Rh2AG412800

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0004363
Physical Location & Seq
Forward (+)
61257860 .. 61258810
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG412800.1

Sequence Viewer

Length: 321 bp
ATGAAGGATGAGTGGAGGTTCAATCAGTTTAGAGACCCTTTGGGGGTTGTGGGTGTGGTGGTTGTGTGGGGATCCGTTGTGTGGTTGCTGTTTCAGAATCTGAGCTTGTGTTGGTCTTTGAATGATGAAGCAACATGTAGATTCATTACCTCTGACTATACATGCGATAATACCAGCTGCAAGAGGGCTTTTCATAGCATATGTCTCGTGGACTGGTTGCATTCCATTACCACAACAAGGCAGTCATTTGATGTTTTATTTGGAAGTTGTCCATACTATTCAGAACCAGTTGCAGTGAAAATCAATAGTGTGAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03460 ko04120 map03460 map04120
Pfam Domains
Protein Families
FANCL_C WD-3

Protein Analysis

106

Amino Acids

12.22

Weight (kDa)

6.69

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FANCL_C PF11793 51 - 101 3.8e-21 FANCL C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 66, 79
AfiI CCNNNNNNNGG 3 cut(s) 43, 81, 237
AflIII ACRYGT 1 cut(s) 134
AgsI TTSAA 2 cut(s) 22, 121
AluBI AGCT 2 cut(s) 105, 177
AluI AGCT 2 cut(s) 105, 177
Alw26I GTCTC 2 cut(s) 27, 209
AlwI GGATC 2 cut(s) 66, 79
AlwNI CAGNNNCTG 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 177
BamHI GGATCC 1 cut(s) 71
BauI CACGAG 1 cut(s) 206
BbvI GCAGC 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 187, 221
BcoDI GTCTC 2 cut(s) 27, 209
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 73
BsaI GGTCTC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 81, 237
Bse1I ACTGG 2 cut(s) 218, 287
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 3 cut(s) 43, 81, 237
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 218, 287
BseXI GCAGC 1 cut(s) 164
BslI CCNNNNNNNGG 3 cut(s) 43, 81, 237
BsmAI GTCTC 2 cut(s) 27, 209
BsmI GAATGC 1 cut(s) 220
Bso31I GGTCTC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 73
BspPI GGATC 2 cut(s) 66, 79
BspTNI GGTCTC 1 cut(s) 27
BsrI ACTGG 2 cut(s) 218, 287
BssMI GATC 1 cut(s) 71
BssSI CACGAG 1 cut(s) 206
Bst2BI CACGAG 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 13
BstKTI GATC 1 cut(s) 74
BstMAI GTCTC 2 cut(s) 27, 209
BstMBI GATC 1 cut(s) 71
BstNSI RCATGY 2 cut(s) 138, 165
BstV1I GCAGC 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BtsCI GGATG 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 300
CaiI CAGNNNCTG 1 cut(s) 100
CviAII CATG 2 cut(s) 135, 162
CviJI RGCY 3 cut(s) 105, 177, 188
CviKI_1 RGCY 3 cut(s) 105, 177, 188
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 27
FaeI CATG 2 cut(s) 138, 165
FaiI YATR 7 cut(s) 136, 159, 163, 195, 200, 202, 274
FatI CATG 2 cut(s) 134, 161
FauNDI CATATG 1 cut(s) 200
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 178
Hin1II CATG 2 cut(s) 138, 165
HinfI GANTC 2 cut(s) 97, 141
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 4 cut(s) 96, 102, 154, 283
Hpy8I GTNNAC 1 cut(s) 211
HpyCH4V TGCA 3 cut(s) 180, 220, 293
HpyF3I CTNAG 1 cut(s) 101
Hsp92II CATG 2 cut(s) 138, 165
Kzo9I GATC 1 cut(s) 71
LpnPI CCDG 3 cut(s) 187, 199, 300
Lsp1109I GCAGC 1 cut(s) 164
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MflI RGATCY 1 cut(s) 71
MnlI CCTC 3 cut(s) 9, 160, 177
MspA1I CMGCKG 1 cut(s) 177
Mva1269I GAATGC 1 cut(s) 220
NdeI CATATG 1 cut(s) 200
NdeII GATC 1 cut(s) 71
NlaIII CATG 2 cut(s) 138, 165
NlaIV GGNNCC 1 cut(s) 73
NspI RCATGY 2 cut(s) 138, 165
PciI ACATGT 1 cut(s) 134
PctI GAATGC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 97, 141
PkrI GCNGC 1 cut(s) 179
PscI ACATGT 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 73
PstNI CAGNNNCTG 1 cut(s) 100
PsuI RGATCY 1 cut(s) 71
PvuII CAGCTG 1 cut(s) 177
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 1 cut(s) 71
SetI ASST 4 cut(s) 20, 107, 152, 179
TfiI GAWTC 2 cut(s) 97, 141
TscAI CASTG 1 cut(s) 300
TseI GCWGC 1 cut(s) 177
TspDTI ATGAA 4 cut(s) 17, 133, 141, 182
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 1 cut(s) 300
XceI RCATGY 2 cut(s) 138, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.