MD15G1303200.v1.1

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0004363
Physical Location & Seq
Forward (+)
29453739 .. 29455263
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1303200.v1.1.491

Sequence Viewer

Length: 339 bp
ATGAATTATCTACTTGAATGTCTTCTGGAGACTCAACTGCCAACGCCCCCTGATGTCGAGAAGAATGACCAGATGGTTGAATGTGGAATTTGTTATGCTCAGAGTCTTCCCATCGGTAAGTCTATTTCTAATGTTGATGATGAGCTTAGAGATAAGAGTGGAACTGGAACTGACTATGCATTCGATAATACCCGCTGCAACAAGGCTTTCCACAGCATATGTCTTGTGGACTGGTTGCGCTCTATCACCACACGAAGGCAGTCATTTGATGTCTTATTTGGAAGCTGTCCATACTGTTCAGAACCAGTTGCGGTGAAAATCAACAGCGTTAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04120 map03460 map04120
Pfam Domains
Protein Families
FANCL_C WD-3

Protein Analysis

113

Amino Acids

12.59

Weight (kDa)

5.04

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FANCL_C PF11793 25 - 107 7.4e-29 FANCL C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 193, 311
AcsI RAATTY 1 cut(s) 87
AfiI CCNNNNNNNGG 1 cut(s) 255
AgsI TTSAA 2 cut(s) 17, 80
AluBI AGCT 2 cut(s) 145, 285
AluI AGCT 2 cut(s) 145, 285
Alw26I GTCTC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 195
ApoI RAATTY 1 cut(s) 87
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
Asp700I GAANNNNTTC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 240
AsuHPI GGTGA 2 cut(s) 238, 325
BbsI GAAGAC 2 cut(s) 14, 98
BbvI GCAGC 1 cut(s) 182
BccI CCATC 2 cut(s) 67, 119
BcoDI GTCTC 1 cut(s) 23
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
BpiI GAAGAC 2 cut(s) 14, 98
BpmI CTGGAG 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 3 cut(s) 169, 236, 305
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 3 cut(s) 169, 236, 305
BseXI GCAGC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 179
BspACI CCGC 2 cut(s) 193, 311
BspCNI CTCAG 1 cut(s) 112
BsrI ACTGG 3 cut(s) 169, 236, 305
Bst4CI ACNGT 1 cut(s) 296
BstDEI CTNAG 2 cut(s) 99, 146
BstHHI GCGC 1 cut(s) 240
BstMAI GTCTC 1 cut(s) 23
BstV1I GCAGC 1 cut(s) 182
BstV2I GAAGAC 2 cut(s) 14, 98
CfoI GCGC 1 cut(s) 240
CviJI RGCY 3 cut(s) 145, 206, 285
CviKI_1 RGCY 3 cut(s) 145, 206, 285
DdeI CTNAG 2 cut(s) 99, 146
EcoT22I ATGCAT 1 cut(s) 181
FaiI YATR 5 cut(s) 96, 177, 218, 220, 292
FauI CCCGC 1 cut(s) 200
FauNDI CATATG 1 cut(s) 218
Fnu4HI GCNGC 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 196
GlaI GCGC 1 cut(s) 239
GluI GCNGC 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 47
HhaI GCGC 1 cut(s) 240
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HinfI GANTC 2 cut(s) 31, 103
HphI GGTGA 2 cut(s) 238, 325
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 2 cut(s) 102, 301
Hpy188III TCNNGA 2 cut(s) 26, 58
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 249
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4V TGCA 2 cut(s) 179, 198
HpyF3I CTNAG 2 cut(s) 99, 146
HspAI GCGC 1 cut(s) 238
LpnPI CCDG 6 cut(s) 11, 63, 83, 150, 217, 318
Lsp1109I GCAGC 1 cut(s) 182
MboII GAAGA 3 cut(s) 14, 73, 98
MluCI AATT 2 cut(s) 4, 87
MlyI GAGTC 2 cut(s) 25, 112
Mph1103I ATGCAT 1 cut(s) 181
MroXI GAANNNNTTC 1 cut(s) 21
MseI TTAA 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 179
NdeI CATATG 1 cut(s) 218
NsiI ATGCAT 1 cut(s) 181
PctI GAATGC 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 21
PkrI GCNGC 1 cut(s) 197
PleI GAGTC 2 cut(s) 25, 111
PpsI GAGTC 2 cut(s) 25, 111
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 1 cut(s) 196
SchI GAGTC 2 cut(s) 25, 112
SetI ASST 2 cut(s) 147, 287
Sse9I AATT 2 cut(s) 4, 87
SsiI CCGC 2 cut(s) 193, 311
TaaI ACNGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 57, 183
TasI AATT 2 cut(s) 4, 87
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseI GCWGC 1 cut(s) 195
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 21
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.