Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004363

Physical Location & Seq

Genomic Coordinates Reverse (-)

26301438 .. 26303514

Gene Structure 2077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65740.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTTTACACTAGAATGGTCAACAAGTTCAAGATTGAAGGATGTAATGCACCAATTCCAAAAGCATTTGGACTATCTTCAAGAATTTTGGTCTGTCTTGGACAATATCGATAAATCTCTATGTGTTGTTGATGTCAAGCAACCAGCTCGTGCCTCTGCTATTCGCCGGATTGATGCTGGGAATGATTGTATCATCATTGTTCATATCGACTTCAAAGACCCTAAATCCCTACCAGAGTCCCGGTTTATTGGTCCTGTGCCTTCAGCTACGCATATGAACAACTTGCATATGTTATGGAGAAGAAATTGCAAAAGATGGTCAAATGAAAGATCATTTCCTGAGAACCTTGAATGTATTCTAGGTACTGAGCTTCCAAAGCCTCTAGGTCTCCAAGTGGAAGACGATCAACAACAAGTTGAATGTGGGATTTGCTATGCGCAGTTTCTACCCACCGATGAGGAGCTCGGAGCTAGAAGTGGGACACGAACAGATTACACATGTGAAAACATCAGTTGCAACAAGTCTTTCCATAGCCTCTGCCTCACAGACTGGTTAAGGTCTATCACAACAACAAGACAGTCATTTGATGTTCTGTTTGGGAACTGCCCTTATTGTTCAGACCCAGTTGCAGTCAAAACCAGCAACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04120 map03460 map04120

Pfam Domains

Protein Families

FANCL_C WD-3

Protein Analysis

216

Amino Acids

24.8

Weight (kDa)

5.87

Isoelectric Point (pI)

67.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FANCL_d2	PF18890	2 - 60	6.5e-12	FANCL UBC-like domain 2
FANCL_d3	PF18891	63 - 162	1e-16	FANCL UBC-like domain 3
FANCL_C	PF11793	172 - 249	2.3e-33	FANCL C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740
fragaria_vesca	FvH4_1g18540 FvH4_1g18540 FvH4_1g18540
malus_domestica	MD02G1192700.v1.1 MD15G1303200.v1.1
prunus_persica	Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1
pyrus_communis	pycom02g15670
rosa_chinensis	RchiOBHm_Chr2g0109231
rosa_laevigata	RLG00000017727
rosa_multiflora	Rmu_sc0001807.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134380
rosa_rugosa	Rorug02G0158700.1 Rorug07G0270600
rosa_samantha	Rh2AG210100 Rh2AG412800 Rh2BG220500 Rh2CG212500 Rh2DG216300 Rh7BG235400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	438
AcsI	RAATTY	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	364
AflIII	ACRYGT	1 cut(s)	497
AgsI	TTSAA	6 cut(s)	30, 37, 80, 214, 350, 419
AluBI	AGCT	5 cut(s)	146, 266, 370, 463, 470
AluI	AGCT	5 cut(s)	146, 266, 370, 463, 470
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	1 cut(s)	392
ApoI	RAATTY	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	1 cut(s)	251
AsuC2I	CCSGG	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	251
BanII	GRGCYC	1 cut(s)	465
BauI	CACGAG	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	465
BccI	CCATC	1 cut(s)	309
BcgI	CGANNNNNNTGC	2 cut(s)	128, 162
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	392
BfaI	CTAG	4 cut(s)	11, 359, 383, 471
Bme1390I	CCNGG	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	241
BmrI	ACTGGG	1 cut(s)	617
BmsI	GCATC	1 cut(s)	163
BmuI	ACTGGG	1 cut(s)	617
BpiI	GAAGAC	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	241
Bsa29I	ATCGAT	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	392
Bse1I	ACTGG	2 cut(s)	554, 623
BseCI	ATCGAT	1 cut(s)	108
BseGI	GGATG	1 cut(s)	46
BseMII	CTCAG	2 cut(s)	330, 357
BseNI	ACTGG	2 cut(s)	554, 623
BseRI	GAGGAG	1 cut(s)	473
BseYI	CCCAGC	1 cut(s)	176
BshVI	ATCGAT	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	166, 241
BslFI	GGGAC	2 cut(s)	223, 493
BsmAI	GTCTC	1 cut(s)	392
BsmFI	GGGAC	2 cut(s)	223, 493
Bso31I	GGTCTC	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	2 cut(s)	329, 403
BspCNI	CTCAG	2 cut(s)	331, 358
BspDI	ATCGAT	1 cut(s)	108
BspTNI	GGTCTC	1 cut(s)	392
BsrI	ACTGG	2 cut(s)	554, 623
BssMI	GATC	2 cut(s)	329, 403
BssSI	CACGAG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	579
BstDEI	CTNAG	2 cut(s)	339, 366
BstF5I	GGATG	1 cut(s)	46
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	2 cut(s)	332, 406
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	2 cut(s)	329, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	239
BstV2I	GAAGAC	1 cut(s)	405
Bsu15I	ATCGAT	1 cut(s)	108
BsuTUI	ATCGAT	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	46
CfoI	GCGC	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	251
ClaI	ATCGAT	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	363
CviAII	CATG	1 cut(s)	498
CviJI	RGCY	7 cut(s)	146, 266, 370, 379, 463, 470, 534
CviKI_1	RGCY	7 cut(s)	146, 266, 370, 379, 463, 470, 534
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	2 cut(s)	339, 366
DpnI	GATC	2 cut(s)	331, 405
DpnII	GATC	2 cut(s)	329, 403
Ecl136II	GAGCTC	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	465
FaeI	CATG	1 cut(s)	501
FaqI	GGGAC	2 cut(s)	223, 493
FatI	CATG	1 cut(s)	497
FauNDI	CATATG	2 cut(s)	273, 288
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	465
FspBI	CTAG	4 cut(s)	11, 359, 383, 471
FspI	TGCGCA	1 cut(s)	438
GlaI	GCGC	1 cut(s)	438
GsaI	CCCAGC	1 cut(s)	180
HapII	CCGG	2 cut(s)	166, 241
HhaI	GCGC	1 cut(s)	439
Hin1II	CATG	1 cut(s)	501
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	2 cut(s)	166, 241
Hpy166II	GTNNAC	2 cut(s)	6, 21
Hpy188I	TCNGA	2 cut(s)	467, 619
Hpy188III	TCNNGA	3 cut(s)	30, 80, 338
Hpy8I	GTNNAC	2 cut(s)	6, 21
HpyAV	CCTTC	2 cut(s)	31, 270
HpyCH4III	ACNGT	1 cut(s)	579
HpyCH4V	TGCA	5 cut(s)	49, 286, 309, 516, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	2 cut(s)	339, 366
Hsp92II	CATG	1 cut(s)	501
HspAI	GCGC	1 cut(s)	437
Kzo9I	GATC	2 cut(s)	329, 403
LmnI	GCTCC	2 cut(s)	460, 467
LpnPI	CCDG	9 cut(s)	156, 162, 179, 246, 254, 267, 351, 535, 636
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	4 cut(s)	11, 359, 383, 471
MalI	GATC	2 cut(s)	331, 405
MboI	GATC	2 cut(s)	329, 403
MboII	GAAGA	3 cut(s)	68, 312, 410
MhlI	GDGCHC	1 cut(s)	465
MluCI	AATT	3 cut(s)	53, 83, 304
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	5 cut(s)	163, 390, 451, 545, 551
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	1 cut(s)	554
MslI	CAYNNNNRTG	1 cut(s)	13
MspI	CCGG	2 cut(s)	166, 241
MspR9I	CCNGG	1 cut(s)	241
MwoI	GCNNNNNNNGC	1 cut(s)	376
NciI	CCSGG	1 cut(s)	241
NdeI	CATATG	2 cut(s)	273, 288
NdeII	GATC	2 cut(s)	329, 403
NlaIII	CATG	1 cut(s)	501
NsbI	TGCGCA	1 cut(s)	438
NspI	RCATGY	1 cut(s)	501
PciI	ACATGT	1 cut(s)	497
PdmI	GAANNNNTTC	1 cut(s)	354
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PscI	ACATGT	1 cut(s)	497
Psp124BI	GAGCTC	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	251
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
RseI	CAYNNNNRTG	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	465
SaqAI	TTAA	1 cut(s)	554
Sau3AI	GATC	2 cut(s)	329, 403
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	241
SduI	GDGCHC	1 cut(s)	465
SetI	ASST	9 cut(s)	148, 268, 348, 364, 372, 388, 465, 472, 560
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	13
Sse9I	AATT	3 cut(s)	53, 83, 304
SspMI	CTAG	4 cut(s)	11, 359, 383, 471
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	239
TaaI	ACNGT	1 cut(s)	579
TaqI	TCGA	2 cut(s)	108, 207
TasI	AATT	3 cut(s)	53, 83, 304
Tru1I	TTAA	1 cut(s)	554
Tru9I	TTAA	1 cut(s)	554
TspDTI	ATGAA	3 cut(s)	191, 290, 339
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	1 cut(s)	83
XceI	RCATGY	1 cut(s)	501
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	4 cut(s)	11, 359, 383, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.