Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004363

Physical Location & Seq

Genomic Coordinates Reverse (-)

18229987 .. 18234669

Gene Structure 4683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1192700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTCCGGTATAATATGGATGCTGTACTTTATTTGTACACGGGAATGTGCTGAGGAGAGAAGCAGAGAGCTAGGCCAAGCGTCTACCTTTTACCGTGCAGTGTACTCAGAGATAGAGGAAGTTGGATGGGAGAATTTAGCAAGGTTTAGTGGAGATCTAACATCTCTCAGCTTTCGGATAATAGATGGCAAGGGCAGAGTGCATTTTATGGAAATTCAGTTGGATAAATCACATCCCAACTGTCCTCCTTCACTTTCAGCAGATGTGCCATATTTGTTTAATTTAAAATGGTCATCAAACTCAAGAATGAAAGATGTGGTGCGGCAGTTTAAAAAGCATCTGGAGAACCTTCAGGCTTTTTGGTCTACTTTGGATGATATTGACAGGTCGCTTTGGGTTGTTGATCCTAAACAAGCATCTCCTGCTGTGTCATATCGCCAAATTATTATAGGAAATGATTGCTGCATCACATTGTTCATTAATTCCGTTGATCCTAGATCATTACCAGAATGTCGTTTTATTGGTTCAGGTCCATTCGTGAATACGTTGAGAAACAAATGGCGAAGAAATAGCAAAAGATGGATAAAAGACAAACCATTTCTGGAAAATCTTGAATGTCTTCTGGAGACTCAACTGCCAATGCCCCCTGATGTCGAGAAGAATGACCAGCAAGTTGAATGTGGAATTTGTTATGCTCAGAGTCTACCAATTGATGACGAGCTCAGAGATAAGAGTGGAACCGGGACTGACTATACATGTGATAATACCAGTTGCAACAAGGCTTTCCACAGCATATGTCTTGTGGACTGGTTGCGTTCTATCACCACAACACGGCAGTCATTTGATGTGTTATTTGGAAGCTGTCCATACTGTTCAGAACCAGTTGCGGTGAAAATCAACAGCGTCAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04120 map03460 map04120

Pfam Domains

Protein Families

FANCL_C WD-3

Protein Analysis

305

Amino Acids

34.96

Weight (kDa)

6.15

Isoelectric Point (pI)

59.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FANCL_d2	PF18890	29 - 117	2.8e-17	FANCL UBC-like domain 2
FANCL_d3	PF18891	120 - 215	5.2e-22	FANCL UBC-like domain 3
FANCL_C	PF11793	223 - 299	4.8e-31	FANCL C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740
fragaria_vesca	FvH4_1g18540 FvH4_1g18540 FvH4_1g18540
malus_domestica	MD02G1192700.v1.1 MD15G1303200.v1.1
prunus_persica	Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1
pyrus_communis	pycom02g15670
rosa_chinensis	RchiOBHm_Chr2g0109231
rosa_laevigata	RLG00000017727
rosa_multiflora	Rmu_sc0001807.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134380
rosa_rugosa	Rorug02G0158700.1 Rorug07G0270600
rosa_samantha	Rh2AG210100 Rh2AG412800 Rh2BG220500 Rh2CG212500 Rh2DG216300 Rh7BG235400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	83, 365, 703
AciI	CCGC	2 cut(s)	322, 887
AclWI	GGATC	2 cut(s)	398, 485
AcsI	RAATTY	3 cut(s)	133, 213, 684
AcuI	CTGAAG	1 cut(s)	335
AfaI	GTAC	3 cut(s)	26, 37, 104
AfiI	CCNNNNNNNGG	1 cut(s)	831
AflIII	ACRYGT	1 cut(s)	755
AgsI	TTSAA	2 cut(s)	614, 677
AluBI	AGCT	4 cut(s)	70, 171, 721, 861
AluI	AGCT	4 cut(s)	70, 171, 721, 861
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	1 cut(s)	620
AlwI	GGATC	2 cut(s)	398, 485
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	1 cut(s)	462
ApoI	RAATTY	3 cut(s)	133, 213, 684
AseI	ATTAAT	1 cut(s)	480
Asp700I	GAANNNNTTC	1 cut(s)	618
AspS9I	GGNCC	1 cut(s)	530
AsuC2I	CCSGG	1 cut(s)	742
AsuHPI	GGTGA	2 cut(s)	814, 901
AvaII	GGWCC	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	723
BbsI	GAAGAC	1 cut(s)	611
Bbv12I	GWGCWC	1 cut(s)	723
BbvCI	CCTCAGC	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	449
BccI	CCATC	3 cut(s)	120, 179, 573
BceAI	ACGGC	1 cut(s)	848
BcnI	CCSGG	1 cut(s)	742
BcoDI	GTCTC	1 cut(s)	620
BfaI	CTAG	2 cut(s)	71, 495
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	2 cut(s)	323, 463
BlsI	GCNGC	2 cut(s)	324, 464
Bme1390I	CCNGG	1 cut(s)	742
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	530
BmiI	GGNNCC	1 cut(s)	739
BmrFI	CCNGG	1 cut(s)	742
BmsI	GCATC	4 cut(s)	9, 346, 425, 474
BpiI	GAAGAC	1 cut(s)	611
BpmI	CTGGAG	2 cut(s)	362, 644
Bpu10I	CCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	742
BsaWI	WCCGGW	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	831
Bse1I	ACTGG	3 cut(s)	768, 812, 881
BseGI	GGATG	4 cut(s)	24, 131, 232, 379
BseLI	CCNNNNNNNGG	1 cut(s)	831
BseMII	CTCAG	5 cut(s)	42, 120, 181, 710, 736
BseNI	ACTGG	3 cut(s)	768, 812, 881
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	449
BsgI	GTGCAG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	723
BsiSI	CCGG	2 cut(s)	6, 741
BslFI	GGGAC	1 cut(s)	757
BslI	CCNNNNNNNGG	1 cut(s)	831
BsmAI	GTCTC	1 cut(s)	620
BsmFI	GGGAC	1 cut(s)	757
BsnI	GGCC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	723
Bsp1407I	TGTACA	1 cut(s)	35
Bsp143I	GATC	4 cut(s)	154, 403, 490, 497
BspACI	CCGC	2 cut(s)	322, 887
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	5 cut(s)	43, 119, 180, 709, 735
BspLI	GGNNCC	1 cut(s)	739
BspPI	GGATC	2 cut(s)	398, 485
BsrGI	TGTACA	1 cut(s)	35
BsrI	ACTGG	3 cut(s)	768, 812, 881
BssMI	GATC	4 cut(s)	154, 403, 490, 497
Bst4CI	ACNGT	3 cut(s)	95, 242, 872
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstAUI	TGTACA	1 cut(s)	35
BstDEI	CTNAG	5 cut(s)	51, 106, 167, 696, 722
BstF5I	GGATG	4 cut(s)	24, 131, 232, 379
BstKTI	GATC	4 cut(s)	157, 406, 493, 500
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	4 cut(s)	154, 403, 490, 497
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstNSI	RCATGY	1 cut(s)	759
BstSCI	CCNGG	1 cut(s)	740
BstV1I	GCAGC	1 cut(s)	449
BstV2I	GAAGAC	1 cut(s)	611
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	75
BtsCI	GGATG	4 cut(s)	24, 131, 232, 379
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	530
CseI	GACGC	2 cut(s)	69, 892
Csp6I	GTAC	3 cut(s)	25, 36, 103
CviAII	CATG	1 cut(s)	756
CviJI	RGCY	7 cut(s)	70, 75, 171, 356, 721, 782, 861
CviKI_1	RGCY	7 cut(s)	70, 75, 171, 356, 721, 782, 861
CviQI	GTAC	3 cut(s)	25, 36, 103
DdeI	CTNAG	5 cut(s)	51, 106, 167, 696, 722
DpnI	GATC	4 cut(s)	156, 405, 492, 499
DpnII	GATC	4 cut(s)	154, 403, 490, 497
DraI	TTTAAA	2 cut(s)	285, 331
Ecl136II	GAGCTC	1 cut(s)	721
Eco24I	GRGCYC	1 cut(s)	723
Eco47I	GGWCC	1 cut(s)	530
Eco53kI	GAGCTC	1 cut(s)	721
Eco57I	CTGAAG	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	721
EcoT38I	GRGCYC	1 cut(s)	723
FaeI	CATG	1 cut(s)	759
FaqI	GGGAC	1 cut(s)	757
FatI	CATG	1 cut(s)	755
FauNDI	CATATG	1 cut(s)	794
FblI	GTMKAC	3 cut(s)	83, 365, 703
Fnu4HI	GCNGC	2 cut(s)	323, 463
FokI	GGATG	4 cut(s)	31, 138, 219, 386
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	2 cut(s)	323, 463
FspBI	CTAG	2 cut(s)	71, 495
GluI	GCNGC	2 cut(s)	323, 463
GsuI	CTGGAG	2 cut(s)	362, 644
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	2 cut(s)	6, 741
HgaI	GACGC	2 cut(s)	69, 892
Hin1II	CATG	1 cut(s)	759
HinfI	GANTC	2 cut(s)	628, 700
HpaII	CCGG	2 cut(s)	6, 741
HphI	GGTGA	2 cut(s)	814, 901
Hpy166II	GTNNAC	6 cut(s)	38, 84, 103, 366, 704, 805
Hpy188I	TCNGA	5 cut(s)	109, 177, 699, 725, 877
Hpy188III	TCNNGA	8 cut(s)	303, 341, 538, 602, 611, 623, 655, 907
Hpy8I	GTNNAC	6 cut(s)	38, 84, 103, 366, 704, 805
HpyAV	CCTTC	2 cut(s)	258, 359
HpyCH4III	ACNGT	3 cut(s)	95, 242, 872
HpyCH4IV	ACGT	1 cut(s)	545
HpyCH4V	TGCA	4 cut(s)	98, 202, 465, 774
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	5 cut(s)	51, 106, 167, 696, 722
HpySE526I	ACGT	1 cut(s)	545
Hsp92II	CATG	1 cut(s)	759
Kzo9I	GATC	4 cut(s)	154, 403, 490, 497
Lsp1109I	GCAGC	1 cut(s)	449
LweI	GCATC	4 cut(s)	9, 346, 425, 474
MaeI	CTAG	2 cut(s)	71, 495
MaeII	ACGT	1 cut(s)	545
MalI	GATC	4 cut(s)	156, 405, 492, 499
MboI	GATC	4 cut(s)	154, 403, 490, 497
MboII	GAAGA	3 cut(s)	576, 611, 670
MfeI	CAATTG	1 cut(s)	708
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	723
MluCI	AATT	7 cut(s)	133, 213, 280, 441, 481, 684, 708
MlyI	GAGTC	2 cut(s)	622, 709
MmeI	TCCRAC	2 cut(s)	103, 201
MnlI	CCTC	4 cut(s)	46, 109, 255, 903
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	4 cut(s)	279, 284, 330, 480
MslI	CAYNNNNRTG	1 cut(s)	43
MspI	CCGG	2 cut(s)	6, 741
MspR9I	CCNGG	1 cut(s)	742
MunI	CAATTG	1 cut(s)	708
MwoI	GCNNNNNNNGC	1 cut(s)	422
NciI	CCSGG	1 cut(s)	742
NdeI	CATATG	1 cut(s)	794
NdeII	GATC	4 cut(s)	154, 403, 490, 497
NlaIII	CATG	1 cut(s)	759
NlaIV	GGNNCC	1 cut(s)	739
NspI	RCATGY	1 cut(s)	759
PciI	ACATGT	1 cut(s)	755
PdmI	GAANNNNTTC	1 cut(s)	618
PkrI	GCNGC	2 cut(s)	324, 464
PleI	GAGTC	2 cut(s)	622, 708
PpsI	GAGTC	2 cut(s)	622, 708
PscI	ACATGT	1 cut(s)	755
PshBI	ATTAAT	1 cut(s)	480
Psp124BI	GAGCTC	1 cut(s)	723
PspN4I	GGNNCC	1 cut(s)	739
PspPI	GGNCC	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	3 cut(s)	26, 37, 104
RsaNI	GTAC	3 cut(s)	25, 36, 103
RseI	CAYNNNNRTG	1 cut(s)	43
SacI	GAGCTC	1 cut(s)	723
SaqAI	TTAA	4 cut(s)	279, 284, 330, 480
SatI	GCNGC	2 cut(s)	323, 463
Sau3AI	GATC	4 cut(s)	154, 403, 490, 497
Sau96I	GGNCC	1 cut(s)	530
SchI	GAGTC	2 cut(s)	622, 709
ScrFI	CCNGG	1 cut(s)	742
SduI	GDGCHC	1 cut(s)	723
SfaNI	GCATC	4 cut(s)	9, 346, 425, 474
SinI	GGWCC	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	43
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	7 cut(s)	133, 213, 280, 441, 481, 684, 708
SsiI	CCGC	2 cut(s)	322, 887
SspMI	CTAG	2 cut(s)	71, 495
SstI	GAGCTC	1 cut(s)	723
StyD4I	CCNGG	1 cut(s)	740
TaaI	ACNGT	3 cut(s)	95, 242, 872
TaiI	ACGT	1 cut(s)	548
TaqI	TCGA	1 cut(s)	654
TasI	AATT	7 cut(s)	133, 213, 280, 441, 481, 684, 708
TatI	WGTACW	3 cut(s)	24, 35, 102
TauI	GCSGC	1 cut(s)	325
Tru1I	TTAA	4 cut(s)	279, 284, 330, 480
Tru9I	TTAA	4 cut(s)	279, 284, 330, 480
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	1 cut(s)	462
TspDTI	ATGAA	2 cut(s)	323, 466
TspGWI	ACGGA	1 cut(s)	475
TspRI	CASTG	1 cut(s)	105
VpaK11BI	GGWCC	1 cut(s)	530
VspI	ATTAAT	1 cut(s)	480
XapI	RAATTY	3 cut(s)	133, 213, 684
XceI	RCATGY	1 cut(s)	759
XmiI	GTMKAC	3 cut(s)	83, 365, 703
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	2 cut(s)	71, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.