Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004363

Physical Location & Seq

Genomic Coordinates Reverse (-)

71863024 .. 71867319

Gene Structure 4296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00134380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGAATGTAGTGAAGAGAGTAGATGCAGAGAGCTGGCCAAAGCCTCTACCTTTTACCGTGCAGTCTACTCTGAGATAGAGGAAGTTGGGTGGGAGAATCTCGTGAGATTTGGTGGAGATCTAACATCTCTCAGCTTTCGGGTCTTAGATTGTAAGGGCAGAGTGCATGTTATGGAAATTCAGTTGGATAAAACCCATCCTACCTATCCTCCTTCAATTTCGGCAGATGTACCTTATTTGTTTAATTTAAAATGGTCATCAAACTCAAGATTGAAAGATGTGGTTCAGCAGTTTAGAAAGCATCTGGAGAAGCTTCAGACATTTTGGTCTACTTTGGATGATATTGATAGGTCCCTATGTGTTGTTGAACCTAAACAAGCATCTCCTGCTGTATCCAATCGCCAAGTCATTATAGGAAATGATTGTTTCGTCATGTTGTCTATTAATGCTACTGATCCTAGATCTTTACCAGAGTGTCGTTTTATTGGTACAGGTCAAATCGTGAACCTTTTGAGAGACAGATGGCAGAGAAATAGCAAAAGATGGGTAAAAGACAAAGAATTTTTGGTTAATCTCGAAACTCTTCTGGAGACTCAGCTGCCAAAGCCTGCAGATGTTGAGAAGAATGATCAGCAAGTGGAATGCGGAATTTGTTATGCTCCGAGTCTTCCAGTTGATGATGAGCTCAGAGGTAAGAGTGGAACTGGGACTGACTATACATGCGATAATAACAGCTGCAAGAGGGCTTTTCATAGCATATGTCTCGTGGACTGGCTGCGTTCCATTACCACAACAAGGCAGTCATTTGATGTTTTATTTGGAAGTTGTCCATACTGTTCAGAACCAGTTGCAGTGAAAATCAATAGTGTGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03460 ko04120 map03460 map04120

Pfam Domains

Protein Families

FANCL_C WD-3

Protein Analysis

292

Amino Acids

33.33

Weight (kDa)

6.46

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FANCL_d2	PF18890	17 - 105	1.5e-18	FANCL UBC-like domain 2
FANCL_d3	PF18891	108 - 203	4.4e-22	FANCL UBC-like domain 3
FANCL_C	PF11793	211 - 287	9.6e-30	FANCL C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740 AT5G65740
fragaria_vesca	FvH4_1g18540 FvH4_1g18540 FvH4_1g18540
malus_domestica	MD02G1192700.v1.1 MD15G1303200.v1.1
prunus_persica	Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1 Prupe.6G213700_v2.0.a1
pyrus_communis	pycom02g15670
rosa_chinensis	RchiOBHm_Chr2g0109231
rosa_laevigata	RLG00000017727
rosa_multiflora	Rmu_sc0001807.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134380
rosa_rugosa	Rorug02G0158700.1 Rorug07G0270600
rosa_samantha	Rh2AG210100 Rh2AG412800 Rh2BG220500 Rh2CG212500 Rh2DG216300 Rh7BG235400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	325
AccI	GTMKAC	2 cut(s)	66, 329
AciI	CCGC	1 cut(s)	645
AclWI	GGATC	1 cut(s)	449
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	3 cut(s)	177, 560, 648
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	2 cut(s)	231, 490
AfiI	CCNNNNNNNGG	1 cut(s)	795
AgsI	TTSAA	3 cut(s)	216, 274, 368
AluBI	AGCT	6 cut(s)	34, 135, 313, 598, 685, 735
AluI	AGCT	6 cut(s)	34, 135, 313, 598, 685, 735
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	3 cut(s)	510, 584, 767
AlwI	GGATC	1 cut(s)	449
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	3 cut(s)	598, 735, 775
ApoI	RAATTY	3 cut(s)	177, 560, 648
AseI	ATTAAT	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	582
AspS9I	GGNCC	1 cut(s)	351
AvaII	GGWCC	1 cut(s)	351
BalI	TGGCCA	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	687
BauI	CACGAG	2 cut(s)	101, 764
BbsI	GAAGAC	1 cut(s)	659
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	3 cut(s)	585, 722, 762
BccI	CCATC	3 cut(s)	204, 516, 537
BcgI	CGANNNNNNTGC	2 cut(s)	745, 779
BciVI	GTATCC	1 cut(s)	403
BclI	TGATCA	1 cut(s)	628
BcoDI	GTCTC	3 cut(s)	510, 584, 767
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	609
BfuI	GTATCC	1 cut(s)	403
BglII	AGATCT	2 cut(s)	118, 461
BisI	GCNGC	3 cut(s)	599, 736, 776
BlsI	GCNGC	3 cut(s)	600, 737, 777
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	353
BmrI	ACTGGG	1 cut(s)	714
BmsI	GCATC	3 cut(s)	14, 310, 389
BmuI	ACTGGG	1 cut(s)	714
BpiI	GAAGAC	1 cut(s)	659
BpmI	CTGGAG	2 cut(s)	326, 608
BpuEI	CTTGAG	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	1 cut(s)	795
Bse1I	ACTGG	4 cut(s)	671, 709, 776, 845
BseGI	GGATG	2 cut(s)	196, 343
BseLI	CCNNNNNNNGG	1 cut(s)	795
BseMII	CTCAG	4 cut(s)	63, 145, 608, 700
BseNI	ACTGG	4 cut(s)	671, 709, 776, 845
BseXI	GCAGC	3 cut(s)	585, 722, 762
BsgI	GTGCAG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	687
BslFI	GGGAC	2 cut(s)	337, 721
BslI	CCNNNNNNNGG	1 cut(s)	795
BsmAI	GTCTC	3 cut(s)	510, 584, 767
BsmFI	GGGAC	2 cut(s)	337, 721
BsmI	GAATGC	1 cut(s)	647
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	687
Bsp143I	GATC	4 cut(s)	118, 454, 461, 628
BspACI	CCGC	1 cut(s)	645
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	4 cut(s)	64, 144, 607, 699
BspLI	GGNNCC	1 cut(s)	353
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	1 cut(s)	449
BsrI	ACTGG	4 cut(s)	671, 709, 776, 845
BssMI	GATC	4 cut(s)	118, 454, 461, 628
BssSI	CACGAG	2 cut(s)	101, 764
Bst2BI	CACGAG	2 cut(s)	101, 764
Bst4CI	ACNGT	2 cut(s)	59, 836
Bst6I	CTCTTC	2 cut(s)	9, 588
BstAPI	GCANNNNNTGC	1 cut(s)	386
BstC8I	GCNNGC	2 cut(s)	36, 609
BstDEI	CTNAG	5 cut(s)	72, 131, 145, 594, 686
BstF5I	GGATG	2 cut(s)	196, 343
BstKTI	GATC	4 cut(s)	121, 457, 464, 631
BstMAI	GTCTC	3 cut(s)	510, 584, 767
BstMBI	GATC	4 cut(s)	118, 454, 461, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 604
BstNSI	RCATGY	2 cut(s)	170, 723
BstSFI	CTRYAG	1 cut(s)	609
BstV1I	GCAGC	3 cut(s)	585, 722, 762
BstV2I	GAAGAC	1 cut(s)	659
BstX2I	RGATCY	2 cut(s)	118, 461
BstYI	RGATCY	2 cut(s)	118, 461
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	196, 343
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	1 cut(s)	858
Cac8I	GCNNGC	2 cut(s)	36, 609
Cfr13I	GGNCC	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	230, 489
CviAII	CATG	3 cut(s)	167, 433, 720
CviQI	GTAC	2 cut(s)	230, 489
DdeI	CTNAG	5 cut(s)	72, 131, 145, 594, 686
DpnI	GATC	4 cut(s)	120, 456, 463, 630
DpnII	GATC	4 cut(s)	118, 454, 461, 628
DraI	TTTAAA	1 cut(s)	249
DrdI	GACNNNNNNGTC	1 cut(s)	325
DseDI	GACNNNNNNGTC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	9, 588
EarI	CTCTTC	2 cut(s)	9, 588
Ecl136II	GAGCTC	1 cut(s)	685
Eco24I	GRGCYC	1 cut(s)	687
Eco47I	GGWCC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	685
Eco57I	CTGAAG	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	685
EcoO109I	RGGNCCY	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	687
FaeI	CATG	3 cut(s)	170, 436, 723
FaqI	GGGAC	2 cut(s)	337, 721
FatI	CATG	3 cut(s)	166, 432, 719
FauNDI	CATATG	1 cut(s)	758
FbaI	TGATCA	1 cut(s)	628
FblI	GTMKAC	2 cut(s)	66, 329
Fnu4HI	GCNGC	3 cut(s)	599, 736, 776
FokI	GGATG	2 cut(s)	183, 350
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	3 cut(s)	599, 736, 776
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	3 cut(s)	599, 736, 776
GsuI	CTGGAG	2 cut(s)	326, 608
HaeIII	GGCC	1 cut(s)	38
Hin1II	CATG	3 cut(s)	170, 436, 723
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	3 cut(s)	97, 592, 664
Hpy166II	GTNNAC	4 cut(s)	67, 330, 505, 769
Hpy188I	TCNGA	5 cut(s)	73, 318, 663, 689, 841
Hpy188III	TCNNGA	6 cut(s)	103, 267, 305, 502, 575, 587
Hpy8I	GTNNAC	4 cut(s)	67, 330, 505, 769
HpyAV	CCTTC	1 cut(s)	222
HpyCH4III	ACNGT	2 cut(s)	59, 836
HpyCH4V	TGCA	6 cut(s)	27, 62, 166, 611, 738, 851
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 604
HpyF3I	CTNAG	5 cut(s)	72, 131, 145, 594, 686
Hsp92II	CATG	3 cut(s)	170, 436, 723
Ksp22I	TGATCA	1 cut(s)	628
Kzo9I	GATC	4 cut(s)	118, 454, 461, 628
LmnI	GCTCC	1 cut(s)	664
Lsp1109I	GCAGC	3 cut(s)	585, 722, 762
LweI	GCATC	3 cut(s)	14, 310, 389
MaeI	CTAG	1 cut(s)	459
MalI	GATC	4 cut(s)	120, 456, 463, 630
MboI	GATC	4 cut(s)	118, 454, 461, 628
MboII	GAAGA	4 cut(s)	26, 575, 634, 659
MflI	RGATCY	2 cut(s)	118, 461
MhlI	GDGCHC	1 cut(s)	687
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	5 cut(s)	177, 216, 244, 560, 648
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	2 cut(s)	586, 673
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	5 cut(s)	55, 73, 219, 683, 735
Mox20I	TGGCCA	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	582
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	4 cut(s)	243, 248, 444, 570
Msp20I	TGGCCA	1 cut(s)	38
MspA1I	CMGCKG	2 cut(s)	598, 735
Mva1269I	GAATGC	1 cut(s)	647
MwoI	GCNNNNNNNGC	2 cut(s)	386, 604
NdeI	CATATG	1 cut(s)	758
NdeII	GATC	4 cut(s)	118, 454, 461, 628
NlaIII	CATG	3 cut(s)	170, 436, 723
NlaIV	GGNNCC	1 cut(s)	353
NspI	RCATGY	2 cut(s)	170, 723
PctI	GAATGC	1 cut(s)	647
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	3 cut(s)	600, 737, 777
PleI	GAGTC	2 cut(s)	586, 672
PpsI	GAGTC	2 cut(s)	586, 672
PpuMI	RGGWCCY	1 cut(s)	351
PshBI	ATTAAT	1 cut(s)	444
Psp124BI	GAGCTC	1 cut(s)	687
Psp5II	RGGWCCY	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	353
PspPI	GGNCC	1 cut(s)	351
PspPPI	RGGWCCY	1 cut(s)	351
PstI	CTGCAG	1 cut(s)	613
PsuI	RGATCY	2 cut(s)	118, 461
PvuII	CAGCTG	2 cut(s)	598, 735
RsaI	GTAC	2 cut(s)	231, 490
RsaNI	GTAC	2 cut(s)	230, 489
SacI	GAGCTC	1 cut(s)	687
SaqAI	TTAA	4 cut(s)	243, 248, 444, 570
SatI	GCNGC	3 cut(s)	599, 736, 776
Sau3AI	GATC	4 cut(s)	118, 454, 461, 628
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	2 cut(s)	586, 673
SduI	GDGCHC	1 cut(s)	687
SfaNI	GCATC	3 cut(s)	14, 310, 389
SfcI	CTRYAG	1 cut(s)	609
SinI	GGWCC	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
Sse9I	AATT	5 cut(s)	177, 216, 244, 560, 648
SsiI	CCGC	1 cut(s)	645
SspMI	CTAG	1 cut(s)	459
SstI	GAGCTC	1 cut(s)	687
TaaI	ACNGT	2 cut(s)	59, 836
TaqI	TCGA	1 cut(s)	576
TasI	AATT	5 cut(s)	177, 216, 244, 560, 648
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	4 cut(s)	243, 248, 444, 570
Tru9I	TTAA	4 cut(s)	243, 248, 444, 570
TscAI	CASTG	1 cut(s)	858
TseI	GCWGC	3 cut(s)	598, 735, 775
TspDTI	ATGAA	1 cut(s)	740
TspRI	CASTG	1 cut(s)	858
VpaK11BI	GGWCC	1 cut(s)	351
VspI	ATTAAT	1 cut(s)	444
XapI	RAATTY	3 cut(s)	177, 560, 648
XceI	RCATGY	2 cut(s)	170, 723
XmiI	GTMKAC	2 cut(s)	66, 329
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.