Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004363

Physical Location & Seq

Genomic Coordinates Forward (+)

21320505 .. 21324629

Gene Structure 4125 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG220500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAATGTAGTGAAGAGAGTAGATGCAGAGAGCTGGCCAAAGCCTCTAACTTTTACCGTGCAGTCTACTCTGAGATAGAGGAAGTTGGGTGGGAGAATCTCGTGAGATTTGGTGGAGATCTAACATCTCTCAGCTTTCGGGTCTTAGATAGTAAGGGCAGAGTGCATGTTATGGAAATTCAGTTGGATAAAACCCATCCTACCTATCCTCCTTCAATTTCGGCAGATGTACCTTATTTGTTTAATTTAAAATGGTCATCGAACTCAAGATTGAAAGATGTGGTTCAGCAGTTTCGAAAGCATCTGGAGAAGCTTCAGACATTTTGGTCTACTTTGGATGATATTGATAGGTCCCTATGTGTTGTTGAACCTAAACAAGCATCTCCTGCTGTATCCAATCGCCAAGTCATTATAGGAAATGATTGTTTCGTCATGTTGTCTATTAATGCCACTGATCCTAGATCTTTACCAGAGTGTCGTTTTATTGGTACAGGTCAAATCGTGAACCTTTTGAGAGACAGATGGCAGAGAAATAGCAAAAGATGGGTAAAAGACAAAAAATTTCTGGTTAATCTCGAAACTCTTCTGGAGACTCAGCTTCCAAAGCCTGCAGATGTTGAGAAGAATGATCAGCAAGTGGAATGCGGAATTTGTTATGCTCCGAGTCTTCCAGTTGGTAATTCTGTAAATACTTTCCTAGATGTTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04120 map03460 map04120

Pfam Domains

Protein Families

FANCL_C WD-3

Protein Analysis

236

Amino Acids

27.09

Weight (kDa)

6.34

Isoelectric Point (pI)

49.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FANCL_d2	PF18890	17 - 105	4.2e-20	FANCL UBC-like domain 2
FANCL_d3	PF18891	108 - 203	2.6e-22	FANCL UBC-like domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740
fragaria_vesca	FvH4_1g18540 FvH4_1g18540 FvH4_1g18540
malus_domestica	MD02G1192700.v1.1 MD15G1303200.v1.1
prunus_persica	Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1
pyrus_communis	pycom02g15670
rosa_chinensis	RchiOBHm_Chr2g0109231
rosa_laevigata	RLG00000017727
rosa_multiflora	Rmu_sc0001807.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134380
rosa_rugosa	Rorug02G0158700.1 Rorug07G0270600
rosa_samantha	Rh2AG210100 Rh2AG412800 Rh2BG220500 Rh2CG212500 Rh2DG216300 Rh7BG235400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	325
AccI	GTMKAC	2 cut(s)	66, 329
AciI	CCGC	1 cut(s)	645
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	3 cut(s)	177, 560, 648
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	2 cut(s)	231, 490
AgsI	TTSAA	3 cut(s)	216, 274, 368
AluBI	AGCT	4 cut(s)	34, 135, 313, 598
AluI	AGCT	4 cut(s)	34, 135, 313, 598
Alw26I	GTCTC	2 cut(s)	510, 584
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	1 cut(s)	36
ApoI	RAATTY	3 cut(s)	177, 560, 648
AseI	ATTAAT	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	582
AspS9I	GGNCC	1 cut(s)	351
AsuII	TTCGAA	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	351
BalI	TGGCCA	1 cut(s)	38
BauI	CACGAG	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	659
BccI	CCATC	3 cut(s)	204, 516, 537
BciVI	GTATCC	1 cut(s)	403
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	2 cut(s)	510, 584
BfaI	CTAG	2 cut(s)	459, 698
BfmI	CTRYAG	1 cut(s)	609
BfuI	GTATCC	1 cut(s)	403
BglII	AGATCT	2 cut(s)	118, 461
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	353
BmsI	GCATC	3 cut(s)	14, 310, 389
BpiI	GAAGAC	1 cut(s)	659
BpmI	CTGGAG	2 cut(s)	326, 608
Bpu14I	TTCGAA	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bse1I	ACTGG	1 cut(s)	671
BseGI	GGATG	2 cut(s)	196, 343
BseMII	CTCAG	3 cut(s)	63, 145, 608
BseNI	ACTGG	1 cut(s)	671
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	337
BsmAI	GTCTC	2 cut(s)	510, 584
BsmFI	GGGAC	1 cut(s)	337
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	1 cut(s)	38
Bsp119I	TTCGAA	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	118, 454, 461, 628
BspACI	CCGC	1 cut(s)	645
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	3 cut(s)	64, 144, 607
BspLI	GGNNCC	1 cut(s)	353
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	1 cut(s)	449
BspT104I	TTCGAA	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	671
BssMI	GATC	4 cut(s)	118, 454, 461, 628
BssSI	CACGAG	1 cut(s)	101
Bst2BI	CACGAG	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	59
Bst6I	CTCTTC	2 cut(s)	9, 588
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstBI	TTCGAA	1 cut(s)	295
BstC8I	GCNNGC	2 cut(s)	36, 609
BstDEI	CTNAG	4 cut(s)	72, 131, 145, 594
BstF5I	GGATG	2 cut(s)	196, 343
BstKTI	GATC	4 cut(s)	121, 457, 464, 631
BstMAI	GTCTC	2 cut(s)	510, 584
BstMBI	GATC	4 cut(s)	118, 454, 461, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 604
BstNSI	RCATGY	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	609
BstV2I	GAAGAC	1 cut(s)	659
BstX2I	RGATCY	2 cut(s)	118, 461
BstYI	RGATCY	2 cut(s)	118, 461
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	196, 343
BtsIMutI	CAGTG	1 cut(s)	450
Cac8I	GCNNGC	2 cut(s)	36, 609
Cfr13I	GGNCC	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	230, 489
CviAII	CATG	2 cut(s)	167, 433
CviJI	RGCY	7 cut(s)	34, 38, 44, 135, 313, 598, 607
CviKI_1	RGCY	7 cut(s)	34, 38, 44, 135, 313, 598, 607
CviQI	GTAC	2 cut(s)	230, 489
DdeI	CTNAG	4 cut(s)	72, 131, 145, 594
DpnI	GATC	4 cut(s)	120, 456, 463, 630
DpnII	GATC	4 cut(s)	118, 454, 461, 628
DraI	TTTAAA	1 cut(s)	249
DrdI	GACNNNNNNGTC	1 cut(s)	325
DseDI	GACNNNNNNGTC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	9, 588
EarI	CTCTTC	2 cut(s)	9, 588
Eco47I	GGWCC	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	299
EcoO109I	RGGNCCY	1 cut(s)	351
FaeI	CATG	2 cut(s)	170, 436
FaiI	YATR	6 cut(s)	168, 173, 358, 413, 434, 657
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	2 cut(s)	166, 432
FbaI	TGATCA	1 cut(s)	628
FblI	GTMKAC	2 cut(s)	66, 329
FokI	GGATG	2 cut(s)	183, 350
FspBI	CTAG	2 cut(s)	459, 698
GsuI	CTGGAG	2 cut(s)	326, 608
HaeIII	GGCC	1 cut(s)	38
Hin1II	CATG	2 cut(s)	170, 436
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	3 cut(s)	97, 592, 664
Hpy166II	GTNNAC	4 cut(s)	67, 330, 505, 706
Hpy188I	TCNGA	3 cut(s)	73, 318, 663
Hpy188III	TCNNGA	6 cut(s)	103, 267, 305, 502, 575, 587
Hpy8I	GTNNAC	4 cut(s)	67, 330, 505, 706
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	1 cut(s)	59
HpyCH4V	TGCA	4 cut(s)	27, 62, 166, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 604
HpyF3I	CTNAG	4 cut(s)	72, 131, 145, 594
Hsp92II	CATG	2 cut(s)	170, 436
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	4 cut(s)	118, 454, 461, 628
LmnI	GCTCC	1 cut(s)	664
LpnPI	CCDG	9 cut(s)	20, 290, 399, 477, 483, 551, 572, 621, 684
LweI	GCATC	3 cut(s)	14, 310, 389
MaeI	CTAG	2 cut(s)	459, 698
MalI	GATC	4 cut(s)	120, 456, 463, 630
MboI	GATC	4 cut(s)	118, 454, 461, 628
MboII	GAAGA	4 cut(s)	26, 575, 634, 659
MflI	RGATCY	2 cut(s)	118, 461
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	6 cut(s)	177, 216, 244, 560, 648, 679
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	2 cut(s)	586, 673
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	3 cut(s)	55, 73, 219
Mox20I	TGGCCA	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	582
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	4 cut(s)	243, 248, 444, 570
Msp20I	TGGCCA	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	647
MwoI	GCNNNNNNNGC	2 cut(s)	386, 604
NdeII	GATC	4 cut(s)	118, 454, 461, 628
NlaIII	CATG	2 cut(s)	170, 436
NlaIV	GGNNCC	1 cut(s)	353
NspI	RCATGY	1 cut(s)	170
NspV	TTCGAA	1 cut(s)	295
PctI	GAATGC	1 cut(s)	647
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	1 cut(s)	97
PleI	GAGTC	2 cut(s)	586, 672
PpsI	GAGTC	2 cut(s)	586, 672
PpuMI	RGGWCCY	1 cut(s)	351
PshBI	ATTAAT	1 cut(s)	444
Psp5II	RGGWCCY	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	353
PspPI	GGNCC	1 cut(s)	351
PspPPI	RGGWCCY	1 cut(s)	351
PstI	CTGCAG	1 cut(s)	613
PsuI	RGATCY	2 cut(s)	118, 461
RsaI	GTAC	2 cut(s)	231, 490
RsaNI	GTAC	2 cut(s)	230, 489
SaqAI	TTAA	4 cut(s)	243, 248, 444, 570
Sau3AI	GATC	4 cut(s)	118, 454, 461, 628
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	2 cut(s)	586, 673
SfaNI	GCATC	3 cut(s)	14, 310, 389
SfcI	CTRYAG	1 cut(s)	609
SfuI	TTCGAA	1 cut(s)	295
SinI	GGWCC	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	6 cut(s)	177, 216, 244, 560, 648, 679
SsiI	CCGC	1 cut(s)	645
SspMI	CTAG	2 cut(s)	459, 698
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	3 cut(s)	260, 295, 576
TasI	AATT	6 cut(s)	177, 216, 244, 560, 648, 679
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	4 cut(s)	243, 248, 444, 570
Tru9I	TTAA	4 cut(s)	243, 248, 444, 570
TscAI	CASTG	1 cut(s)	457
TspRI	CASTG	1 cut(s)	457
VpaK11BI	GGWCC	1 cut(s)	351
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	3 cut(s)	177, 560, 648
XceI	RCATGY	1 cut(s)	170
XmiI	GTMKAC	2 cut(s)	66, 329
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	2 cut(s)	459, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.