Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004575

Physical Location & Seq

Genomic Coordinates Reverse (-)

11936852 .. 11939914

Gene Structure 3063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1143800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGCTTTGCTCGATGAGTACGAGATGGAGGAGCACGAGTACGCCGCCGATCCAAATCATCGGAGCGGGTATGTGGCTGTGCTGGGGAAGCCGAATGTGGGAAAGAGTACACTTTCGAATCAAATGGTTGGTCAGAAGTTGTCCATTGTTACTGATAAACCTCACACTACCCGGCATCGAATTCTCGGTGTATGTTCTGGCACAGACTATCAGATGATACTTTATGACACACCGGGTGTTATGGAGAAGAGAATGCACAAGTTGGATTCTATGATGATGAAGAATGTCCGGAGTGCTACAGTTAATGCAGACTGTGTAGTTGTTCTTGTTGATGCATGTAAAGTGCCTGAAAAAATTGATGAAGTGTTGGAAGAAGGTGTGGGTAACCAGACGGAAAGCTTGCCGCCCATTTTGCTGGTTATGAATAAGAAGGATTTGATTAAACCTGGTGAAATTGCAAAGAAACTAGAGTGGTATGAGAAATTTACAAACGTTGACGAGGTCATACCTGTGAGTGCCAAACTTGGACAGGGAGTGGAAGATGTCAAGCATTGGATTTTATCAAAACTTCCTTTTGGGCCAGCATATTATCCGAAGGACATTGTCAGTGAGCACCCAGAAAGATTCTTTGTATCTGAAATTGTTCGAGAAAAGATCTTTATGCAATACCGTAAAGAGATTCCTTATTCATGTCAGGTAAGTAGTTTAGAAGCTCAAAAGATTTGGCTTGTGAGGAATGGTACCCCATCCCTAGAGAGAAGCAGAAAGAAGAAGATAATATTCCTAGTTGTTTTTCTCCAGGTGAATGTCGTGAGCTACAAAACTAGGCCAATGGCAAAAGATTTTATACAAGTGGAAATTGTCGTTGAAAAAAACTCACAGAAGATCATTGTTATTGGAAAAGAAGGGAGAGCTCTGAAACTACTTGCAACTGCTGCTCGACTCAACATAGAAAACTTTTTGCAGAAGAAAGTTTTTCTAGAGGTTGTAGTGAAGGTTAAAGAGAATTGGCGGCAAGACGAAGTTCTTCTGAAGAATTATGGCTATGGGGGTCAAATTCAAGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

357

Amino Acids

40.63

Weight (kDa)

8.86

Isoelectric Point (pI)

28.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	25 - 143	3.2e-23	50S ribosome-binding GTPase
FeoB_N	PF02421	25 - 184	9.8e-12	Ferrous iron transport protein B
KH_2	PF07650	280 - 338	4.5e-14	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66470 AT5G66470
fragaria_vesca	FvH4_1g12880 FvH4_2g39510
malus_domestica	MD02G1143800.v1.1 MD15G1257100.v1.1
prunus_persica	Prupe.7G157900_v2.0.a1 Prupe.7G157900_v2.0.a1
pyrus_communis	pycom02g11370 pycom15g22500
rosa_chinensis	RchiOBHm_Chr2g0100961 RchiOBHm_Chr6g0301441
rosa_laevigata	RLG00000011253 RLG00000012203 RLG00000017029
rosa_multiflora	Rmu_sc0014417.1_g000011
rosa_roxburghii	Rroxscaffold_2G00141710 Rroxscaffold_7G00166820
rosa_rugosa	Rorug02G0094100 Rorug02G0094200 Rorug06G0304700
rosa_samantha	Rh2AG141700 Rh2BG146900 Rh2CG148200 Rh2DG147400 Rh6AG418400 Rh6BG424600 Rh6CG431900 Rh6DG417800
rosa_wichuraiana	Rw2G011120 Rw6G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	740
AccB1I	GGYRCC	1 cut(s)	740
AccBSI	CCGCTC	1 cut(s)	66
AccIII	TCCGGA	1 cut(s)	288
AciI	CCGC	4 cut(s)	45, 66, 404, 1012
AclI	AACGTT	1 cut(s)	492
AclWI	GGATC	1 cut(s)	44
AcsI	RAATTY	3 cut(s)	180, 482, 1056
AcuI	CTGAAG	1 cut(s)	1052
AdeI	CACNNNGTG	1 cut(s)	236
AfaI	GTAC	4 cut(s)	20, 41, 109, 742
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	869, 1061
AjnI	CCWGG	2 cut(s)	445, 798
AluBI	AGCT	4 cut(s)	399, 713, 816, 914
AluI	AGCT	4 cut(s)	399, 713, 816, 914
Alw21I	GWGCWC	3 cut(s)	36, 615, 916
AlwI	GGATC	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	288
AoxI	GGCC	2 cut(s)	578, 827
ApeKI	GCWGC	1 cut(s)	935
ApoI	RAATTY	3 cut(s)	180, 482, 1056
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
Asp700I	GAANNNNTTC	2 cut(s)	642, 1026
Asp718I	GGTACC	1 cut(s)	740
AspS9I	GGNCC	1 cut(s)	578
AsuC2I	CCSGG	2 cut(s)	172, 234
AsuHPI	GGTGA	2 cut(s)	461, 814
AsuII	TTCGAA	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	740
BanII	GRGCYC	1 cut(s)	916
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	3 cut(s)	36, 615, 916
BbvI	GCAGC	1 cut(s)	922
BccI	CCATC	2 cut(s)	19, 754
BciT130I	CCWGG	2 cut(s)	447, 800
BcnI	CCSGG	2 cut(s)	172, 234
BfaI	CTAG	5 cut(s)	467, 752, 785, 825, 980
BfmI	CTRYAG	1 cut(s)	297
BglII	AGATCT	1 cut(s)	654
BisI	GCNGC	4 cut(s)	45, 404, 936, 1013
BlsI	GCNGC	4 cut(s)	46, 405, 937, 1014
Bme1390I	CCNGG	4 cut(s)	172, 234, 447, 800
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	1 cut(s)	742
BmrFI	CCNGG	4 cut(s)	172, 234, 447, 800
BmsI	GCATC	2 cut(s)	184, 322
BpmI	CTGGAG	1 cut(s)	782
Bpu14I	TTCGAA	1 cut(s)	116
BpuMI	CCSGG	2 cut(s)	172, 234
BsaBI	GATNNNNATC	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse8I	GATNNNNATC	1 cut(s)	54
BseAI	TCCGGA	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	447, 800
BseGI	GGATG	1 cut(s)	746
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseRI	GAGGAG	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	922
BseYI	CCCAGC	1 cut(s)	82
BshFI	GGCC	2 cut(s)	580, 829
BshNI	GGYRCC	1 cut(s)	740
BsiHKAI	GWGCWC	3 cut(s)	36, 615, 916
BsiSI	CCGG	3 cut(s)	172, 233, 289
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	580, 829
Bsp119I	TTCGAA	1 cut(s)	116
Bsp1286I	GDGCHC	3 cut(s)	36, 615, 916
Bsp13I	TCCGGA	1 cut(s)	288
Bsp143I	GATC	3 cut(s)	49, 654, 885
BspACI	CCGC	4 cut(s)	45, 66, 404, 1012
BspANI	GGCC	2 cut(s)	580, 829
BspEI	TCCGGA	1 cut(s)	288
BspLI	GGNNCC	1 cut(s)	742
BspPI	GGATC	1 cut(s)	44
BspT104I	TTCGAA	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	740
BsrBI	CCGCTC	1 cut(s)	66
BssMI	GATC	3 cut(s)	49, 654, 885
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	2 cut(s)	447, 800
Bst4CI	ACNGT	3 cut(s)	301, 314, 671
Bst6I	CTCTTC	1 cut(s)	242
BstAPI	GCANNNNNTGC	1 cut(s)	935
BstBI	TTCGAA	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	401, 582
BstEII	GGTNACC	1 cut(s)	383
BstF5I	GGATG	1 cut(s)	746
BstKTI	GATC	3 cut(s)	52, 657, 888
BstMBI	GATC	3 cut(s)	49, 654, 885
BstMWI	GCNNNNNNNGC	3 cut(s)	88, 412, 935
BstNI	CCWGG	2 cut(s)	447, 800
BstNSI	RCATGY	1 cut(s)	339
BstPI	GGTNACC	1 cut(s)	383
BstSCI	CCNGG	4 cut(s)	170, 232, 445, 798
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	922
BstX2I	RGATCY	1 cut(s)	654
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	654
BsuRI	GGCC	2 cut(s)	580, 829
BtsCI	GGATG	1 cut(s)	746
BtsIMutI	CAGTG	1 cut(s)	613
Cac8I	GCNNGC	2 cut(s)	401, 582
Cfr13I	GGNCC	1 cut(s)	578
CsiI	ACCWGGT	1 cut(s)	445
Csp6I	GTAC	4 cut(s)	19, 40, 108, 741
CviAII	CATG	2 cut(s)	336, 690
CviQI	GTAC	4 cut(s)	19, 40, 108, 741
DpnI	GATC	3 cut(s)	51, 656, 887
DpnII	GATC	3 cut(s)	49, 654, 885
DraIII	CACNNNGTG	1 cut(s)	236
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	914
Eco24I	GRGCYC	1 cut(s)	916
Eco53kI	GAGCTC	1 cut(s)	914
Eco57I	CTGAAG	1 cut(s)	1052
Eco91I	GGTNACC	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	914
EcoO65I	GGTNACC	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	445, 798
EcoT22I	ATGCAT	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	916
FaeI	CATG	2 cut(s)	339, 693
FatI	CATG	2 cut(s)	335, 689
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	4 cut(s)	45, 404, 936, 1013
FokI	GGATG	1 cut(s)	733
FriOI	GRGCYC	1 cut(s)	916
Fsp4HI	GCNGC	4 cut(s)	45, 404, 936, 1013
FspBI	CTAG	5 cut(s)	467, 752, 785, 825, 980
GluI	GCNGC	4 cut(s)	45, 404, 936, 1013
GsaI	CCCAGC	1 cut(s)	86
GsuI	CTGGAG	1 cut(s)	782
HaeIII	GGCC	2 cut(s)	580, 829
HapII	CCGG	3 cut(s)	172, 233, 289
Hin1II	CATG	2 cut(s)	339, 693
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	397
HinfI	GANTC	5 cut(s)	118, 266, 624, 679, 942
HpaII	CCGG	3 cut(s)	172, 233, 289
HphI	GGTGA	2 cut(s)	461, 814
Hpy166II	GTNNAC	2 cut(s)	110, 496
Hpy188I	TCNGA	7 cut(s)	63, 135, 213, 594, 637, 918, 1032
Hpy188III	TCNNGA	4 cut(s)	289, 647, 811, 980
Hpy8I	GTNNAC	2 cut(s)	110, 496
HpyAV	CCTTC	5 cut(s)	368, 424, 589, 899, 988
HpyCH4III	ACNGT	3 cut(s)	301, 314, 671
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	7 cut(s)	256, 308, 335, 458, 664, 929, 964
HpyF10VI	GCNNNNNNNGC	3 cut(s)	88, 412, 935
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	2 cut(s)	339, 693
Kpn2I	TCCGGA	1 cut(s)	288
KpnI	GGTACC	1 cut(s)	744
Kzo9I	GATC	3 cut(s)	49, 654, 885
LmnI	GCTCC	2 cut(s)	31, 63
Lsp1109I	GCAGC	1 cut(s)	922
LweI	GCATC	2 cut(s)	184, 322
MabI	ACCWGGT	1 cut(s)	445
MaeI	CTAG	5 cut(s)	467, 752, 785, 825, 980
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	2 cut(s)	148, 383
MalI	GATC	3 cut(s)	51, 656, 887
MbiI	CCGCTC	1 cut(s)	66
MboI	GATC	3 cut(s)	49, 654, 885
MflI	RGATCY	1 cut(s)	654
MhlI	GDGCHC	3 cut(s)	36, 615, 916
MluCI	AATT	9 cut(s)	180, 354, 453, 482, 639, 858, 1006, 1036, 1056
MlyI	GAGTC	1 cut(s)	936
MmeI	TCCRAC	2 cut(s)	243, 348
MnlI	CCTC	5 cut(s)	22, 171, 493, 726, 976
Mph1103I	ATGCAT	1 cut(s)	337
MroI	TCCGGA	1 cut(s)	288
MroXI	GAANNNNTTC	2 cut(s)	642, 1026
MseI	TTAA	3 cut(s)	303, 441, 999
MslI	CAYNNNNRTG	1 cut(s)	509
MspI	CCGG	3 cut(s)	172, 233, 289
MspR9I	CCNGG	4 cut(s)	172, 234, 447, 800
Mva1269I	GAATGC	1 cut(s)	258
MvaI	CCWGG	2 cut(s)	447, 800
MwoI	GCNNNNNNNGC	3 cut(s)	88, 412, 935
NciI	CCSGG	2 cut(s)	172, 234
NdeII	GATC	3 cut(s)	49, 654, 885
NlaIII	CATG	2 cut(s)	339, 693
NlaIV	GGNNCC	1 cut(s)	742
NsiI	ATGCAT	1 cut(s)	337
NspI	RCATGY	1 cut(s)	339
NspV	TTCGAA	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	1 cut(s)	258
PdmI	GAANNNNTTC	2 cut(s)	642, 1026
PfeI	GAWTC	4 cut(s)	118, 266, 624, 679
PflFI	GACNNNGTC	2 cut(s)	500, 602
PkrI	GCNGC	4 cut(s)	46, 405, 937, 1014
PleI	GAGTC	1 cut(s)	936
PpsI	GAGTC	1 cut(s)	936
Psp124BI	GAGCTC	1 cut(s)	916
Psp1406I	AACGTT	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	445, 798
PspEI	GGTNACC	1 cut(s)	383
PspFI	CCCAGC	1 cut(s)	82
PspGI	CCWGG	2 cut(s)	445, 798
PspN4I	GGNNCC	1 cut(s)	742
PspPI	GGNCC	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	654
PsyI	GACNNNGTC	2 cut(s)	500, 602
RsaI	GTAC	4 cut(s)	20, 41, 109, 742
RsaNI	GTAC	4 cut(s)	19, 40, 108, 741
RseI	CAYNNNNRTG	1 cut(s)	509
SacI	GAGCTC	1 cut(s)	916
SaqAI	TTAA	3 cut(s)	303, 441, 999
SatI	GCNGC	4 cut(s)	45, 404, 936, 1013
Sau3AI	GATC	3 cut(s)	49, 654, 885
Sau96I	GGNCC	1 cut(s)	578
SchI	GAGTC	1 cut(s)	936
ScrFI	CCNGG	4 cut(s)	172, 234, 447, 800
SduI	GDGCHC	3 cut(s)	36, 615, 916
SexAI	ACCWGGT	1 cut(s)	445
SfaNI	GCATC	2 cut(s)	184, 322
SfcI	CTRYAG	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	509
Sse9I	AATT	9 cut(s)	180, 354, 453, 482, 639, 858, 1006, 1036, 1056
SsiI	CCGC	4 cut(s)	45, 66, 404, 1012
SspI	AATATT	1 cut(s)	780
SspMI	CTAG	5 cut(s)	467, 752, 785, 825, 980
SstI	GAGCTC	1 cut(s)	916
StyD4I	CCNGG	4 cut(s)	170, 232, 445, 798
TaaI	ACNGT	3 cut(s)	301, 314, 671
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	5 cut(s)	12, 116, 178, 646, 940
TasI	AATT	9 cut(s)	180, 354, 453, 482, 639, 858, 1006, 1036, 1056
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	3 cut(s)	47, 406, 1015
TfiI	GAWTC	4 cut(s)	118, 266, 624, 679
Tru1I	TTAA	3 cut(s)	303, 441, 999
Tru9I	TTAA	3 cut(s)	303, 441, 999
TscAI	CASTG	1 cut(s)	613
TseI	GCWGC	1 cut(s)	935
TspDTI	ATGAA	4 cut(s)	293, 375, 437, 678
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	1 cut(s)	613
Tth111I	GACNNNGTC	2 cut(s)	500, 602
XapI	RAATTY	3 cut(s)	180, 482, 1056
XbaI	TCTAGA	1 cut(s)	979
XceI	RCATGY	1 cut(s)	339
XmnI	GAANNNNTTC	2 cut(s)	642, 1026
XspI	CTAG	5 cut(s)	467, 752, 785, 825, 980
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.