AT5G63630

RNA helicase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
25472445 .. 25475927
3483 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63630.1

Sequence Viewer

Length: 1569 bp
ATGGGAGATATTGGGGATTTGCTTAGTGAAGATGATGAGGAAGAGGACCAAGATTATGACTTTCTTAAGAAGAAAGCTGTTTCTGCTTTTGGGTTTGATAAGGAGAATGTTATAGAAGCGGATAAAACGAGGAATGCAAATGATTCTTATTTGACTAAGACAAGATTTGATCACTATCCATTGTCTCCCTTATCGCTAAAGGCAATCAAGGATGCTGGATACGAGACAATGACTGTTGTTCAGGAAGCTACTCTCCCTATAATTCTCAAAGGCAAGGATGTCCTAGCTAAGGCCAAAACAGGAACTGGGAAAACTGTAGCGTTTTTGCTTCCATCAATTGAAGTAGTTGTCAAATCTCCTCCTACAAGCCCGGATAATAAGCGACCCCCAATCCTTGCGCTTGTGATATGCCCTACTAGAGAACTTGCCAATCAAGCTGCTACAGAAGCAAACACCTTGCTAAAGTATCATCCATCTATTGGTGTTCAAGTTGTGATTGGAGGTACGAGACTTGGTTTAGAGCAAAAGCGTATGCAAACAAATCCTTGCCAGATTTTAGTGGCTACACCTGGAAGGCTCAAAGACCATATCGAGAACACGCCAGGCTTTGCAACGAGGTTAAAGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTTTTAGATATGGGCTTTCGCAAGGACATTGAGAGGATAATTTCCGCTGTTCCTAAGGAGAGACAAACTTTTCTATTTTCCGCCACAGTACCTGAAGAGGTACGCCAAATATGCCTTGTTGCTCTAAGGCGGGATCACGAGTTTGTCAATTGTGTTCATGAAGGCACTATAGAGACGCATCAACAGGTCAGACAAATGCACATGATTGCATCACTGGACAGACATTTCTCTCTTCTGTACACACTTCTTCGCGAACACATTATGGGTAACGTAGACTATAAGGTCATTGTCTTCTGTACAACGGCCATGGTTACAAAATTAGTGGCTGATCTACTTGGTGAGCTAAACTTAAACGTGAGAGAGATCCATTCTAGAAAACCGCAGAGTTACAGGACAAGGGTTTCTAACGAGTTCCGAAAATCCAAGGGTTTGATTCTCGTAACATCTGATGTATCTGCTCGAGGAGTTGATTACCCTGATGTGACCCTTGTTTTACAGGTTGGATTGCCAAAAGACAGAGAACAATATATACACAGACTTGGTAGAACCGGGCGAAAAGGAAAGGAAGGAGAAGGCATATTGTTGTTGGCACCATGGGAGGAATACTTTCTATCATCTCTTAAAGATTTACCCATCACTAAGTCTCCTCTGCCATCAATAGACCCAGAAACTGTAAAAAAGGTGCAAAAGGCGCTTTGCCATGTCGAGATGAGGAACAAAGAGGCGGCGTATCAGGCTTGGTTGGGTTACTACAACTCACAGAAGATGATTGGAAGAGACAAAGACAGGCTTGTGGAGTTGGCAAACGAGTTTAGTCGTAGTATGGGACTTGACAATCCTCCAGCTATACCAAAACTTATCCTTGGTAAGATGGGTCTCAAAAATGTTCCTGGTCTTAGAGCCAAGTAA

Protein Analysis

522

Amino Acids

58.54

Weight (kDa)

8.83

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 79 - 256 1.6e-45 DEAD/DEAH box helicase
ResIII PF04851 90 - 251 1.5e-06 Type III restriction enzyme, res subunit
Helicase_C PF00271 302 - 407 1.7e-22 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 941
AccB1I GGYRCC 1 cut(s) 1249
AccB7I CCANNNNNTGG 1 cut(s) 479
AccI GTMKAC 1 cut(s) 933
AccII CGCG 1 cut(s) 912
AciI CCGC 6 cut(s) 119, 705, 741, 790, 1040, 1385
AclWI GGATC 2 cut(s) 801, 1018
AcoI YGGCCR 1 cut(s) 963
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 5 cut(s) 505, 750, 762, 899, 958
AfiI CCNNNNNNNGG 2 cut(s) 289, 479
AflII CTTAAG 1 cut(s) 65
AgsI TTSAA 2 cut(s) 341, 488
AjnI CCWGG 3 cut(s) 568, 601, 1549
AluBI AGCT 7 cut(s) 77, 248, 287, 437, 653, 1003, 1505
AluI AGCT 7 cut(s) 77, 248, 287, 437, 653, 1003, 1505
Alw26I GTCTC 8 cut(s) 189, 218, 502, 715, 827, 1308, 1431, 1541
AlwI GGATC 2 cut(s) 801, 1018
AlwNI CAGNNNCTG 3 cut(s) 305, 752, 1331
Ama87I CYCGRG 1 cut(s) 1119
AoxI GGCC 2 cut(s) 291, 963
ApeKI GCWGC 1 cut(s) 437
Asp700I GAANNNNTTC 1 cut(s) 1266
AspLEI GCGC 2 cut(s) 400, 1354
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 2 cut(s) 371, 1210
AsuHPI GGTGA 1 cut(s) 1010
AvaI CYCGRG 1 cut(s) 1119
AvaII GGWCC 1 cut(s) 46
AxyI CCTNAGG 1 cut(s) 714
BanI GGYRCC 1 cut(s) 1249
BauI CACGAG 1 cut(s) 797
BbsI GAAGAC 1 cut(s) 943
BbvI GCAGC 1 cut(s) 424
BccI CCATC 5 cut(s) 340, 481, 1301, 1321, 1525
BceAI ACGGC 1 cut(s) 978
BciT130I CCWGG 3 cut(s) 570, 603, 1551
BciVI GTATCC 1 cut(s) 212
BclI TGATCA 2 cut(s) 169, 655
BcnI CCSGG 2 cut(s) 371, 1210
BcoDI GTCTC 8 cut(s) 189, 218, 502, 715, 827, 1308, 1431, 1541
BfaI CTAG 3 cut(s) 284, 417, 1032
BfmI CTRYAG 3 cut(s) 315, 441, 828
BfoI RGCGCY 1 cut(s) 1355
BfrI CTTAAG 1 cut(s) 65
BfuI GTATCC 1 cut(s) 212
BisI GCNGC 2 cut(s) 438, 1386
BlsI GCNGC 2 cut(s) 439, 1387
Bme1390I CCNGG 5 cut(s) 371, 570, 603, 1210, 1551
Bme18I GGWCC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 1119
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 1251
BmrFI CCNGG 5 cut(s) 371, 570, 603, 1210, 1551
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 3 cut(s) 202, 847, 878
BmuI ACTGGG 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 943
BpmI CTGGAG 1 cut(s) 1485
Bpu10I CCTNAGC 1 cut(s) 288
BpuMI CCSGG 2 cut(s) 371, 1210
BsaBI GATNNNNATC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 1541
BsaJI CCNNGG 4 cut(s) 966, 1083, 1253, 1522
BsaXI ACNNNNNCTCC 2 cut(s) 1288, 1318
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 479
Bse1I ACTGG 2 cut(s) 310, 879
Bse21I CCTNAGG 1 cut(s) 714
Bse8I GATNNNNATC 1 cut(s) 174
BseBI CCWGG 3 cut(s) 570, 603, 1551
BseDI CCNNGG 4 cut(s) 966, 1083, 1253, 1522
BseGI GGATG 3 cut(s) 217, 283, 469
BseJI GATNNNNATC 1 cut(s) 174
BseLI CCNNNNNNNGG 2 cut(s) 289, 479
BseNI ACTGG 2 cut(s) 310, 879
BseRI GAGGAG 3 cut(s) 348, 1137, 1296
BseXI GCAGC 1 cut(s) 424
Bsh1236I CGCG 1 cut(s) 912
BshFI GGCC 2 cut(s) 293, 965
BshNI GGYRCC 1 cut(s) 1249
BsiHKCI CYCGRG 1 cut(s) 1119
BsiSI CCGG 2 cut(s) 371, 1209
BslFI GGGAC 1 cut(s) 1500
BslI CCNNNNNNNGG 2 cut(s) 289, 479
BsmAI GTCTC 8 cut(s) 189, 218, 502, 715, 827, 1308, 1431, 1541
BsmBI CGTCTC 1 cut(s) 827
BsmFI GGGAC 1 cut(s) 1500
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 2 cut(s) 293, 965
Bso31I GGTCTC 1 cut(s) 1541
BsoBI CYCGRG 1 cut(s) 1119
Bsp1407I TGTACA 2 cut(s) 897, 956
Bsp143I GATC 5 cut(s) 169, 655, 793, 988, 1023
Bsp19I CCATGG 2 cut(s) 966, 1253
Bsp68I TCGCGA 1 cut(s) 912
BspACI CCGC 6 cut(s) 119, 705, 741, 790, 1040, 1385
BspANI GGCC 2 cut(s) 293, 965
BspFNI CGCG 1 cut(s) 912
BspHI TCATGA 1 cut(s) 817
BspLI GGNNCC 1 cut(s) 1251
BspPI GGATC 2 cut(s) 801, 1018
BspT107I GGYRCC 1 cut(s) 1249
BspTI CTTAAG 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 1541
BsrGI TGTACA 2 cut(s) 897, 956
BsrI ACTGG 2 cut(s) 310, 879
BssECI CCNNGG 4 cut(s) 966, 1083, 1253, 1522
BssMI GATC 5 cut(s) 169, 655, 793, 988, 1023
BssSI CACGAG 1 cut(s) 797
BssT1I CCWWGG 4 cut(s) 966, 1083, 1253, 1522
Bst2BI CACGAG 1 cut(s) 797
Bst2UI CCWGG 3 cut(s) 570, 603, 1551
Bst4CI ACNGT 4 cut(s) 235, 316, 748, 1333
Bst6I CTCTTC 4 cut(s) 36, 750, 897, 1429
BstAFI CTTAAG 1 cut(s) 65
BstAUI TGTACA 2 cut(s) 897, 956
BstDEI CTNAG 7 cut(s) 23, 156, 288, 714, 785, 1299, 1556
BstDSI CCRYGG 2 cut(s) 966, 1253
BstENI CCTNNNNNAGG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 217, 283, 469
BstFNI CGCG 1 cut(s) 912
BstH2I RGCGCY 1 cut(s) 1355
BstHHI GCGC 2 cut(s) 400, 1354
BstKTI GATC 5 cut(s) 172, 658, 796, 991, 1026
BstMAI GTCTC 8 cut(s) 189, 218, 502, 715, 827, 1308, 1431, 1541
BstMBI GATC 5 cut(s) 169, 655, 793, 988, 1023
BstMWI GCNNNNNNNGC 6 cut(s) 83, 434, 446, 771, 1351, 1394
BstNI CCWGG 3 cut(s) 570, 603, 1551
BstSCI CCNGG 5 cut(s) 369, 568, 601, 1208, 1549
BstSFI CTRYAG 3 cut(s) 315, 441, 828
BstUI CGCG 1 cut(s) 912
BstV1I GCAGC 1 cut(s) 424
BstV2I GAAGAC 1 cut(s) 943
BstX2I RGATCY 1 cut(s) 1023
BstYI RGATCY 1 cut(s) 1023
Bsu36I CCTNAGG 1 cut(s) 714
BsuI GTATCC 1 cut(s) 212
BsuRI GGCC 2 cut(s) 293, 965
BtgI CCRYGG 2 cut(s) 966, 1253
BtsCI GGATG 3 cut(s) 217, 283, 469
BtsIMutI CAGTG 1 cut(s) 872
BtuMI TCGCGA 1 cut(s) 912
CaiI CAGNNNCTG 3 cut(s) 305, 752, 1331
CciI TCATGA 1 cut(s) 817
CfoI GCGC 2 cut(s) 400, 1354
Cfr13I GGNCC 1 cut(s) 46
CseI GACGC 1 cut(s) 844
Csp6I GTAC 5 cut(s) 504, 749, 761, 898, 957
CspCI CAANNNNNGTGG 2 cut(s) 963, 998
CviAII CATG 5 cut(s) 818, 862, 967, 1254, 1361
CviQI GTAC 5 cut(s) 504, 749, 761, 898, 957
DdeI CTNAG 7 cut(s) 23, 156, 288, 714, 785, 1299, 1556
DpnI GATC 5 cut(s) 171, 657, 795, 990, 1025
DpnII GATC 5 cut(s) 169, 655, 793, 988, 1023
DrdI GACNNNNNNGTC 1 cut(s) 941
DseDI GACNNNNNNGTC 1 cut(s) 941
EaeI YGGCCR 1 cut(s) 963
Eam1104I CTCTTC 4 cut(s) 36, 750, 897, 1429
EarI CTCTTC 4 cut(s) 36, 750, 897, 1429
EciI GGCGGA 1 cut(s) 730
Eco130I CCWWGG 4 cut(s) 966, 1083, 1253, 1522
Eco31I GGTCTC 1 cut(s) 1541
Eco47I GGWCC 1 cut(s) 46
Eco57I CTGAAG 1 cut(s) 774
Eco81I CCTNAGG 1 cut(s) 714
Eco88I CYCGRG 1 cut(s) 1119
EcoNI CCTNNNNNAGG 1 cut(s) 287
EcoRII CCWGG 3 cut(s) 568, 601, 1549
EcoT14I CCWWGG 4 cut(s) 966, 1083, 1253, 1522
ErhI CCWWGG 4 cut(s) 966, 1083, 1253, 1522
Esp3I CGTCTC 1 cut(s) 827
FaeI CATG 5 cut(s) 821, 865, 970, 1257, 1364
FalI AAGNNNNNCTT 2 cut(s) 1434, 1466
FaqI GGGAC 1 cut(s) 1500
FatI CATG 5 cut(s) 817, 861, 966, 1253, 1360
FauI CCCGC 1 cut(s) 783
FbaI TGATCA 2 cut(s) 169, 655
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 2 cut(s) 438, 1386
FokI GGATG 3 cut(s) 224, 290, 456
Fsp4HI GCNGC 2 cut(s) 438, 1386
FspBI CTAG 3 cut(s) 284, 417, 1032
GlaI GCGC 2 cut(s) 399, 1353
GluI GCNGC 2 cut(s) 438, 1386
GsuI CTGGAG 1 cut(s) 1485
HaeII RGCGCY 1 cut(s) 1355
HaeIII GGCC 2 cut(s) 293, 965
HapII CCGG 2 cut(s) 371, 1209
HgaI GACGC 1 cut(s) 844
HhaI GCGC 2 cut(s) 400, 1354
Hin1II CATG 5 cut(s) 821, 865, 970, 1257, 1364
Hin6I GCGC 2 cut(s) 398, 1352
HinP1I GCGC 2 cut(s) 398, 1352
HinfI GANTC 2 cut(s) 143, 1093
HpaII CCGG 2 cut(s) 371, 1209
HphI GGTGA 1 cut(s) 1010
Hpy166II GTNNAC 2 cut(s) 900, 934
Hpy188I TCNGA 3 cut(s) 851, 1076, 1108
Hpy188III TCNNGA 7 cut(s) 242, 592, 797, 818, 911, 1032, 1366
Hpy8I GTNNAC 2 cut(s) 900, 934
HpyAV CCTTC 4 cut(s) 567, 815, 1220, 1226
HpyCH4III ACNGT 4 cut(s) 235, 316, 748, 1333
HpyCH4IV ACGT 2 cut(s) 930, 1014
HpyCH4V TGCA 6 cut(s) 137, 535, 611, 859, 869, 1345
HpyF10VI GCNNNNNNNGC 6 cut(s) 83, 434, 446, 771, 1351, 1394
HpyF3I CTNAG 7 cut(s) 23, 156, 288, 714, 785, 1299, 1556
HpySE526I ACGT 2 cut(s) 930, 1014
Hsp92II CATG 5 cut(s) 821, 865, 970, 1257, 1364
HspAI GCGC 2 cut(s) 398, 1352
Ksp22I TGATCA 2 cut(s) 169, 655
Kzo9I GATC 5 cut(s) 169, 655, 793, 988, 1023
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 3 cut(s) 202, 847, 878
MaeI CTAG 3 cut(s) 284, 417, 1032
MaeII ACGT 2 cut(s) 930, 1014
MaeIII GTNAC 6 cut(s) 926, 970, 1046, 1099, 1141, 1406
MalI GATC 5 cut(s) 171, 657, 795, 990, 1025
MboI GATC 5 cut(s) 169, 655, 793, 988, 1023
MboII GAAGA 9 cut(s) 41, 53, 82, 767, 884, 899, 943, 1435, 1446
MfeI CAATTG 2 cut(s) 336, 808
MflI RGATCY 1 cut(s) 1023
MluCI AATT 5 cut(s) 261, 336, 699, 808, 977
MmeI TCCRAC 1 cut(s) 1141
MroXI GAANNNNTTC 1 cut(s) 1266
MseI TTAA 4 cut(s) 66, 620, 1010, 1281
MspA1I CMGCKG 1 cut(s) 707
MspCI CTTAAG 1 cut(s) 65
MspI CCGG 2 cut(s) 371, 1209
MspR9I CCNGG 5 cut(s) 371, 570, 603, 1210, 1551
MunI CAATTG 2 cut(s) 336, 808
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 3 cut(s) 570, 603, 1551
MvnI CGCG 1 cut(s) 912
MwoI GCNNNNNNNGC 6 cut(s) 83, 434, 446, 771, 1351, 1394
NciI CCSGG 2 cut(s) 371, 1210
NcoI CCATGG 2 cut(s) 966, 1253
NdeII GATC 5 cut(s) 169, 655, 793, 988, 1023
NlaIII CATG 5 cut(s) 821, 865, 970, 1257, 1364
NlaIV GGNNCC 1 cut(s) 1251
NmuCI GTSAC 1 cut(s) 1141
NruI TCGCGA 1 cut(s) 912
PaeR7I CTCGAG 1 cut(s) 1119
PagI TCATGA 1 cut(s) 817
PctI GAATGC 1 cut(s) 139
PdmI GAANNNNTTC 1 cut(s) 1266
PfeI GAWTC 2 cut(s) 143, 1093
PflMI CCANNNNNTGG 1 cut(s) 479
PkrI GCNGC 2 cut(s) 439, 1387
Psp6I CCWGG 3 cut(s) 568, 601, 1549
PspGI CCWGG 3 cut(s) 568, 601, 1549
PspN4I GGNNCC 1 cut(s) 1251
PspPI GGNCC 1 cut(s) 46
PspXI VCTCGAGB 1 cut(s) 1119
PsrI GAACNNNNNNTAC 2 cut(s) 1173, 1205
PstNI CAGNNNCTG 3 cut(s) 305, 752, 1331
PsuI RGATCY 1 cut(s) 1023
RruI TCGCGA 1 cut(s) 912
RsaI GTAC 5 cut(s) 505, 750, 762, 899, 958
RsaNI GTAC 5 cut(s) 504, 749, 761, 898, 957
SaqAI TTAA 4 cut(s) 66, 620, 1010, 1281
SatI GCNGC 2 cut(s) 438, 1386
Sau3AI GATC 5 cut(s) 169, 655, 793, 988, 1023
Sau96I GGNCC 1 cut(s) 46
ScrFI CCNGG 5 cut(s) 371, 570, 603, 1210, 1551
SfaNI GCATC 3 cut(s) 202, 847, 878
SfcI CTRYAG 3 cut(s) 315, 441, 828
Sfr274I CTCGAG 1 cut(s) 1119
SinI GGWCC 1 cut(s) 46
SlaI CTCGAG 1 cut(s) 1119
SmlI CTYRAG 2 cut(s) 65, 1119
SmoI CTYRAG 2 cut(s) 65, 1119
Sse9I AATT 5 cut(s) 261, 336, 699, 808, 977
SsiI CCGC 6 cut(s) 119, 705, 741, 790, 1040, 1385
SspMI CTAG 3 cut(s) 284, 417, 1032
StyD4I CCNGG 5 cut(s) 369, 568, 601, 1208, 1549
StyI CCWWGG 4 cut(s) 966, 1083, 1253, 1522
TaaI ACNGT 4 cut(s) 235, 316, 748, 1333
TaiI ACGT 2 cut(s) 933, 1017
TaqI TCGA 3 cut(s) 591, 1120, 1365
TasI AATT 5 cut(s) 261, 336, 699, 808, 977
TatI WGTACW 2 cut(s) 897, 956
TauI GCSGC 1 cut(s) 1388
TfiI GAWTC 2 cut(s) 143, 1093
Tru1I TTAA 4 cut(s) 66, 620, 1010, 1281
Tru9I TTAA 4 cut(s) 66, 620, 1010, 1281
TscAI CASTG 1 cut(s) 879
TseFI GTSAC 1 cut(s) 1141
TseI GCWGC 1 cut(s) 437
Tsp45I GTSAC 1 cut(s) 1141
TspDTI ATGAA 3 cut(s) 663, 806, 834
TspRI CASTG 1 cut(s) 879
Van91I CCANNNNNTGG 1 cut(s) 479
Vha464I CTTAAG 1 cut(s) 65
VpaK11BI GGWCC 1 cut(s) 46
XagI CCTNNNNNAGG 1 cut(s) 287
XbaI TCTAGA 1 cut(s) 1031
XhoI CTCGAG 1 cut(s) 1119
XmiI GTMKAC 1 cut(s) 933
XmnI GAANNNNTTC 1 cut(s) 1266
XspI CTAG 3 cut(s) 284, 417, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.