Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004363

Physical Location & Seq

Genomic Coordinates Forward (+)

10892300 .. 10896435

Gene Structure 4136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAATGTAATGAACAGAGTAGATGCATAGAGCTGGCCAAAGCCTCTACCTTTTACCGTGCAGTGTATTCTGAGATAGAGGAAGTTGGGTGGGAGCATCTTGTGAGATTTAGTGCAGATCTAACATCTCTCAGCTTTCGGATCTTAGATAGTAAGGGAAGAGTGCATGTTATGGAAATTCAGTTGGACAAAACCCATCCTACCTCTCCTCCTTCAGTTTCAGCAGATGTACCTTATTTGTTTAATATAAAATGGTCATCAAACTCAAGATTAAAAGATGTGGTGCAGCAGTTTAGAAAGCATTTAGAGAGGCTTCAGACATTTTGGTCTACTTTGGATGATATTGATAGGTCCCTTCGTGTTGTTGAACATAAACAAGCATCTCCTGCTGGATCCAATCGCCAAATCAGTATAGGAAATGATTGTTTCATCATGTTGTCTATTAATGCCACTGATCCTAAATCTTTACCAGATTGTGTTAGGTGCCGTTTTATTGGTTCAGGTCAAATCGTAAACCTTTTGAGAGACAGATGGCGGAGAAATAGCAATAGATGGGGAAGAGACAAAAAATTTCTGGATAATCTCGAACGTATTCTGGAGACTCAGCTGCCAAGGCCTGTAGACGTTGAGAAGAATGATCAGGAACTGGAATGCGGAATTTGTTATGCTCACAGTCTTCCAGTTGATGATGAGCTCAGAGATAAGAGTGGAACTGGGACTGACTATACATGCGACAATACCAGCTGCAAGAGGACATTTCATAGCATATGTCTCATGGACTGGTTGTGTTCCATTACCACAACAAGACAGTCATTTAATGTTTTATTTGGAAGTTGTCCATACTGTTCAGAACCAGTTGCAGTGAAAATCAATAGTGTGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04120 map03460 map04120

Pfam Domains

Protein Families

FANCL_C WD-3

Protein Analysis

296

Amino Acids

33.91

Weight (kDa)

7.5

Isoelectric Point (pI)

53.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FANCL_d2	PF18890	17 - 105	1.8e-20	FANCL UBC-like domain 2
FANCL_d3	PF18891	108 - 206	2.1e-18	FANCL UBC-like domain 3
FANCL_C	PF11793	214 - 290	2.7e-28	FANCL C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740
fragaria_vesca	FvH4_1g18540 FvH4_1g18540 FvH4_1g18540
malus_domestica	MD02G1192700.v1.1 MD15G1303200.v1.1
prunus_persica	Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1
pyrus_communis	pycom02g15670
rosa_chinensis	RchiOBHm_Chr2g0109231
rosa_laevigata	RLG00000017727
rosa_multiflora	Rmu_sc0001807.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134380
rosa_rugosa	Rorug02G0158700.1 Rorug07G0270600
rosa_samantha	Rh2AG210100 Rh2AG412800 Rh2BG220500 Rh2CG212500 Rh2DG216300 Rh7BG235400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	325
AccB1I	GGYRCC	1 cut(s)	483
AccI	GTMKAC	2 cut(s)	329, 621
AciI	CCGC	2 cut(s)	535, 654
AclWI	GGATC	4 cut(s)	149, 387, 400, 449
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	3 cut(s)	177, 569, 657
AcuI	CTGAAG	2 cut(s)	198, 299
AfaI	GTAC	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	368
AluBI	AGCT	5 cut(s)	34, 135, 607, 694, 744
AluI	AGCT	5 cut(s)	34, 135, 607, 694, 744
Alw21I	GWGCWC	1 cut(s)	696
Alw26I	GTCTC	4 cut(s)	519, 555, 593, 776
AlwI	GGATC	4 cut(s)	149, 387, 400, 449
AlwNI	CAGNNNCTG	1 cut(s)	646
AoxI	GGCC	2 cut(s)	36, 614
ApeKI	GCWGC	3 cut(s)	286, 607, 744
ApoI	RAATTY	3 cut(s)	177, 569, 657
AseI	ATTAAT	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	591
AspS9I	GGNCC	1 cut(s)	351
AvaII	GGWCC	1 cut(s)	351
BalI	TGGCCA	1 cut(s)	38
BamHI	GGATCC	1 cut(s)	392
BanI	GGYRCC	1 cut(s)	483
BanII	GRGCYC	1 cut(s)	696
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	696
BbvI	GCAGC	3 cut(s)	298, 594, 731
BccI	CCATC	3 cut(s)	204, 525, 546
BceAI	ACGGC	1 cut(s)	471
BclI	TGATCA	1 cut(s)	637
BcoDI	GTCTC	4 cut(s)	519, 555, 593, 776
BfmI	CTRYAG	1 cut(s)	618
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	3 cut(s)	287, 608, 745
BlsI	GCNGC	3 cut(s)	288, 609, 746
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	3 cut(s)	353, 394, 485
BmrI	ACTGGG	1 cut(s)	723
BmsI	GCATC	3 cut(s)	14, 106, 389
BmuI	ACTGGG	1 cut(s)	723
BpiI	GAAGAC	1 cut(s)	668
BpmI	CTGGAG	1 cut(s)	617
BpuEI	CTTGAG	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	611
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bse1I	ACTGG	5 cut(s)	651, 680, 718, 785, 854
BseDI	CCNNGG	1 cut(s)	611
BseGI	GGATG	2 cut(s)	196, 343
BseMII	CTCAG	4 cut(s)	63, 145, 617, 709
BseNI	ACTGG	5 cut(s)	651, 680, 718, 785, 854
BseRI	GAGGAG	1 cut(s)	198
BseXI	GCAGC	3 cut(s)	298, 594, 731
BsgI	GTGCAG	3 cut(s)	81, 135, 305
BshFI	GGCC	2 cut(s)	38, 616
BshNI	GGYRCC	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	696
BslFI	GGGAC	2 cut(s)	337, 730
BsmAI	GTCTC	4 cut(s)	519, 555, 593, 776
BsmFI	GGGAC	2 cut(s)	337, 730
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	2 cut(s)	38, 616
Bsp1286I	GDGCHC	1 cut(s)	696
Bsp143I	GATC	5 cut(s)	118, 141, 392, 454, 637
BspACI	CCGC	2 cut(s)	535, 654
BspANI	GGCC	2 cut(s)	38, 616
BspCNI	CTCAG	4 cut(s)	64, 144, 616, 708
BspLI	GGNNCC	3 cut(s)	353, 394, 485
BspPI	GGATC	4 cut(s)	149, 387, 400, 449
BspT107I	GGYRCC	1 cut(s)	483
BsrI	ACTGG	5 cut(s)	651, 680, 718, 785, 854
BssECI	CCNNGG	1 cut(s)	611
BssMI	GATC	5 cut(s)	118, 141, 392, 454, 637
BssT1I	CCWWGG	1 cut(s)	611
Bst4CI	ACNGT	4 cut(s)	59, 674, 810, 845
Bst6I	CTCTTC	2 cut(s)	154, 553
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	5 cut(s)	72, 131, 145, 603, 695
BstF5I	GGATG	2 cut(s)	196, 343
BstKTI	GATC	5 cut(s)	121, 144, 395, 457, 640
BstMAI	GTCTC	4 cut(s)	519, 555, 593, 776
BstMBI	GATC	5 cut(s)	118, 141, 392, 454, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 613
BstNSI	RCATGY	2 cut(s)	170, 732
BstSFI	CTRYAG	1 cut(s)	618
BstV1I	GCAGC	3 cut(s)	298, 594, 731
BstV2I	GAAGAC	1 cut(s)	668
BstX2I	RGATCY	3 cut(s)	118, 141, 392
BstYI	RGATCY	3 cut(s)	118, 141, 392
BsuRI	GGCC	2 cut(s)	38, 616
BtsCI	GGATG	2 cut(s)	196, 343
BtsI	GCAGTG	2 cut(s)	69, 867
BtsIMutI	CAGTG	3 cut(s)	69, 450, 867
Cac8I	GCNNGC	1 cut(s)	36
CaiI	CAGNNNCTG	1 cut(s)	646
Cfr13I	GGNCC	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	4 cut(s)	167, 433, 729, 775
CviJI	RGCY	9 cut(s)	34, 38, 44, 135, 313, 607, 616, 694, 744
CviKI_1	RGCY	9 cut(s)	34, 38, 44, 135, 313, 607, 616, 694, 744
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	5 cut(s)	72, 131, 145, 603, 695
DpnI	GATC	5 cut(s)	120, 143, 394, 456, 639
DpnII	GATC	5 cut(s)	118, 141, 392, 454, 637
DrdI	GACNNNNNNGTC	1 cut(s)	325
DseDI	GACNNNNNNGTC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	154, 553
EarI	CTCTTC	2 cut(s)	154, 553
EciI	GGCGGA	1 cut(s)	550
Ecl136II	GAGCTC	1 cut(s)	694
Eco130I	CCWWGG	1 cut(s)	611
Eco147I	AGGCCT	1 cut(s)	616
Eco24I	GRGCYC	1 cut(s)	696
Eco47I	GGWCC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	694
Eco57I	CTGAAG	2 cut(s)	198, 299
EcoICRI	GAGCTC	1 cut(s)	694
EcoO109I	RGGNCCY	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	611
EcoT22I	ATGCAT	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	611
FaeI	CATG	4 cut(s)	170, 436, 732, 778
FaqI	GGGAC	2 cut(s)	337, 730
FatI	CATG	4 cut(s)	166, 432, 728, 774
FauNDI	CATATG	1 cut(s)	767
FbaI	TGATCA	1 cut(s)	637
FblI	GTMKAC	2 cut(s)	329, 621
Fnu4HI	GCNGC	3 cut(s)	287, 608, 745
FokI	GGATG	2 cut(s)	183, 350
FriOI	GRGCYC	1 cut(s)	696
Fsp4HI	GCNGC	3 cut(s)	287, 608, 745
GluI	GCNGC	3 cut(s)	287, 608, 745
GsuI	CTGGAG	1 cut(s)	617
HaeIII	GGCC	2 cut(s)	38, 616
Hin1II	CATG	4 cut(s)	170, 436, 732, 778
HinfI	GANTC	1 cut(s)	601
Hpy166II	GTNNAC	3 cut(s)	330, 514, 622
Hpy188I	TCNGA	5 cut(s)	73, 141, 318, 698, 850
Hpy188III	TCNNGA	5 cut(s)	267, 575, 584, 596, 641
Hpy8I	GTNNAC	3 cut(s)	330, 514, 622
HpyAV	CCTTC	2 cut(s)	222, 365
HpyCH4III	ACNGT	4 cut(s)	59, 674, 810, 845
HpyCH4IV	ACGT	2 cut(s)	589, 624
HpyCH4V	TGCA	7 cut(s)	27, 62, 116, 166, 286, 747, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 613
HpyF3I	CTNAG	5 cut(s)	72, 131, 145, 603, 695
HpySE526I	ACGT	2 cut(s)	589, 624
Hsp92II	CATG	4 cut(s)	170, 436, 732, 778
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	5 cut(s)	118, 141, 392, 454, 637
LmnI	GCTCC	1 cut(s)	94
Lsp1109I	GCAGC	3 cut(s)	298, 594, 731
LweI	GCATC	3 cut(s)	14, 106, 389
MaeII	ACGT	2 cut(s)	589, 624
MalI	GATC	5 cut(s)	120, 143, 394, 456, 639
MboI	GATC	5 cut(s)	118, 141, 392, 454, 637
MboII	GAAGA	4 cut(s)	171, 570, 643, 668
MflI	RGATCY	3 cut(s)	118, 141, 392
MhlI	GDGCHC	1 cut(s)	696
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	3 cut(s)	177, 569, 657
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	595
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	6 cut(s)	55, 73, 214, 219, 303, 744
Mox20I	TGGCCA	1 cut(s)	38
Mph1103I	ATGCAT	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	591
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	4 cut(s)	243, 272, 444, 816
Msp20I	TGGCCA	1 cut(s)	38
MspA1I	CMGCKG	2 cut(s)	607, 744
Mva1269I	GAATGC	1 cut(s)	656
MwoI	GCNNNNNNNGC	2 cut(s)	386, 613
NdeI	CATATG	1 cut(s)	767
NdeII	GATC	5 cut(s)	118, 141, 392, 454, 637
NlaIII	CATG	4 cut(s)	170, 436, 732, 778
NlaIV	GGNNCC	3 cut(s)	353, 394, 485
NsiI	ATGCAT	1 cut(s)	29
NspI	RCATGY	2 cut(s)	170, 732
PceI	AGGCCT	1 cut(s)	616
PctI	GAATGC	1 cut(s)	656
PdmI	GAANNNNTTC	1 cut(s)	591
PkrI	GCNGC	3 cut(s)	288, 609, 746
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
PpuMI	RGGWCCY	1 cut(s)	351
PshBI	ATTAAT	1 cut(s)	444
Psp124BI	GAGCTC	1 cut(s)	696
Psp5II	RGGWCCY	1 cut(s)	351
PspN4I	GGNNCC	3 cut(s)	353, 394, 485
PspPI	GGNCC	1 cut(s)	351
PspPPI	RGGWCCY	1 cut(s)	351
PstNI	CAGNNNCTG	1 cut(s)	646
PsuI	RGATCY	3 cut(s)	118, 141, 392
PvuII	CAGCTG	2 cut(s)	607, 744
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	696
SaqAI	TTAA	4 cut(s)	243, 272, 444, 816
SatI	GCNGC	3 cut(s)	287, 608, 745
Sau3AI	GATC	5 cut(s)	118, 141, 392, 454, 637
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	1 cut(s)	595
SduI	GDGCHC	1 cut(s)	696
SfaNI	GCATC	3 cut(s)	14, 106, 389
SfcI	CTRYAG	1 cut(s)	618
SinI	GGWCC	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	3 cut(s)	177, 569, 657
SseBI	AGGCCT	1 cut(s)	616
SsiI	CCGC	2 cut(s)	535, 654
SstI	GAGCTC	1 cut(s)	696
StuI	AGGCCT	1 cut(s)	616
StyI	CCWWGG	1 cut(s)	611
TaaI	ACNGT	4 cut(s)	59, 674, 810, 845
TaiI	ACGT	2 cut(s)	592, 627
TaqI	TCGA	1 cut(s)	585
TasI	AATT	3 cut(s)	177, 569, 657
Tru1I	TTAA	4 cut(s)	243, 272, 444, 816
Tru9I	TTAA	4 cut(s)	243, 272, 444, 816
TscAI	CASTG	3 cut(s)	69, 457, 867
TseI	GCWGC	3 cut(s)	286, 607, 744
TspDTI	ATGAA	3 cut(s)	27, 418, 749
TspRI	CASTG	3 cut(s)	69, 457, 867
VpaK11BI	GGWCC	1 cut(s)	351
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	3 cut(s)	177, 569, 657
XceI	RCATGY	2 cut(s)	170, 732
XmiI	GTMKAC	2 cut(s)	329, 621
XmnI	GAANNNNTTC	1 cut(s)	591
Zsp2I	ATGCAT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.