Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004363

Physical Location & Seq

Genomic Coordinates Reverse (-)

22141399 .. 22148086

Gene Structure 6688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G213700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGTACTTCTTCTTCTGCTGTATTTCGCTTTTGGTTGCTGGTTGTATCTGCAAGTAAAGATAAAGATAAAGCGCACCAACTGTTTGCTAACATTCCCCCATGTTTGTGAATGTGCTGAGCAGAGGAGATGCAGAGAGATGGCCGAAGCGTCTACCTTTTACCGTGCAGTGTACTCAGAGATAGAGGAGGTTGGATGGGAGCATCTGGTGAGGTTCGGTGGAGATCTAACATCTCTCAGCTTTCGGATCTTAGATGGCAAGGGGAGAATGCGTATTATTGAGATTCAATTGGATAAAACCCATCCTAAATGCCCTCCTTCAATTTCAGCAGATGTACCATATATGTTTGATTTAAAATGGTCAACACACTCAAGATTGAAAGATGTGGTGCAGCAGTTTAAAAAGCATCTGGAGAAGCTTCAGGCATTTTGGTCTACTTTGGATGATATTGACAGGTCCCTTTGGGTTGTTGATCCTAAACAAGCATCTCCTGCTGTATCCTATCGCCAGATCAATATGGGAAATGATTGCTTCATTGTGTTGTCTATTAATGCCTTTGATCCTAGATCTTTACCAGAATGTCGTTTTATTGGTTCAGGTCCAATTGTGAACTTGTTGAGAAATAGATGGCGAAGAAATAGCAAAAGATGGATAAAAGACAAACAATTTCTAGAAAATCTTAAATGTCTTTTGGAGACTCAACTGCCAATTCCCCCTGATGTCCAGAAGAATGAGCAGCAAGTTGAATGCGGAATTTGTTATGCTCAGAGTCTTCCAATTGATGAAGAGCTCAGACATAAGAGTGGAACTGGGACTGACTATACATGCGACAATACCAGTTGCAAAAGGGCTTTCCATAGCATATGTCTTGTGGACTGGTTGCGTTCTATCACCACAACAAGGCAGTCATTTGATGTTCTATTTGGAAGTTGTCCATACTGCTCAGAACCAGTTGCGGTGAAAATTGACAGCATGAAGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04120 map03460 map04120

Pfam Domains

Protein Families

FANCL_C WD-3

Protein Analysis

328

Amino Acids

37.95

Weight (kDa)

8.63

Isoelectric Point (pI)

59.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740
fragaria_vesca	FvH4_1g18540 FvH4_1g18540 FvH4_1g18540
malus_domestica	MD02G1192700.v1.1 MD15G1303200.v1.1
prunus_persica	Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1
pyrus_communis	pycom02g15670
rosa_chinensis	RchiOBHm_Chr2g0109231
rosa_laevigata	RLG00000017727
rosa_multiflora	Rmu_sc0001807.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134380
rosa_rugosa	Rorug02G0158700.1 Rorug07G0270600
rosa_samantha	Rh2AG210100 Rh2AG412800 Rh2BG220500 Rh2CG212500 Rh2DG216300 Rh7BG235400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	152, 434
AciI	CCGC	2 cut(s)	750, 956
AclWI	GGATC	3 cut(s)	254, 467, 554
AcoI	YGGCCR	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	753
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	3 cut(s)	6, 173, 336
AfiI	CCNNNNNNNGG	1 cut(s)	900
AgsI	TTSAA	4 cut(s)	287, 321, 379, 746
AluBI	AGCT	3 cut(s)	240, 418, 790
AluI	AGCT	3 cut(s)	240, 418, 790
Alw21I	GWGCWC	1 cut(s)	792
Alw26I	GTCTC	1 cut(s)	689
AlwI	GGATC	3 cut(s)	254, 467, 554
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	391, 736
ApoI	RAATTY	1 cut(s)	753
AseI	ATTAAT	1 cut(s)	549
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	456, 599
AsuHPI	GGTGA	3 cut(s)	220, 883, 970
AvaII	GGWCC	2 cut(s)	456, 599
BanII	GRGCYC	1 cut(s)	792
BarI	GAAGNNNNNNTAC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	764
Bbv12I	GWGCWC	1 cut(s)	792
BbvI	GCAGC	2 cut(s)	403, 748
BccI	CCATC	6 cut(s)	133, 189, 248, 309, 621, 642
BciVI	GTATCC	1 cut(s)	508
BcoDI	GTCTC	1 cut(s)	689
BfaI	CTAG	2 cut(s)	564, 671
BfuI	GTATCC	1 cut(s)	508
BglII	AGATCT	2 cut(s)	223, 566
BisI	GCNGC	2 cut(s)	392, 737
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	2 cut(s)	393, 738
Bme18I	GGWCC	2 cut(s)	456, 599
BmgT120I	GGNCC	2 cut(s)	456, 599
BmiI	GGNNCC	1 cut(s)	458
BmrI	ACTGGG	1 cut(s)	819
BmsI	GCATC	4 cut(s)	119, 211, 415, 494
BmuI	ACTGGG	1 cut(s)	819
BpiI	GAAGAC	1 cut(s)	764
BpmI	CTGGAG	1 cut(s)	431
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	900
Bse1I	ACTGG	4 cut(s)	814, 837, 881, 950
BseGI	GGATG	3 cut(s)	200, 301, 448
BseLI	CCNNNNNNNGG	1 cut(s)	900
BseMII	CTCAG	6 cut(s)	108, 189, 250, 779, 805, 957
BseNI	ACTGG	4 cut(s)	814, 837, 881, 950
BseRI	GAGGAG	2 cut(s)	139, 200
BseXI	GCAGC	2 cut(s)	403, 748
BsgI	GTGCAG	2 cut(s)	186, 410
BshFI	GGCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	792
BslFI	GGGAC	2 cut(s)	442, 826
BslI	CCNNNNNNNGG	1 cut(s)	900
BsmAI	GTCTC	1 cut(s)	689
BsmFI	GGGAC	2 cut(s)	442, 826
BsmI	GAATGC	2 cut(s)	273, 752
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	792
Bsp143I	GATC	6 cut(s)	223, 246, 472, 510, 559, 566
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	2 cut(s)	750, 956
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	6 cut(s)	109, 188, 249, 778, 804, 956
BspLI	GGNNCC	1 cut(s)	458
BspPI	GGATC	3 cut(s)	254, 467, 554
BspQI	GCTCTTC	1 cut(s)	780
BsrI	ACTGG	4 cut(s)	814, 837, 881, 950
BssMI	GATC	6 cut(s)	223, 246, 472, 510, 559, 566
Bst4CI	ACNGT	2 cut(s)	83, 164
Bst6I	CTCTTC	1 cut(s)	780
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstDEI	CTNAG	7 cut(s)	117, 175, 236, 250, 765, 791, 943
BstF5I	GGATG	3 cut(s)	200, 301, 448
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	6 cut(s)	226, 249, 475, 513, 562, 569
BstMAI	GTCTC	1 cut(s)	689
BstMBI	GATC	6 cut(s)	223, 246, 472, 510, 559, 566
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstNSI	RCATGY	1 cut(s)	828
BstV1I	GCAGC	2 cut(s)	403, 748
BstV2I	GAAGAC	1 cut(s)	764
BstX2I	RGATCY	3 cut(s)	223, 246, 566
BstYI	RGATCY	3 cut(s)	223, 246, 566
BsuI	GTATCC	1 cut(s)	508
BsuRI	GGCC	1 cut(s)	143
BtsCI	GGATG	3 cut(s)	200, 301, 448
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	174
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	456, 599
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	3 cut(s)	5, 172, 335
CviAII	CATG	3 cut(s)	101, 825, 973
CviJI	RGCY	5 cut(s)	143, 240, 418, 790, 851
CviKI_1	RGCY	5 cut(s)	143, 240, 418, 790, 851
CviQI	GTAC	3 cut(s)	5, 172, 335
DdeI	CTNAG	7 cut(s)	117, 175, 236, 250, 765, 791, 943
DpnI	GATC	6 cut(s)	225, 248, 474, 512, 561, 568
DpnII	GATC	6 cut(s)	223, 246, 472, 510, 559, 566
DraI	TTTAAA	2 cut(s)	354, 400
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	780
Ecl136II	GAGCTC	1 cut(s)	790
Eco24I	GRGCYC	1 cut(s)	792
Eco47I	GGWCC	2 cut(s)	456, 599
Eco53kI	GAGCTC	1 cut(s)	790
Eco57I	CTGAAG	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	790
EcoO109I	RGGNCCY	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	792
FaeI	CATG	3 cut(s)	104, 828, 976
FaqI	GGGAC	2 cut(s)	442, 826
FatI	CATG	3 cut(s)	100, 824, 972
FauNDI	CATATG	1 cut(s)	863
FblI	GTMKAC	2 cut(s)	152, 434
Fnu4HI	GCNGC	2 cut(s)	392, 737
FokI	GGATG	3 cut(s)	207, 288, 455
FriOI	GRGCYC	1 cut(s)	792
Fsp4HI	GCNGC	2 cut(s)	392, 737
FspBI	CTAG	2 cut(s)	564, 671
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	2 cut(s)	392, 737
GsuI	CTGGAG	1 cut(s)	431
HaeIII	GGCC	1 cut(s)	143
HgaI	GACGC	1 cut(s)	138
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	3 cut(s)	104, 828, 976
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	3 cut(s)	283, 697, 769
HphI	GGTGA	3 cut(s)	220, 883, 970
Hpy166II	GTNNAC	6 cut(s)	153, 172, 363, 435, 610, 874
Hpy188I	TCNGA	5 cut(s)	178, 246, 768, 794, 946
Hpy188III	TCNNGA	4 cut(s)	372, 410, 671, 724
Hpy8I	GTNNAC	6 cut(s)	153, 172, 363, 435, 610, 874
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	2 cut(s)	83, 164
HpyCH4V	TGCA	5 cut(s)	52, 132, 167, 391, 843
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	7 cut(s)	117, 175, 236, 250, 765, 791, 943
Hsp92II	CATG	3 cut(s)	104, 828, 976
HspAI	GCGC	1 cut(s)	73
Kzo9I	GATC	6 cut(s)	223, 246, 472, 510, 559, 566
LguI	GCTCTTC	1 cut(s)	780
LmnI	GCTCC	1 cut(s)	199
Lsp1109I	GCAGC	2 cut(s)	403, 748
LweI	GCATC	4 cut(s)	119, 211, 415, 494
MaeI	CTAG	2 cut(s)	564, 671
MalI	GATC	6 cut(s)	225, 248, 474, 512, 561, 568
MboI	GATC	6 cut(s)	223, 246, 472, 510, 559, 566
MboII	GAAGA	5 cut(s)	5, 645, 739, 764, 797
MfeI	CAATTG	3 cut(s)	287, 603, 777
MflI	RGATCY	3 cut(s)	223, 246, 566
MhlI	GDGCHC	1 cut(s)	792
MluCI	AATT	8 cut(s)	287, 321, 603, 665, 708, 753, 777, 963
MlyI	GAGTC	2 cut(s)	691, 778
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	5 cut(s)	117, 178, 181, 204, 324
MseI	TTAA	4 cut(s)	353, 399, 549, 681
MslI	CAYNNNNRTG	2 cut(s)	105, 801
MunI	CAATTG	3 cut(s)	287, 603, 777
Mva1269I	GAATGC	2 cut(s)	273, 752
MwoI	GCNNNNNNNGC	1 cut(s)	491
NdeI	CATATG	1 cut(s)	863
NdeII	GATC	6 cut(s)	223, 246, 472, 510, 559, 566
NlaIII	CATG	3 cut(s)	104, 828, 976
NlaIV	GGNNCC	1 cut(s)	458
NspI	RCATGY	1 cut(s)	828
PciSI	GCTCTTC	1 cut(s)	780
PctI	GAATGC	2 cut(s)	273, 752
PfeI	GAWTC	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	393, 738
PleI	GAGTC	2 cut(s)	691, 777
PpsI	GAGTC	2 cut(s)	691, 777
PpuMI	RGGWCCY	1 cut(s)	456
PshBI	ATTAAT	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	792
Psp5II	RGGWCCY	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	458
PspPI	GGNCC	2 cut(s)	456, 599
PspPPI	RGGWCCY	1 cut(s)	456
PsuI	RGATCY	3 cut(s)	223, 246, 566
RsaI	GTAC	3 cut(s)	6, 173, 336
RsaNI	GTAC	3 cut(s)	5, 172, 335
RseI	CAYNNNNRTG	2 cut(s)	105, 801
SacI	GAGCTC	1 cut(s)	792
SapI	GCTCTTC	1 cut(s)	780
SaqAI	TTAA	4 cut(s)	353, 399, 549, 681
SatI	GCNGC	2 cut(s)	392, 737
Sau3AI	GATC	6 cut(s)	223, 246, 472, 510, 559, 566
Sau96I	GGNCC	2 cut(s)	456, 599
SchI	GAGTC	2 cut(s)	691, 778
SduI	GDGCHC	1 cut(s)	792
SetI	ASST	8 cut(s)	158, 192, 215, 242, 420, 458, 601, 792
SfaNI	GCATC	4 cut(s)	119, 211, 415, 494
SinI	GGWCC	2 cut(s)	456, 599
SmiMI	CAYNNNNRTG	2 cut(s)	105, 801
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	8 cut(s)	287, 321, 603, 665, 708, 753, 777, 963
SsiI	CCGC	2 cut(s)	750, 956
SspMI	CTAG	2 cut(s)	564, 671
SstI	GAGCTC	1 cut(s)	792
TaaI	ACNGT	2 cut(s)	83, 164
TasI	AATT	8 cut(s)	287, 321, 603, 665, 708, 753, 777, 963
TatI	WGTACW	1 cut(s)	171
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	4 cut(s)	353, 399, 549, 681
Tru9I	TTAA	4 cut(s)	353, 399, 549, 681
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	2 cut(s)	391, 736
TspDTI	ATGAA	2 cut(s)	523, 798
TspRI	CASTG	1 cut(s)	174
VpaK11BI	GGWCC	2 cut(s)	456, 599
VspI	ATTAAT	1 cut(s)	549
XapI	RAATTY	1 cut(s)	753
XbaI	TCTAGA	1 cut(s)	670
XceI	RCATGY	1 cut(s)	828
XmiI	GTMKAC	2 cut(s)	152, 434
XspI	CTAG	2 cut(s)	564, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.