Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004575

Physical Location & Seq

Genomic Coordinates Reverse (-)

28363913 .. 28366422

Gene Structure 2510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g39510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGAAGAGTTGTGGTCTGCTTTTCTTTGCTCTTCTGCTTCTTCAATATCATGGAGTTCTTGTCCAACAAGTAGAAGCAGAAGATGATTTTGTGAAAACCAAAGGAGTCCAGTTTATGCTCAATGGAACCCCCTATTATGCAAATGGGTTCAATGCTTACTGGTTAATGTACATGGCCTCTGATCCCTCTCAGAGAAACCTTGTTTCCTCTGCCTTTCAACAAGCTTCCAAAAATGGCCTCACGATTGCAAGAACTTGGGCTTTCAACGATGGTGATTACAGAGCCCTACAGTACTCTCCTGGCTCCTACAACGAGCAAAGTTTCCAGGGGTTGGATTTTGTGGTATCTGAGGCAAGGAAGTATGGGATAAAGTTGGTGCTGAGTTTGGTGAATAGCTATGAGAACTTCGGAGGCAGGAAACAGTATGTGGAATGGGCAAGAAGCCAAGGACACCAGTCTATAAATTCTGAGGATGATTTTTTTACCAACTCTGTTGTGAAAGGCTACTACAAAAATCATATCAAGACTGTACTCACGAGAAGGAATAGTCTCACTGGTGTTGCTTACAAAGATGAACCAACTATAATGGCTTGGGAGCTGATGAATGAACCAAGATGCACTTCTGATCCGTCAGGAAGAACCATTCAGGCTTGGATTACAGAGATGGCATCTTACTTGAAATCTATTGATGGAAATCACTTGCTTGAAGCTGGACTTGAAGGCTTTTATGGAGAATCAAAGCAGCAAACTAATCCAAAAGACTTTCAAGTTGGAACAGATTTTATTGCAAACAATCAGATTCCTGGGATTGATTTTGCAACTGTTCACTCATACCCTGACCAATGGTTAACGGGGTCAAATTATGAAGATCAAGTCTCTTTCTTGAGCAGTTGGGTCAATGATCACATCCAAGATGCACAGAACATTCTTCATAAGCCAGTTCTCTTTGCTGAGTTTGGAAGGTCTTTGAAAGAGTCAGGCTATACCACCAGCCAACGTGACCAGATTTTCAACACTCTGTACTCGGCCATATACTCCTCAGCTAGGGGTGGAGGGGCAGCTGTTGGCGGCTTGTTCTGGCAACTTCTTGCTGAAGGAATGGACTCTTTTCAAGACGGGTATGGAGTAGTGTTGAGTGAGAGTTCCTCTACAGTTGGTATAATTGCCGAAGAGTCTCAGAGGCTTATCAAGATTCGGAAGATGTATGCCAGGCTGAGAAACATTGAGAAGTGGAAGAGAGCAAGGGATATCAGAAGGGCTCAATGGTGGTCTGGGAACAAGGTGAAAGATACAGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005623 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009845 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0010412 GO:0015923 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044464 GO:0045229 GO:0046355 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090351 GO:1901575 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

434

Amino Acids

49.01

Weight (kDa)

6.41

Isoelectric Point (pI)

38.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	29 - 361	1.2e-53	GH family 5 beta-mannosidase-like
Cellulase	PF00150	64 - 339	7e-13	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66470 AT5G66470
fragaria_vesca	FvH4_1g12880 FvH4_2g39510
malus_domestica	MD02G1143800.v1.1 MD15G1257100.v1.1
prunus_persica	Prupe.7G157900_v2.0.a1 Prupe.7G157900_v2.0.a1
pyrus_communis	pycom02g11370 pycom15g22500
rosa_chinensis	RchiOBHm_Chr2g0100961 RchiOBHm_Chr6g0301441
rosa_laevigata	RLG00000011253 RLG00000012203 RLG00000017029
rosa_multiflora	Rmu_sc0014417.1_g000011
rosa_roxburghii	Rroxscaffold_2G00141710 Rroxscaffold_7G00166820
rosa_rugosa	Rorug02G0094100 Rorug02G0094200 Rorug06G0304700
rosa_samantha	Rh2AG141700 Rh2BG146900 Rh2CG148200 Rh2DG147400 Rh6AG418400 Rh6BG424600 Rh6CG431900 Rh6DG417800
rosa_wichuraiana	Rw2G011120 Rw6G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	331
AciI	CCGC	1 cut(s)	1068
AclWI	GGATC	2 cut(s)	176, 620
AcoI	YGGCCR	1 cut(s)	1026
AcsI	RAATTY	1 cut(s)	463
AcuI	CTGAAG	1 cut(s)	1113
AfaI	GTAC	4 cut(s)	170, 293, 531, 1022
AfiI	CCNNNNNNNGG	2 cut(s)	331, 1044
AjnI	CCWGG	4 cut(s)	298, 324, 802, 1208
AjuI	GAANNNNNNNTTGG	2 cut(s)	604, 636
AluBI	AGCT	6 cut(s)	224, 396, 598, 710, 1043, 1061
AluI	AGCT	6 cut(s)	224, 396, 598, 710, 1043, 1061
Alw26I	GTCTC	3 cut(s)	554, 880, 1179
AlwI	GGATC	2 cut(s)	176, 620
AoxI	GGCC	3 cut(s)	174, 235, 1026
ApeKI	GCWGC	2 cut(s)	742, 1058
ApoI	RAATTY	1 cut(s)	463
AsuHPI	GGTGA	3 cut(s)	284, 400, 1294
BanII	GRGCYC	2 cut(s)	286, 1261
BauI	CACGAG	1 cut(s)	535
BbvCI	CCTCAGC	1 cut(s)	1039
BbvI	GCAGC	2 cut(s)	754, 1070
BccI	CCATC	3 cut(s)	263, 658, 683
BciT130I	CCWGG	4 cut(s)	300, 326, 804, 1210
BclI	TGATCA	1 cut(s)	901
BcoDI	GTCTC	3 cut(s)	554, 880, 1179
BfaI	CTAG	1 cut(s)	1044
BfmI	CTRYAG	2 cut(s)	287, 1149
BisI	GCNGC	3 cut(s)	743, 1059, 1069
BlsI	GCNGC	3 cut(s)	744, 1060, 1070
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	4 cut(s)	300, 326, 804, 1210
BmiI	GGNNCC	2 cut(s)	127, 304
BmrFI	CCNGG	4 cut(s)	300, 326, 804, 1210
BmsI	GCATC	3 cut(s)	605, 677, 904
BoxI	GACNNNNGTC	1 cut(s)	454
BplI	GAGNNNNNCTC	2 cut(s)	1130, 1162
Bpu10I	CCTNAGC	1 cut(s)	1039
BpuEI	CTTGAG	1 cut(s)	904
BsaBI	GATNNNNATC	1 cut(s)	693
BsaJI	CCNNGG	3 cut(s)	325, 445, 803
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	2 cut(s)	331, 1044
Bse1I	ACTGG	5 cut(s)	109, 164, 454, 559, 938
Bse8I	GATNNNNATC	1 cut(s)	693
BseBI	CCWGG	4 cut(s)	300, 326, 804, 1210
BseDI	CCNNGG	3 cut(s)	325, 445, 803
BseGI	GGATG	2 cut(s)	478, 906
BseJI	GATNNNNATC	1 cut(s)	693
BseLI	CCNNNNNNNGG	2 cut(s)	331, 1044
BseMII	CTCAG	8 cut(s)	203, 339, 371, 459, 942, 1053, 1190, 1205
BseNI	ACTGG	5 cut(s)	109, 164, 454, 559, 938
BseRI	GAGGAG	1 cut(s)	1027
BseXI	GCAGC	2 cut(s)	754, 1070
BshFI	GGCC	3 cut(s)	176, 237, 1028
BslI	CCNNNNNNNGG	2 cut(s)	331, 1044
BsmAI	GTCTC	3 cut(s)	554, 880, 1179
BsnI	GGCC	3 cut(s)	176, 237, 1028
Bsp1286I	GDGCHC	2 cut(s)	286, 1261
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	181, 625, 868, 901
BspACI	CCGC	1 cut(s)	1068
BspANI	GGCC	3 cut(s)	176, 237, 1028
BspCNI	CTCAG	8 cut(s)	202, 340, 372, 460, 943, 1052, 1189, 1206
BspLI	GGNNCC	2 cut(s)	127, 304
BspPI	GGATC	2 cut(s)	176, 620
BspQI	GCTCTTC	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	5 cut(s)	109, 164, 454, 559, 938
BssECI	CCNNGG	3 cut(s)	325, 445, 803
BssMI	GATC	4 cut(s)	181, 625, 868, 901
BssSI	CACGAG	1 cut(s)	535
BssT1I	CCWWGG	1 cut(s)	445
Bst2BI	CACGAG	1 cut(s)	535
Bst2UI	CCWGG	4 cut(s)	300, 326, 804, 1210
Bst4CI	ACNGT	5 cut(s)	291, 423, 529, 823, 1153
Bst6I	CTCTTC	3 cut(s)	36, 1164, 1229
BstAUI	TGTACA	1 cut(s)	168
BstDEI	CTNAG	8 cut(s)	189, 348, 380, 468, 951, 1039, 1176, 1214
BstENI	CCTNNNNNAGG	1 cut(s)	1042
BstF5I	GGATG	2 cut(s)	478, 906
BstKTI	GATC	4 cut(s)	184, 628, 871, 904
BstMAI	GTCTC	3 cut(s)	554, 880, 1179
BstMBI	GATC	4 cut(s)	181, 625, 868, 901
BstNI	CCWGG	4 cut(s)	300, 326, 804, 1210
BstPAI	GACNNNNGTC	1 cut(s)	454
BstSCI	CCNGG	4 cut(s)	298, 324, 802, 1208
BstSFI	CTRYAG	2 cut(s)	287, 1149
BstV1I	GCAGC	2 cut(s)	754, 1070
BsuRI	GGCC	3 cut(s)	176, 237, 1028
BtsCI	GGATG	2 cut(s)	478, 906
BtsIMutI	CAGTG	1 cut(s)	552
Csp6I	GTAC	4 cut(s)	169, 292, 530, 1021
CviAII	CATG	2 cut(s)	50, 172
CviQI	GTAC	4 cut(s)	169, 292, 530, 1021
DdeI	CTNAG	8 cut(s)	189, 348, 380, 468, 951, 1039, 1176, 1214
DpnI	GATC	4 cut(s)	183, 627, 870, 903
DpnII	GATC	4 cut(s)	181, 625, 868, 901
EaeI	YGGCCR	1 cut(s)	1026
Eam1104I	CTCTTC	3 cut(s)	36, 1164, 1229
EarI	CTCTTC	3 cut(s)	36, 1164, 1229
Eco130I	CCWWGG	1 cut(s)	445
Eco24I	GRGCYC	2 cut(s)	286, 1261
Eco32I	GATATC	1 cut(s)	1249
Eco57I	CTGAAG	1 cut(s)	1113
EcoNI	CCTNNNNNAGG	1 cut(s)	1042
EcoRII	CCWGG	4 cut(s)	298, 324, 802, 1208
EcoRV	GATATC	1 cut(s)	1249
EcoT14I	CCWWGG	1 cut(s)	445
EcoT38I	GRGCYC	2 cut(s)	286, 1261
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	2 cut(s)	53, 175
FalI	AAGNNNNNCTT	4 cut(s)	604, 636, 699, 731
FatI	CATG	2 cut(s)	49, 171
FbaI	TGATCA	1 cut(s)	901
Fnu4HI	GCNGC	3 cut(s)	743, 1059, 1069
FokI	GGATG	2 cut(s)	485, 893
FriOI	GRGCYC	2 cut(s)	286, 1261
Fsp4HI	GCNGC	3 cut(s)	743, 1059, 1069
FspBI	CTAG	1 cut(s)	1044
GluI	GCNGC	3 cut(s)	743, 1059, 1069
HaeIII	GGCC	3 cut(s)	176, 237, 1028
Hin1II	CATG	2 cut(s)	53, 175
HincII	GTYRAC	1 cut(s)	849
HindII	GTYRAC	1 cut(s)	849
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	7 cut(s)	105, 734, 799, 974, 1103, 1172, 1192
HpaI	GTTAAC	1 cut(s)	849
HphI	GGTGA	3 cut(s)	284, 400, 1294
Hpy166II	GTNNAC	2 cut(s)	826, 849
Hpy188III	TCNNGA	7 cut(s)	241, 523, 535, 633, 883, 1112, 1189
Hpy8I	GTNNAC	2 cut(s)	826, 849
HpyAV	CCTTC	5 cut(s)	534, 713, 954, 1088, 1248
HpyCH4III	ACNGT	5 cut(s)	291, 423, 529, 823, 1153
HpyCH4IV	ACGT	1 cut(s)	997
HpyCH4V	TGCA	6 cut(s)	140, 248, 618, 788, 818, 917
HpyF3I	CTNAG	8 cut(s)	189, 348, 380, 468, 951, 1039, 1176, 1214
HpySE526I	ACGT	1 cut(s)	997
Hsp92II	CATG	2 cut(s)	53, 175
Ksp22I	TGATCA	1 cut(s)	901
KspAI	GTTAAC	1 cut(s)	849
Kzo9I	GATC	4 cut(s)	181, 625, 868, 901
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	308, 595
Lsp1109I	GCAGC	2 cut(s)	754, 1070
LweI	GCATC	3 cut(s)	605, 677, 904
MaeI	CTAG	1 cut(s)	1044
MaeII	ACGT	1 cut(s)	997
MaeIII	GTNAC	1 cut(s)	998
MalI	GATC	4 cut(s)	183, 627, 870, 903
MboI	GATC	4 cut(s)	181, 625, 868, 901
MhlI	GDGCHC	2 cut(s)	286, 1261
MluCI	AATT	4 cut(s)	463, 859, 1161, 1297
MlyI	GAGTC	4 cut(s)	114, 983, 1097, 1181
MmeI	TCCRAC	3 cut(s)	88, 312, 751
MseI	TTAA	2 cut(s)	164, 848
MspA1I	CMGCKG	1 cut(s)	1061
MspR9I	CCNGG	4 cut(s)	300, 326, 804, 1210
MvaI	CCWGG	4 cut(s)	300, 326, 804, 1210
NdeII	GATC	4 cut(s)	181, 625, 868, 901
NlaIII	CATG	2 cut(s)	53, 175
NlaIV	GGNNCC	2 cut(s)	127, 304
NmeAIII	GCCGAG	1 cut(s)	1004
NmuCI	GTSAC	1 cut(s)	998
PciSI	GCTCTTC	1 cut(s)	36
PfeI	GAWTC	3 cut(s)	734, 799, 1192
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	3 cut(s)	744, 1060, 1070
PleI	GAGTC	4 cut(s)	113, 982, 1097, 1180
PpsI	GAGTC	4 cut(s)	113, 982, 1097, 1180
PshAI	GACNNNNGTC	1 cut(s)	454
Psp6I	CCWGG	4 cut(s)	298, 324, 802, 1208
PspGI	CCWGG	4 cut(s)	298, 324, 802, 1208
PspN4I	GGNNCC	2 cut(s)	127, 304
PvuII	CAGCTG	1 cut(s)	1061
RsaI	GTAC	4 cut(s)	170, 293, 531, 1022
RsaNI	GTAC	4 cut(s)	169, 292, 530, 1021
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	164, 848
SatI	GCNGC	3 cut(s)	743, 1059, 1069
Sau3AI	GATC	4 cut(s)	181, 625, 868, 901
ScaI	AGTACT	1 cut(s)	293
SchI	GAGTC	4 cut(s)	114, 983, 1097, 1181
ScrFI	CCNGG	4 cut(s)	300, 326, 804, 1210
SduI	GDGCHC	2 cut(s)	286, 1261
SfaNI	GCATC	3 cut(s)	605, 677, 904
SfcI	CTRYAG	2 cut(s)	287, 1149
SmlI	CTYRAG	1 cut(s)	883
SmoI	CTYRAG	1 cut(s)	883
Sse9I	AATT	4 cut(s)	463, 859, 1161, 1297
SsiI	CCGC	1 cut(s)	1068
SspMI	CTAG	1 cut(s)	1044
StyD4I	CCNGG	4 cut(s)	298, 324, 802, 1208
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	5 cut(s)	291, 423, 529, 823, 1153
TaiI	ACGT	1 cut(s)	1000
TasI	AATT	4 cut(s)	463, 859, 1161, 1297
TatI	WGTACW	4 cut(s)	168, 291, 529, 1020
TauI	GCSGC	1 cut(s)	1071
TfiI	GAWTC	3 cut(s)	734, 799, 1192
Tru1I	TTAA	2 cut(s)	164, 848
Tru9I	TTAA	2 cut(s)	164, 848
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	1 cut(s)	998
TseI	GCWGC	2 cut(s)	742, 1058
Tsp45I	GTSAC	1 cut(s)	998
TspDTI	ATGAA	6 cut(s)	17, 588, 617, 621, 879, 920
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	1 cut(s)	559
Van91I	CCANNNNNTGG	1 cut(s)	331
XagI	CCTNNNNNAGG	1 cut(s)	1042
XapI	RAATTY	1 cut(s)	463
XspI	CTAG	1 cut(s)	1044
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.