Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004575

Physical Location & Seq

Genomic Coordinates Reverse (-)

26541562 .. 26544359

Gene Structure 2798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G66470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGCGGTCTCTCCGCATATTTCGCCTACTCTTTCCCGCTACAAATTCTTCTCTACTTCCGTTGTTGAAAACCCTAATTTCTCTCCGTATCGTATCTATAGTCGGCGGAGAGTTACCAAATCACATCTCCAGGCGCACAACAGTACCACTAGCTATGGCCGGACGGAACTCTCCTCCTCGAAGAAGCTATGGATTAGGCAACGAAGCTTCAGCGAAATGGAGGTTGAGCAAGCACAATTAGAAGATGATGAAGAACAAGTGGAGATCGATATCGTCGACGAAGCCAGTCTTCTCTCCCTGAGCATGAAACCGGACAGAAACATGGCGTTGCTCGACGATTATGAGATGGAGGAGCTTGGACACACGCCTAATACTCATCATCGGAGCGGATATGTGGCGGTGGTGGGGATGCCCAACGTCGGGAAAAGCACGCTTTCGAATCAAATGATTGGTCAGAAAATATCGATTGTTACAGATAAACCTCAAACGACGAGGCATCGGATTCTTGGTATTTGTTCTAGCCCTGAATATCAGATGATACTTTATGATACGCCTGGTGTAATTGAGAAGAAGATGCACAGGTTAGATACAATGATGATGAAGAATGTCAGAGATGCTGCCATCAATGCGGACTGCGTAGTAATTCTTGTTGATGCTTGTAAAACGCCTACTAATATAGAAGAAGTTTTGAAAGAGGGTTTGGGAGACCTTGAGAAAAAGCCACCCATGTTGCTTGTTATGAATAAGAAAGATCTGATCAAACCTGGTGAGATTGCCAAGAAACTGGAGTGGTATGAAAAATTTACGGATGTTGATGAAGTTATACCTGTAAGTGCAAAGTATGGACATGGAATAGAGGATGTCAAAGAGTGGATATTATCCAAACTTCCCTTCGGGCCACCTTATTATCCAAAGGATATTGTGAGCGAGCATCCAGAGAGATTTTTTGTTTCTGAGATTGTTAGAGAGAAAATATTTATGCAGTACCGAAATGAAGTTCCTTATGCATGTCAGGTGAACGTGCTGAGCTACAAAACTAGACCAGCTGCAAAAGATTTTATTCAAGTGGAAGTAGTAGTGGATAAAAATTCTCAGAAGATCATCCTTATAGGAAAAGAAGGAAAGGCTCTGAAAACACTAGCAACGGCTGCTCGGCTCGACATTGAAGATTTCCTTCAGAAGAAAGTCTTCCTCGAGGTGGAAGTGAAAGTGAAAGAGAACTGGAGACAAGACGAGGGGCTTCTCAAGTACTACGGCTATGGAGGACAGATCCGAGCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

427

Amino Acids

48.93

Weight (kDa)

6.59

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	132 - 249	1.6e-24	50S ribosome-binding GTPase
FeoB_N	PF02421	132 - 290	1.9e-12	Ferrous iron transport protein B
KH_2	PF07650	332 - 409	1e-14	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66470 AT5G66470
fragaria_vesca	FvH4_1g12880 FvH4_2g39510
malus_domestica	MD02G1143800.v1.1 MD15G1257100.v1.1
prunus_persica	Prupe.7G157900_v2.0.a1 Prupe.7G157900_v2.0.a1
pyrus_communis	pycom02g11370 pycom15g22500
rosa_chinensis	RchiOBHm_Chr2g0100961 RchiOBHm_Chr6g0301441
rosa_laevigata	RLG00000011253 RLG00000012203 RLG00000017029
rosa_multiflora	Rmu_sc0014417.1_g000011
rosa_roxburghii	Rroxscaffold_2G00141710 Rroxscaffold_7G00166820
rosa_rugosa	Rorug02G0094100 Rorug02G0094200 Rorug06G0304700
rosa_samantha	Rh2AG141700 Rh2BG146900 Rh2CG148200 Rh2DG147400 Rh6AG418400 Rh6BG424600 Rh6CG431900 Rh6DG417800
rosa_wichuraiana	Rw2G011120 Rw6G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1193
AccBSI	CCGCTC	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	276
AciI	CCGC	7 cut(s)	5, 14, 37, 106, 387, 398, 629
AclWI	GGATC	1 cut(s)	1264
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	3 cut(s)	44, 800, 1087
AcuI	CTGAAG	2 cut(s)	193, 1160
AfaI	GTAC	3 cut(s)	145, 986, 1250
AfiI	CCNNNNNNNGG	3 cut(s)	419, 420, 1198
AgsI	TTSAA	4 cut(s)	68, 691, 1064, 1166
AjnI	CCWGG	3 cut(s)	129, 553, 763
AjuI	GAANNNNNNNTTGG	4 cut(s)	683, 715, 875, 907
AluBI	AGCT	7 cut(s)	153, 187, 207, 355, 1029, 1046, 1277
AluI	AGCT	7 cut(s)	153, 187, 207, 355, 1029, 1046, 1277
Alw26I	GTCTC	3 cut(s)	13, 699, 1219
AlwI	GGATC	1 cut(s)	1264
Ama87I	CYCGRG	1 cut(s)	1193
AoxI	GGCC	2 cut(s)	157, 896
ApeKI	GCWGC	3 cut(s)	617, 1046, 1148
ApoI	RAATTY	3 cut(s)	44, 800, 1087
ArsI	GACNNNNNNTTYG	2 cut(s)	436, 468
Asp700I	GAANNNNTTC	1 cut(s)	1187
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	896
AsuHPI	GGTGA	2 cut(s)	779, 1027
AsuII	TTCGAA	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	1193
BaeI	ACNNNNGTAYC	2 cut(s)	127, 160
BbsI	GAAGAC	2 cut(s)	281, 1180
BbvI	GCAGC	3 cut(s)	604, 1033, 1135
BccI	CCATC	2 cut(s)	340, 629
BceAI	ACGGC	2 cut(s)	1161, 1270
BciT130I	CCWGG	3 cut(s)	131, 555, 765
BclI	TGATCA	1 cut(s)	756
BcoDI	GTCTC	3 cut(s)	13, 699, 1219
BfaI	CTAG	4 cut(s)	150, 519, 1038, 1139
BfmI	CTRYAG	1 cut(s)	97
BglII	AGATCT	1 cut(s)	751
BisI	GCNGC	3 cut(s)	618, 1047, 1149
BlpI	GCTNAGC	1 cut(s)	1025
BlsI	GCNGC	3 cut(s)	619, 1048, 1150
BmcAI	AGTACT	1 cut(s)	1250
Bme1390I	CCNGG	3 cut(s)	131, 555, 765
BmeT110I	CYCGRG	1 cut(s)	1193
BmgT120I	GGNCC	1 cut(s)	896
BmrFI	CCNGG	3 cut(s)	131, 555, 765
BmsI	GCATC	6 cut(s)	399, 505, 564, 604, 643, 940
BpiI	GAAGAC	2 cut(s)	281, 1180
BpmI	CTGGAG	3 cut(s)	113, 806, 1243
Bpu10I	CCTNAGC	1 cut(s)	299
Bpu1102I	GCTNAGC	1 cut(s)	1025
Bpu14I	TTCGAA	1 cut(s)	437
BpuEI	CTTGAG	2 cut(s)	731, 1229
Bsa29I	ATCGAT	2 cut(s)	267, 464
BsaBI	GATNNNNATC	1 cut(s)	269
BsaI	GGTCTC	2 cut(s)	13, 699
BsaWI	WCCGGW	1 cut(s)	310
Bsc4I	CCNNNNNNNGG	3 cut(s)	419, 420, 1198
Bse1I	ACTGG	3 cut(s)	285, 789, 1226
Bse8I	GATNNNNATC	1 cut(s)	269
BseBI	CCWGG	3 cut(s)	131, 555, 765
BseCI	ATCGAT	2 cut(s)	267, 464
BseGI	GGATG	5 cut(s)	414, 814, 865, 931, 1101
BseJI	GATNNNNATC	1 cut(s)	269
BseLI	CCNNNNNNNGG	3 cut(s)	419, 420, 1198
BseMII	CTCAG	4 cut(s)	290, 945, 1016, 1106
BseNI	ACTGG	3 cut(s)	285, 789, 1226
BseRI	GAGGAG	3 cut(s)	163, 166, 365
BseXI	GCAGC	3 cut(s)	604, 1033, 1135
BshFI	GGCC	2 cut(s)	159, 898
BshVI	ATCGAT	2 cut(s)	267, 464
BsiHKCI	CYCGRG	1 cut(s)	1193
BsiSI	CCGG	2 cut(s)	160, 311
BslI	CCNNNNNNNGG	3 cut(s)	419, 420, 1198
BsmAI	GTCTC	3 cut(s)	13, 699, 1219
BsnI	GGCC	2 cut(s)	159, 898
Bso31I	GGTCTC	2 cut(s)	13, 699
BsoBI	CYCGRG	1 cut(s)	1193
Bsp119I	TTCGAA	1 cut(s)	437
Bsp143I	GATC	5 cut(s)	264, 751, 756, 1098, 1269
Bsp1720I	GCTNAGC	1 cut(s)	1025
BspACI	CCGC	7 cut(s)	5, 14, 37, 106, 387, 398, 629
BspANI	GGCC	2 cut(s)	159, 898
BspCNI	CTCAG	4 cut(s)	291, 946, 1017, 1105
BspDI	ATCGAT	2 cut(s)	267, 464
BspPI	GGATC	1 cut(s)	1264
BspT104I	TTCGAA	1 cut(s)	437
BspTNI	GGTCTC	2 cut(s)	13, 699
BsrBI	CCGCTC	1 cut(s)	387
BsrI	ACTGG	3 cut(s)	285, 789, 1226
BssMI	GATC	5 cut(s)	264, 751, 756, 1098, 1269
Bst2UI	CCWGG	3 cut(s)	131, 555, 765
Bst4CI	ACNGT	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	1148
BstBI	TTCGAA	1 cut(s)	437
BstC8I	GCNNGC	3 cut(s)	231, 431, 929
BstDEI	CTNAG	4 cut(s)	299, 954, 1025, 1092
BstF5I	GGATG	5 cut(s)	414, 814, 865, 931, 1101
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	5 cut(s)	267, 754, 759, 1101, 1272
BstMAI	GTCTC	3 cut(s)	13, 699, 1219
BstMBI	GATC	5 cut(s)	264, 751, 756, 1098, 1269
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 626, 1148
BstNI	CCWGG	3 cut(s)	131, 555, 765
BstNSI	RCATGY	1 cut(s)	1011
BstSCI	CCNGG	3 cut(s)	129, 553, 763
BstSFI	CTRYAG	1 cut(s)	97
BstV1I	GCAGC	3 cut(s)	604, 1033, 1135
BstV2I	GAAGAC	2 cut(s)	281, 1180
BstX2I	RGATCY	2 cut(s)	751, 1269
BstXI	CCANNNNNNTGG	1 cut(s)	784
BstYI	RGATCY	2 cut(s)	751, 1269
Bsu15I	ATCGAT	2 cut(s)	267, 464
BsuRI	GGCC	2 cut(s)	159, 898
BsuTUI	ATCGAT	2 cut(s)	267, 464
BtsCI	GGATG	5 cut(s)	414, 814, 865, 931, 1101
Cac8I	GCNNGC	3 cut(s)	231, 431, 929
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	896
ClaI	ATCGAT	2 cut(s)	267, 464
CsiI	ACCWGGT	1 cut(s)	763
Csp6I	GTAC	3 cut(s)	144, 985, 1249
CspCI	CAANNNNNGTGG	2 cut(s)	711, 746
CviAII	CATG	5 cut(s)	304, 322, 727, 848, 1008
CviQI	GTAC	3 cut(s)	144, 985, 1249
DdeI	CTNAG	4 cut(s)	299, 954, 1025, 1092
DpnI	GATC	5 cut(s)	266, 753, 758, 1100, 1271
DpnII	GATC	5 cut(s)	264, 751, 756, 1098, 1269
EaeI	YGGCCR	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	121
Eco31I	GGTCTC	2 cut(s)	13, 699
Eco32I	GATATC	1 cut(s)	271
Eco57I	CTGAAG	2 cut(s)	193, 1160
Eco88I	CYCGRG	1 cut(s)	1193
EcoRII	CCWGG	3 cut(s)	129, 553, 763
EcoRV	GATATC	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	1009
FaeI	CATG	5 cut(s)	307, 325, 730, 851, 1011
FalI	AAGNNNNNCTT	6 cut(s)	273, 305, 1158, 1190, 1172, 1204
FatI	CATG	5 cut(s)	303, 321, 726, 847, 1007
FauI	CCCGC	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	756
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	3 cut(s)	618, 1047, 1149
FokI	GGATG	5 cut(s)	421, 821, 872, 918, 1088
Fsp4HI	GCNGC	3 cut(s)	618, 1047, 1149
FspBI	CTAG	4 cut(s)	150, 519, 1038, 1139
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	3 cut(s)	618, 1047, 1149
GsuI	CTGGAG	3 cut(s)	113, 806, 1243
HaeIII	GGCC	2 cut(s)	159, 898
HapII	CCGG	2 cut(s)	160, 311
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	5 cut(s)	307, 325, 730, 851, 1011
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	205
HinfI	GANTC	2 cut(s)	439, 502
HpaII	CCGG	2 cut(s)	160, 311
HphI	GGTGA	2 cut(s)	779, 1027
Hpy166II	GTNNAC	2 cut(s)	277, 1018
Hpy188III	TCNNGA	2 cut(s)	421, 935
Hpy8I	GTNNAC	2 cut(s)	277, 1018
Hpy99I	CGWCG	5 cut(s)	278, 281, 338, 422, 493
HpyAV	CCTTC	3 cut(s)	901, 1112, 1184
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	2 cut(s)	417, 1020
HpyCH4V	TGCA	5 cut(s)	577, 836, 982, 1007, 1049
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 626, 1148
HpyF3I	CTNAG	4 cut(s)	299, 954, 1025, 1092
HpySE526I	ACGT	2 cut(s)	417, 1020
Hsp92II	CATG	5 cut(s)	307, 325, 730, 851, 1011
HspAI	GCGC	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	756
Kzo9I	GATC	5 cut(s)	264, 751, 756, 1098, 1269
LmnI	GCTCC	2 cut(s)	352, 384
Lsp1109I	GCAGC	3 cut(s)	604, 1033, 1135
LweI	GCATC	6 cut(s)	399, 505, 564, 604, 643, 940
MabI	ACCWGGT	1 cut(s)	763
MaeI	CTAG	4 cut(s)	150, 519, 1038, 1139
MaeII	ACGT	2 cut(s)	417, 1020
MaeIII	GTNAC	2 cut(s)	112, 469
MalI	GATC	5 cut(s)	266, 753, 758, 1100, 1271
MbiI	CCGCTC	1 cut(s)	387
MboI	GATC	5 cut(s)	264, 751, 756, 1098, 1269
MflI	RGATCY	2 cut(s)	751, 1269
MluCI	AATT	7 cut(s)	44, 76, 236, 561, 642, 800, 1087
Mph1103I	ATGCAT	1 cut(s)	1009
MroXI	GAANNNNTTC	1 cut(s)	1187
MspA1I	CMGCKG	1 cut(s)	1046
MspI	CCGG	2 cut(s)	160, 311
MspR9I	CCNGG	3 cut(s)	131, 555, 765
MvaI	CCWGG	3 cut(s)	131, 555, 765
MwoI	GCNNNNNNNGC	3 cut(s)	22, 626, 1148
NdeII	GATC	5 cut(s)	264, 751, 756, 1098, 1269
NlaIII	CATG	5 cut(s)	307, 325, 730, 851, 1011
NmeAIII	GCCGAG	1 cut(s)	1132
NsiI	ATGCAT	1 cut(s)	1009
NspI	RCATGY	1 cut(s)	1011
NspV	TTCGAA	1 cut(s)	437
PaeR7I	CTCGAG	1 cut(s)	1193
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	1187
PfeI	GAWTC	2 cut(s)	439, 502
PkrI	GCNGC	3 cut(s)	619, 1048, 1150
Psp6I	CCWGG	3 cut(s)	129, 553, 763
PspGI	CCWGG	3 cut(s)	129, 553, 763
PspPI	GGNCC	1 cut(s)	896
PspXI	VCTCGAGB	1 cut(s)	1193
PsuI	RGATCY	2 cut(s)	751, 1269
PvuII	CAGCTG	1 cut(s)	1046
RsaI	GTAC	3 cut(s)	145, 986, 1250
RsaNI	GTAC	3 cut(s)	144, 985, 1249
SalI	GTCGAC	1 cut(s)	275
SatI	GCNGC	3 cut(s)	618, 1047, 1149
Sau3AI	GATC	5 cut(s)	264, 751, 756, 1098, 1269
Sau96I	GGNCC	1 cut(s)	896
ScaI	AGTACT	1 cut(s)	1250
ScrFI	CCNGG	3 cut(s)	131, 555, 765
SexAI	ACCWGGT	1 cut(s)	763
SfaNI	GCATC	6 cut(s)	399, 505, 564, 604, 643, 940
SfcI	CTRYAG	1 cut(s)	97
Sfr274I	CTCGAG	1 cut(s)	1193
SfuI	TTCGAA	1 cut(s)	437
SgrDI	CGTCGACG	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	1193
SmlI	CTYRAG	3 cut(s)	710, 1193, 1244
SmoI	CTYRAG	3 cut(s)	710, 1193, 1244
Sse9I	AATT	7 cut(s)	44, 76, 236, 561, 642, 800, 1087
SsiI	CCGC	7 cut(s)	5, 14, 37, 106, 387, 398, 629
SspI	AATATT	1 cut(s)	975
SspMI	CTAG	4 cut(s)	150, 519, 1038, 1139
StyD4I	CCNGG	3 cut(s)	129, 553, 763
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	2 cut(s)	420, 1023
TaqI	TCGA	8 cut(s)	179, 267, 276, 333, 437, 464, 1158, 1194
TasI	AATT	7 cut(s)	44, 76, 236, 561, 642, 800, 1087
TatI	WGTACW	1 cut(s)	1248
TfiI	GAWTC	2 cut(s)	439, 502
TseI	GCWGC	3 cut(s)	617, 1046, 1148
TspDTI	ATGAA	7 cut(s)	264, 320, 614, 755, 810, 831, 1008
TspGWI	ACGGA	4 cut(s)	49, 75, 179, 821
XapI	RAATTY	3 cut(s)	44, 800, 1087
XceI	RCATGY	1 cut(s)	1011
XhoI	CTCGAG	1 cut(s)	1193
XmiI	GTMKAC	1 cut(s)	276
XmnI	GAANNNNTTC	1 cut(s)	1187
XspI	CTAG	4 cut(s)	150, 519, 1038, 1139
ZrmI	AGTACT	1 cut(s)	1250
Zsp2I	ATGCAT	1 cut(s)	1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.