV CCTTC 6 cut(s) 128, 142, 256, 763, 914, 1001
HpyCH4III ACNGT 6 cut(s) 81, 444, 452, 526, 751, 934
HpyCH4V TGCA 6 cut(s) 177, 494, 657, 722, 824, 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 174, 1138
HpyF3I CTNAG 1 cut(s) 139
Hsp92II CATG 3 cut(s) 177, 622, 1172
HspAI GCGC 1 cut(s) 972
KpnI GGTACC 1 cut(s) 423
Kzo9I GATC 3 cut(s) 274, 279, 1087
LmnI GCTCC 5 cut(s) 30, 165, 376, 488, 504
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 2 cut(s) 544, 709
MaeI CTAG 6 cut(s) 459, 576, 804, 969, 999, 1148
MaeIII GTNAC 2 cut(s) 253, 1150
MalI GATC 3 cut(s) 276, 281, 1089
MboI GATC 3 cut(s) 274, 279, 1087
MboII GAAGA 4 cut(s) 260, 420, 1014, 1125
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 3 cut(s) 899, 906, 1038
MluI ACGCGT 1 cut(s) 1139
MlyI GAGTC 2 cut(s) 16, 809
Mph1103I ATGCAT 1 cut(s) 724
MseI TTAA 4 cut(s) 83, 627, 1053, 1104
MspA1I CMGCKG 2 cut(s) 46, 565
MspI CCGG 3 cut(s) 63, 122, 539
MspR9I CCNGG 6 cut(s) 28, 163, 236, 540, 862, 1160
MvaI CCWGG 5 cut(s) 28, 163, 236, 862, 1160
MvnI CGCG 4 cut(s) 146, 392, 1017, 1141
MwoI GCNNNNNNNGC 3 cut(s) 143, 174, 1138
NciI CCSGG 1 cut(s) 540
NcoI CCATGG 1 cut(s) 1168
NdeII GATC 3 cut(s) 274, 279, 1087
NheI GCTAGC 1 cut(s) 968
NlaIII CATG 3 cut(s) 177, 622, 1172
NlaIV GGNNCC 6 cut(s) 126, 167, 364, 421, 484, 940
NmuCI GTSAC 1 cut(s) 253
NsiI ATGCAT 1 cut(s) 724
NspI RCATGY 1 cut(s) 177
PceI AGGCCT 1 cut(s) 11
PfeI GAWTC 4 cut(s) 400, 980, 1021, 1079
PfoI TCCNGGA 1 cut(s) 161
PkrI GCNGC 3 cut(s) 45, 145, 288
PleI GAGTC 2 cut(s) 16, 808
PpsI GAGTC 2 cut(s) 16, 808
PpuMI RGGWCCY 1 cut(s) 938
PsiI TTATAA 2 cut(s) 347, 677
Psp124BI GAGCTC 1 cut(s) 373
Psp5II RGGWCCY 1 cut(s) 938
Psp6I CCWGG 5 cut(s) 26, 161, 234, 860, 1158
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 5 cut(s) 26, 161, 234, 860, 1158
PspN4I GGNNCC 6 cut(s) 126, 167, 364, 421, 484, 940
PspPI GGNCC 4 cut(s) 124, 363, 938, 1130
PspPPI RGGWCCY 1 cut(s) 938
PstI CTGCAG 1 cut(s) 496
PstNI CAGNNNCTG 2 cut(s) 644, 842
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 4 cut(s) 421, 441, 489, 1094
RsaNI GTAC 4 cut(s) 420, 440, 488, 1093
SacI GAGCTC 1 cut(s) 373
SalI GTCGAC 1 cut(s) 19
SaqAI TTAA 4 cut(s) 83, 627, 1053, 1104
SatI GCNGC 3 cut(s) 44, 144, 287
Sau3AI GATC 3 cut(s) 274, 279, 1087
Sau96I GGNCC 4 cut(s) 124, 363, 938, 1130
SchI GAGTC 2 cut(s) 16, 809
ScrFI CCNGG 6 cut(s) 28, 163, 236, 540, 862, 1160
SduI GDGCHC 1 cut(s) 373
SfaNI GCATC 2 cut(s) 544, 709
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 2 cut(s) 363, 938
SpeI ACTAGT 1 cut(s) 575
Sse9I AATT 3 cut(s) 899, 906, 1038
SseBI AGGCCT 1 cut(s) 11
SsiI CCGC 7 cut(s) 115, 144, 210, 287, 390, 563, 1015
SspMI CTAG 6 cut(s) 459, 576, 804, 969, 999, 1148
SstI GAGCTC 1 cut(s) 373
StuI AGGCCT 1 cut(s) 11
StyD4I CCNGG 6 cut(s) 26, 161, 234, 538, 860, 1158
StyI CCWWGG 1 cut(s) 1168
TaaI ACNGT 6 cut(s) 81, 444, 452, 526, 751, 934
TaqI TCGA 3 cut(s) 20, 572, 606
TasI AATT 3 cut(s) 899, 906, 1038
TatI WGTACW 1 cut(s) 1092
TauI GCSGC 2 cut(s) 146, 289
TfiI GAWTC 4 cut(s) 400, 980, 1021, 1079
Tru1I TTAA 4 cut(s) 83, 627, 1053, 1104
Tru9I TTAA 4 cut(s) 83, 627, 1053, 1104
TscAI CASTG 4 cut(s) 84, 449, 457, 1000
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 283
TspGWI ACGGA 3 cut(s) 363, 475, 1091
TspRI CASTG 4 cut(s) 84, 449, 457, 1000
VpaK11BI GGWCC 2 cut(s) 363, 938
XapI RAATTY 1 cut(s) 1038
XbaI TCTAGA 1 cut(s) 803
XceI RCATGY 1 cut(s) 177
XmiI GTMKAC 2 cut(s) 20, 695
XspI CTAG 6 cut(s) 459, 576, 804, 969, 999, 1148
Zsp2I ATGCAT 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.