Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8196408.1

Orthogroup ID

OG0010499

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 705

Gene Structure 705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8196408.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 514 bp

actcctctctcaccttctccatctcccaccccaacccttccatgaaaacgacgtcgctttcgtccactattatgcccgttaagctcctcctcaacaacccttctctcccagtaacccgcttcctctccatgaaattcggaccctccatttccgctcctcgacccgtacccgctttctcccgggtcttcccgctccgcctcaggtacctcgccctcggctcccagcgcacattctccacccgcgccttccggaccccccgaaccgggtcgggctcccaattctcgcgcggctacgagcgaaaggcggcggtcgggggatccaagagcctggtcgacgacgaggcggagctgagtgactgggtcagcgagttgaggaccgacccgacccgcggtggcggtggccggggagaggaatcggacggtgctggtcggagaggtagtagggttagagataggggcggcgatagagagccgtatccggcgaagcggagcaggagagatagcggcgccgacga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

170

Amino Acids

18.49

Weight (kDa)

11.25

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63630 AT5G63630
fragaria_vesca	FvH4_7g16280
malus_domestica	MD01G1079300.v1.1 MD07G1148200.v1.1
prunus_persica	Prupe.2G186500_v2.0.a1
pyrus_communis	pycom01g10760 pycom07g14720
rosa_chinensis	RchiOBHm_Chr1g0359291
rosa_laevigata	RLG00000027883
rosa_multiflora	Rmu_co8196408.1_g000001 Rmu_ssc0000135.1_g000038
rosa_roxburghii	Rroxscaffold_4G00297140 Rroxscaffold_5G00348520
rosa_rugosa	Rorug01G0269200
rosa_samantha	Rh1AG283200 Rh1BG249400 Rh1CG267300 Rh1DG278300 Rh2AG248100
rosa_wichuraiana	Rw1G025140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	55
Acc65I	GGTACC	1 cut(s)	203
AccB1I	GGYRCC	2 cut(s)	203, 505
AccBSI	CCGCTC	2 cut(s)	154, 192
AccI	GTMKAC	1 cut(s)	332
AccII	CGCG	4 cut(s)	242, 285, 287, 389
AccIII	TCCGGA	1 cut(s)	248
AclWI	GGATC	2 cut(s)	311, 324
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	133
AcyI	GRCGYC	2 cut(s)	52, 506
AfaI	GTAC	2 cut(s)	167, 205
AfiI	CCNNNNNNNGG	4 cut(s)	262, 263, 388, 408
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	2 cut(s)	84, 348
AluI	AGCT	2 cut(s)	84, 348
AlwI	GGATC	2 cut(s)	311, 324
Ama87I	CYCGRG	1 cut(s)	179
Aor13HI	TCCGGA	1 cut(s)	248
AoxI	GGCC	1 cut(s)	399
ApoI	RAATTY	1 cut(s)	133
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
Asp718I	GGTACC	1 cut(s)	203
AspLEI	GCGC	4 cut(s)	227, 244, 287, 508
AspS9I	GGNCC	3 cut(s)	139, 251, 374
AsuC2I	CCSGG	4 cut(s)	180, 181, 264, 403
AsuHPI	GGTGA	1 cut(s)	3
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	3 cut(s)	139, 251, 374
AxyI	CCTNAGG	1 cut(s)	199
BamHI	GGATCC	1 cut(s)	316
BanI	GGYRCC	2 cut(s)	203, 505
BanII	GRGCYC	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	177
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	456
BciT130I	CCWGG	1 cut(s)	328
BciVI	GTATCC	1 cut(s)	485
BcnI	CCSGG	4 cut(s)	180, 181, 264, 403
BfoI	RGCGCY	1 cut(s)	509
BfuI	GTATCC	1 cut(s)	485
BisI	GCNGC	4 cut(s)	288, 305, 459, 504
BlsI	GCNGC	4 cut(s)	289, 306, 460, 505
Bme1390I	CCNGG	5 cut(s)	180, 181, 264, 328, 403
Bme18I	GGWCC	3 cut(s)	139, 251, 374
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	3 cut(s)	139, 251, 374
BmiI	GGNNCC	7 cut(s)	141, 205, 219, 253, 273, 318, 507
BmrFI	CCNGG	5 cut(s)	180, 181, 264, 328, 403
BmrI	ACTGGG	2 cut(s)	103, 366
BmuI	ACTGGG	2 cut(s)	103, 366
BpiI	GAAGAC	1 cut(s)	177
BpuMI	CCSGG	4 cut(s)	180, 181, 264, 403
BsaHI	GRCGYC	2 cut(s)	52, 506
BsaJI	CCNNGG	4 cut(s)	179, 213, 387, 402
BsaWI	WCCGGW	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	4 cut(s)	262, 263, 388, 408
Bse1I	ACTGG	2 cut(s)	109, 361
Bse21I	CCTNAGG	1 cut(s)	199
BseAI	TCCGGA	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	328
BseDI	CCNNGG	4 cut(s)	179, 213, 387, 402
BseLI	CCNNNNNNNGG	4 cut(s)	262, 263, 388, 408
BseMII	CTCAG	2 cut(s)	213, 340
BseNI	ACTGG	2 cut(s)	109, 361
BseRI	GAGGAG	3 cut(s)	76, 79, 146
BseYI	CCCAGC	1 cut(s)	221
Bsh1236I	CGCG	4 cut(s)	242, 285, 287, 389
Bsh1285I	CGRYCG	1 cut(s)	311
BshFI	GGCC	1 cut(s)	401
BshNI	GGYRCC	2 cut(s)	203, 505
BsiEI	CGRYCG	1 cut(s)	311
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	5 cut(s)	180, 249, 263, 402, 478
BslI	CCNNNNNNNGG	4 cut(s)	262, 263, 388, 408
BsnI	GGCC	1 cut(s)	401
BsoBI	CYCGRG	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp13I	TCCGGA	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	2 cut(s)	212, 341
BspEI	TCCGGA	1 cut(s)	248
BspFNI	CGCG	4 cut(s)	242, 285, 287, 389
BspLI	GGNNCC	7 cut(s)	141, 205, 219, 253, 273, 318, 507
BspPI	GGATC	2 cut(s)	311, 324
BspT107I	GGYRCC	2 cut(s)	203, 505
BsrBI	CCGCTC	2 cut(s)	154, 192
BsrI	ACTGG	2 cut(s)	109, 361
BssECI	CCNNGG	4 cut(s)	179, 213, 387, 402
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	2 cut(s)	52, 506
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	421
BstACI	GRCGYC	2 cut(s)	52, 506
BstDEI	CTNAG	2 cut(s)	199, 349
BstDSI	CCRYGG	1 cut(s)	387
BstFNI	CGCG	4 cut(s)	242, 285, 287, 389
BstH2I	RGCGCY	1 cut(s)	509
BstHHI	GCGC	4 cut(s)	227, 244, 287, 508
BstKTI	GATC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	316
BstMCI	CGRYCG	1 cut(s)	311
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 224
BstNI	CCWGG	1 cut(s)	328
BstSCI	CCNGG	5 cut(s)	178, 179, 262, 326, 401
BstUI	CGCG	4 cut(s)	242, 285, 287, 389
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	316
BstXI	CCANNNNNNTGG	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	316
Bsu36I	CCTNAGG	1 cut(s)	199
BsuI	GTATCC	1 cut(s)	485
BsuRI	GGCC	1 cut(s)	401
BtgI	CCRYGG	1 cut(s)	387
CfoI	GCGC	4 cut(s)	227, 244, 287, 508
Cfr13I	GGNCC	3 cut(s)	139, 251, 374
Cfr42I	CCGCGG	1 cut(s)	390
Cfr9I	CCCGGG	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	166, 204
CviAII	CATG	2 cut(s)	42, 129
CviJI	RGCY	8 cut(s)	84, 218, 272, 290, 326, 348, 401, 471
CviKI_1	RGCY	8 cut(s)	84, 218, 272, 290, 326, 348, 401, 471
CviQI	GTAC	2 cut(s)	166, 204
DdeI	CTNAG	2 cut(s)	199, 349
DinI	GGCGCC	1 cut(s)	507
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
EaeI	YGGCCR	1 cut(s)	399
EciI	GGCGGA	2 cut(s)	184, 358
Eco24I	GRGCYC	1 cut(s)	274
Eco47I	GGWCC	3 cut(s)	139, 251, 374
Eco81I	CCTNAGG	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	274
EgeI	GGCGCC	1 cut(s)	507
EheI	GGCGCC	1 cut(s)	507
FaeI	CATG	2 cut(s)	45, 132
FaiI	YATR	3 cut(s)	43, 73, 130
FatI	CATG	2 cut(s)	41, 128
FauI	CCCGC	5 cut(s)	124, 177, 197, 247, 394
FblI	GTMKAC	1 cut(s)	332
Fnu4HI	GCNGC	4 cut(s)	288, 305, 459, 504
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	4 cut(s)	288, 305, 459, 504
GlaI	GCGC	4 cut(s)	226, 243, 286, 507
GluI	GCNGC	4 cut(s)	288, 305, 459, 504
GsaI	CCCAGC	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	509
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	5 cut(s)	180, 249, 263, 402, 478
HhaI	GCGC	4 cut(s)	227, 244, 287, 508
Hin1I	GRCGYC	2 cut(s)	52, 506
Hin1II	CATG	2 cut(s)	45, 132
Hin6I	GCGC	4 cut(s)	225, 242, 285, 506
HinP1I	GCGC	4 cut(s)	225, 242, 285, 506
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HinfI	GANTC	1 cut(s)	412
HpaII	CCGG	5 cut(s)	180, 249, 263, 402, 478
HphI	GGTGA	1 cut(s)	3
Hpy166II	GTNNAC	2 cut(s)	65, 333
Hpy188I	TCNGA	3 cut(s)	139, 417, 431
Hpy188III	TCNNGA	1 cut(s)	249
Hpy8I	GTNNAC	2 cut(s)	65, 333
Hpy99I	CGWCG	5 cut(s)	54, 57, 337, 340, 514
HpyAV	CCTTC	4 cut(s)	24, 47, 110, 255
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 224
HpyF3I	CTNAG	2 cut(s)	199, 349
HpySE526I	ACGT	1 cut(s)	52
Hsp92I	GRCGYC	2 cut(s)	52, 506
Hsp92II	CATG	2 cut(s)	45, 132
HspAI	GCGC	4 cut(s)	225, 242, 285, 506
KasI	GGCGCC	1 cut(s)	505
Kpn2I	TCCGGA	1 cut(s)	248
KpnI	GGTACC	1 cut(s)	207
KspI	CCGCGG	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	316
LmnI	GCTCC	7 cut(s)	89, 159, 197, 223, 277, 345, 488
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	2 cut(s)	111, 352
MalI	GATC	1 cut(s)	318
MbiI	CCGCTC	2 cut(s)	154, 192
MboI	GATC	1 cut(s)	316
MboII	GAAGA	1 cut(s)	177
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	2 cut(s)	133, 277
Mly113I	GGCGCC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	409
MroI	TCCGGA	1 cut(s)	248
MseI	TTAA	1 cut(s)	80
MslI	CAYNNNNRTG	1 cut(s)	70
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	5 cut(s)	180, 249, 263, 402, 478
MspR9I	CCNGG	5 cut(s)	180, 181, 264, 328, 403
MvaI	CCWGG	1 cut(s)	328
MvnI	CGCG	4 cut(s)	242, 285, 287, 389
MwoI	GCNNNNNNNGC	2 cut(s)	81, 224
NarI	GGCGCC	1 cut(s)	506
NciI	CCSGG	4 cut(s)	180, 181, 264, 403
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	2 cut(s)	45, 132
NlaIV	GGNNCC	7 cut(s)	141, 205, 219, 253, 273, 318, 507
NmeAIII	GCCGAG	1 cut(s)	194
NmuCI	GTSAC	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	58
PfeI	GAWTC	1 cut(s)	412
PflFI	GACNNNGTC	1 cut(s)	358
PkrI	GCNGC	4 cut(s)	289, 306, 460, 505
PluTI	GGCGCC	1 cut(s)	509
Psp6I	CCWGG	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	7 cut(s)	141, 205, 219, 253, 273, 318, 507
PspPI	GGNCC	3 cut(s)	139, 251, 374
PsuI	RGATCY	1 cut(s)	316
PsyI	GACNNNGTC	1 cut(s)	358
RsaI	GTAC	2 cut(s)	167, 205
RsaNI	GTAC	2 cut(s)	166, 204
RseI	CAYNNNNRTG	1 cut(s)	70
SacII	CCGCGG	1 cut(s)	390
SalI	GTCGAC	1 cut(s)	331
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	4 cut(s)	288, 305, 459, 504
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	3 cut(s)	139, 251, 374
ScrFI	CCNGG	5 cut(s)	180, 181, 264, 328, 403
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	7 cut(s)	16, 55, 86, 205, 209, 350, 438
SfoI	GGCGCC	1 cut(s)	507
Sfr303I	CCGCGG	1 cut(s)	390
SgrBI	CCGCGG	1 cut(s)	390
SinI	GGWCC	3 cut(s)	139, 251, 374
SmaI	CCCGGG	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	70
Sse9I	AATT	2 cut(s)	133, 277
SspDI	GGCGCC	1 cut(s)	505
StyD4I	CCNGG	5 cut(s)	178, 179, 262, 326, 401
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	2 cut(s)	159, 332
TaqII	GACCGA	1 cut(s)	391
TasI	AATT	2 cut(s)	133, 277
TauI	GCSGC	4 cut(s)	290, 307, 461, 506
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TseFI	GTSAC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	58, 145
TspMI	CCCGGG	1 cut(s)	179
Tth111I	GACNNNGTC	1 cut(s)	358
VpaK11BI	GGWCC	3 cut(s)	139, 251, 374
XapI	RAATTY	1 cut(s)	133
XmaI	CCCGGG	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	332
ZraI	GACGTC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.