Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004575

Physical Location & Seq

Genomic Coordinates Forward (+)

16253930 .. 16262553

Gene Structure 8624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012203

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGAAAGTCAACATATGGAACAAGGGAAAAGCTATTGTATACTTGGATGATCTAAGTGACCCATCAATTTACAACGAAGATTTTAATGAAATCGGTGATGCCAGGCAATGCAGTTCGTTTGTGACAAGGGTTAATCCTGTCAAAGCTGGTTTGGAGAGTATAAACCCCCCTCTTAAGCCAAGAAAGGTGAGTTCTGGAAAATCGGAAGAAGGCAGTGCCAGCCAGAAGTTCATAAGAGAACTTCGGGGAGAGTCGGAACTTGCGGTGTCTCCGGCATTTCTCGTAGCCGGAACTTTGGCCGGAGTTGTGAGAACTTGGCACATAGCCCAAGTTGGAGGGGTTGGAGGAATGCAACTCAGAGAAAGTCGGAAAACTAGGGGACCTGTGCGACATAGAGATGGAAATGAGGAACATAAAAGTAGGGAACAATATGTTTTTGAGGACTTTGACTCGTTTATAGCTGATACTGATGCTTCATGCGATGATGATGACTCATCGGATGGAGAGGACTCATCTGACGGAGAACAGGAGAGCCTCGCTCTAGTTCATGAGCATCGGTATGTGGCTGTTTTGGGGAAGCCCAATGTGGGAAAGAGTACTCTTTCAAACCAAATGGTTGGTCAGAAATTGTCAATTGTTACTGATAAGCCTCAAACTACAAGGCATAGAATTCTTGGTATATGTTCTGGCTCAGACCATCAGATGATACTTTATGACACACCCGGTGTTATTGAGAAGAAAATGCACAAGTTGGATACTATGATGATGAAGAATGTTTGCAGCGCCGTTATTAATGCGGATTGTGTACTTGTTCTTGTTGATGCATGTAAAGTGCCTGAAAATATTAATGAAGTGGTGGAAGAAGGTGTGGGTAACCAGACAGATAGGCTGCCGCCTACTTTGCCGGTCATGAATAAGAAAGATTTGATTAAGCCAGGTGAAATTGCAAAGAAACTAGAGTGGTATGAGAAGTTTACAAATGTTGATGAGGTCATACCAGTGAGTGCCAAACACGGTCAGGGAGTGGAAGACGTGAAGCAGTGGATATTGTCAATACTTCCCTTTGGCCCAGCTTATTATCCAAAGGACATCGTAAGTGAGCACCCAGAAAGATTTTTTGTATCAGAAATTGTGAGAGAAAAGATCTTTATGCAATACAGGAAAGGGATTCCTTATGCATGTCAGGTGAATGTTGTGAGCTACAAAACTAGGCCAGCAGCAAAAGATTTTATACAAGTGGAAATCGTTGTTGAGAAAAATTCACAGAAAATCATCCTTATTGGAAAAGATGGGAGAGCTTTGAAACTACTTGCAACGGCATCGCAGCTGGACATAGAAGATTTCTTACAGAAGAAAGTTTTTCTAGAGGTTGAGGTGAAGGTTAAAGAGAACTGGCGGCAAGATGAAGGGCTCTTGAAGAACTATGACTATGGGGGTCAAATTCAAACATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

485

Amino Acids

54.15

Weight (kDa)

5.72

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	188 - 306	9.9e-23	50S ribosome-binding GTPase
FeoB_N	PF02421	188 - 347	4.2e-11	Ferrous iron transport protein B
KH_2	PF07650	390 - 466	4.7e-14	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66470 AT5G66470
fragaria_vesca	FvH4_1g12880 FvH4_2g39510
malus_domestica	MD02G1143800.v1.1 MD15G1257100.v1.1
prunus_persica	Prupe.7G157900_v2.0.a1 Prupe.7G157900_v2.0.a1
pyrus_communis	pycom02g11370 pycom15g22500
rosa_chinensis	RchiOBHm_Chr2g0100961 RchiOBHm_Chr6g0301441
rosa_laevigata	RLG00000011253 RLG00000012203 RLG00000017029
rosa_multiflora	Rmu_sc0014417.1_g000011
rosa_roxburghii	Rroxscaffold_2G00141710 Rroxscaffold_7G00166820
rosa_rugosa	Rorug02G0094100 Rorug02G0094200 Rorug06G0304700
rosa_samantha	Rh2AG141700 Rh2BG146900 Rh2CG148200 Rh2DG147400 Rh6AG418400 Rh6BG424600 Rh6CG431900 Rh6DG417800
rosa_wichuraiana	Rw2G011120 Rw6G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AciI	CCGC	4 cut(s)	263, 797, 893, 1396
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	3 cut(s)	669, 1258, 1440
AdeI	CACNNNGTG	1 cut(s)	725
AfaI	GTAC	2 cut(s)	598, 807
AfiI	CCNNNNNNNGG	1 cut(s)	587
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	4 cut(s)	606, 1303, 1417, 1445
AjiI	CACGTC	1 cut(s)	1033
AjnI	CCWGG	2 cut(s)	101, 934
AluBI	AGCT	7 cut(s)	32, 146, 461, 1073, 1200, 1298, 1327
AluI	AGCT	7 cut(s)	32, 146, 461, 1073, 1200, 1298, 1327
Alw21I	GWGCWC	1 cut(s)	1104
Alw26I	GTCTC	1 cut(s)	273
AoxI	GGCC	3 cut(s)	297, 1066, 1211
ApeKI	GCWGC	4 cut(s)	780, 889, 1217, 1324
ApoI	RAATTY	3 cut(s)	669, 1258, 1440
ArsI	GACNNNNNNTTYG	2 cut(s)	604, 636
AseI	ATTAAT	2 cut(s)	792, 846
AspLEI	GCGC	1 cut(s)	785
AspS9I	GGNCC	2 cut(s)	380, 1067
AsuC2I	CCSGG	1 cut(s)	723
AsuHPI	GGTGA	5 cut(s)	107, 199, 950, 1198, 1387
AvaII	GGWCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	1413
BarI	GAAGNNNNNNTAC	2 cut(s)	1329, 1361
BbsI	GAAGAC	1 cut(s)	1035
Bbv12I	GWGCWC	1 cut(s)	1104
BbvI	GCAGC	4 cut(s)	792, 876, 1229, 1336
BccI	CCATC	5 cut(s)	70, 392, 494, 705, 1283
BceAI	ACGGC	2 cut(s)	770, 1332
BcgI	CGANNNNNNTGC	2 cut(s)	1302, 1336
BciT130I	CCWGG	2 cut(s)	103, 936
BciVI	GTATCC	1 cut(s)	748
BcnI	CCSGG	1 cut(s)	723
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	5 cut(s)	375, 542, 956, 1209, 1364
BfoI	RGCGCY	1 cut(s)	786
BfrI	CTTAAG	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	748
BglII	AGATCT	1 cut(s)	1143
BisI	GCNGC	6 cut(s)	781, 890, 893, 1218, 1325, 1397
BlsI	GCNGC	6 cut(s)	782, 891, 894, 1219, 1326, 1398
BmcAI	AGTACT	1 cut(s)	598
Bme1390I	CCNGG	3 cut(s)	103, 723, 936
Bme18I	GGWCC	1 cut(s)	380
BmgBI	CACGTC	1 cut(s)	1033
BmgT120I	GGNCC	2 cut(s)	380, 1067
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	3 cut(s)	103, 723, 936
BmsI	GCATC	5 cut(s)	88, 460, 562, 811, 1328
BpiI	GAAGAC	1 cut(s)	1035
BplI	GAGNNNNNCTC	2 cut(s)	523, 555
BpuMI	CCSGG	1 cut(s)	723
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse118I	RCCGGY	1 cut(s)	904
Bse1I	ACTGG	2 cut(s)	998, 1397
Bse3DI	GCAATG	1 cut(s)	113
BseBI	CCWGG	2 cut(s)	103, 936
BseGI	GGATG	3 cut(s)	52, 505, 1272
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseMI	GCAATG	1 cut(s)	113
BseMII	CTCAG	2 cut(s)	370, 705
BseNI	ACTGG	2 cut(s)	998, 1397
BseXI	GCAGC	4 cut(s)	792, 876, 1229, 1336
BseYI	CCCAGC	1 cut(s)	1069
BshFI	GGCC	3 cut(s)	299, 1068, 1213
BsiHKAI	GWGCWC	1 cut(s)	1104
BsiSI	CCGG	5 cut(s)	272, 288, 300, 723, 905
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmAI	GTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	393
BsmI	GAATGC	1 cut(s)	354
BsnI	GGCC	3 cut(s)	299, 1068, 1213
Bsp1286I	GDGCHC	2 cut(s)	1104, 1413
Bsp143I	GATC	2 cut(s)	49, 1143
BspACI	CCGC	4 cut(s)	263, 797, 893, 1396
BspANI	GGCC	3 cut(s)	299, 1068, 1213
BspCNI	CTCAG	2 cut(s)	369, 704
BspHI	TCATGA	2 cut(s)	547, 909
BspLI	GGNNCC	1 cut(s)	381
BspTI	CTTAAG	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	904
BsrI	ACTGG	2 cut(s)	998, 1397
BssAI	RCCGGY	1 cut(s)	904
BssMI	GATC	2 cut(s)	49, 1143
BssNAI	GTATAC	1 cut(s)	40
Bst1107I	GTATAC	1 cut(s)	40
Bst2UI	CCWGG	2 cut(s)	103, 936
Bst4CI	ACNGT	1 cut(s)	1016
BstAFI	CTTAAG	1 cut(s)	173
BstC8I	GCNNGC	2 cut(s)	220, 1215
BstDEI	CTNAG	3 cut(s)	53, 356, 691
BstEII	GGTNACC	1 cut(s)	872
BstF5I	GGATG	3 cut(s)	52, 505, 1272
BstH2I	RGCGCY	1 cut(s)	786
BstHHI	GCGC	1 cut(s)	785
BstKTI	GATC	2 cut(s)	52, 1146
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	2 cut(s)	49, 1143
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 901
BstNI	CCWGG	2 cut(s)	103, 936
BstNSI	RCATGY	2 cut(s)	828, 1182
BstPI	GGTNACC	1 cut(s)	872
BstSCI	CCNGG	3 cut(s)	101, 721, 934
BstV1I	GCAGC	4 cut(s)	792, 876, 1229, 1336
BstV2I	GAAGAC	1 cut(s)	1035
BstX2I	RGATCY	1 cut(s)	1143
BstXI	CCANNNNNNTGG	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	1143
BstZ17I	GTATAC	1 cut(s)	40
BsuI	GTATCC	1 cut(s)	748
BsuRI	GGCC	3 cut(s)	299, 1068, 1213
BtgZI	GCGATG	2 cut(s)	495, 1305
BtrI	CACGTC	1 cut(s)	1033
BtsCI	GGATG	3 cut(s)	52, 505, 1272
BtsI	GCAGTG	2 cut(s)	220, 1046
BtsIMutI	CAGTG	3 cut(s)	220, 1005, 1046
Cac8I	GCNNGC	2 cut(s)	220, 1215
CciI	TCATGA	2 cut(s)	547, 909
CfoI	GCGC	1 cut(s)	785
Cfr10I	RCCGGY	1 cut(s)	904
Cfr13I	GGNCC	2 cut(s)	380, 1067
Csp6I	GTAC	2 cut(s)	597, 806
CviAII	CATG	5 cut(s)	477, 548, 825, 910, 1179
CviQI	GTAC	2 cut(s)	597, 806
DdeI	CTNAG	3 cut(s)	53, 356, 691
DpnI	GATC	2 cut(s)	51, 1145
DpnII	GATC	2 cut(s)	49, 1143
DraIII	CACNNNGTG	1 cut(s)	725
EaeI	YGGCCR	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	1413
Eco47I	GGWCC	1 cut(s)	380
Eco91I	GGTNACC	1 cut(s)	872
EcoO109I	RGGNCCY	1 cut(s)	380
EcoO65I	GGTNACC	1 cut(s)	872
EcoRI	GAATTC	1 cut(s)	669
EcoRII	CCWGG	2 cut(s)	101, 934
EcoT22I	ATGCAT	2 cut(s)	826, 1180
EcoT38I	GRGCYC	1 cut(s)	1413
FaeI	CATG	5 cut(s)	480, 551, 828, 913, 1182
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	5 cut(s)	476, 547, 824, 909, 1178
FauNDI	CATATG	1 cut(s)	14
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	6 cut(s)	781, 890, 893, 1218, 1325, 1397
FokI	GGATG	3 cut(s)	59, 512, 1259
FriOI	GRGCYC	1 cut(s)	1413
Fsp4HI	GCNGC	6 cut(s)	781, 890, 893, 1218, 1325, 1397
FspBI	CTAG	5 cut(s)	375, 542, 956, 1209, 1364
GlaI	GCGC	1 cut(s)	784
GluI	GCNGC	6 cut(s)	781, 890, 893, 1218, 1325, 1397
GsaI	CCCAGC	1 cut(s)	1073
HaeII	RGCGCY	1 cut(s)	786
HaeIII	GGCC	3 cut(s)	299, 1068, 1213
HapII	CCGG	5 cut(s)	272, 288, 300, 723, 905
HhaI	GCGC	1 cut(s)	785
Hin1II	CATG	5 cut(s)	480, 551, 828, 913, 1182
Hin6I	GCGC	1 cut(s)	783
HinP1I	GCGC	1 cut(s)	783
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	5 cut(s)	251, 449, 491, 509, 1168
HpaII	CCGG	5 cut(s)	272, 288, 300, 723, 905
HphI	GGTGA	5 cut(s)	107, 199, 950, 1198, 1387
Hpy166II	GTNNAC	4 cut(s)	10, 40, 806, 975
Hpy188III	TCNNGA	5 cut(s)	195, 548, 910, 1364, 1414
Hpy8I	GTNNAC	4 cut(s)	10, 40, 806, 975
HpyAV	CCTTC	4 cut(s)	203, 857, 1372, 1400
HpyCH4III	ACNGT	1 cut(s)	1016
HpyCH4IV	ACGT	1 cut(s)	1032
HpyCH4V	TGCA	9 cut(s)	111, 352, 745, 780, 824, 947, 1153, 1178, 1313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 901
HpyF3I	CTNAG	3 cut(s)	53, 356, 691
HpySE526I	ACGT	1 cut(s)	1032
Hsp92II	CATG	5 cut(s)	480, 551, 828, 913, 1182
HspAI	GCGC	1 cut(s)	783
Kzo9I	GATC	2 cut(s)	49, 1143
Lsp1109I	GCAGC	4 cut(s)	792, 876, 1229, 1336
LweI	GCATC	5 cut(s)	88, 460, 562, 811, 1328
MaeI	CTAG	5 cut(s)	375, 542, 956, 1209, 1364
MaeII	ACGT	1 cut(s)	1032
MaeIII	GTNAC	4 cut(s)	56, 121, 637, 872
MalI	GATC	2 cut(s)	51, 1145
MboI	GATC	2 cut(s)	49, 1143
MboII	GAAGA	9 cut(s)	89, 218, 748, 781, 872, 1040, 1349, 1363, 1429
MfeI	CAATTG	1 cut(s)	633
MflI	RGATCY	1 cut(s)	1143
MhlI	GDGCHC	2 cut(s)	1104, 1413
MluCI	AATT	8 cut(s)	66, 626, 633, 669, 942, 1128, 1258, 1440
MlyI	GAGTC	4 cut(s)	260, 443, 485, 503
MmeI	TCCRAC	5 cut(s)	234, 313, 322, 347, 732
Mph1103I	ATGCAT	2 cut(s)	826, 1180
MseI	TTAA	7 cut(s)	84, 132, 174, 792, 846, 930, 1383
MslI	CAYNNNNRTG	3 cut(s)	396, 558, 998
MspA1I	CMGCKG	1 cut(s)	1327
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	5 cut(s)	272, 288, 300, 723, 905
MspR9I	CCNGG	3 cut(s)	103, 723, 936
MunI	CAATTG	1 cut(s)	633
Mva1269I	GAATGC	1 cut(s)	354
MvaI	CCWGG	2 cut(s)	103, 936
MwoI	GCNNNNNNNGC	2 cut(s)	219, 901
NciI	CCSGG	1 cut(s)	723
NdeI	CATATG	1 cut(s)	14
NdeII	GATC	2 cut(s)	49, 1143
NlaIII	CATG	5 cut(s)	480, 551, 828, 913, 1182
NlaIV	GGNNCC	1 cut(s)	381
NmuCI	GTSAC	2 cut(s)	56, 121
NsiI	ATGCAT	2 cut(s)	826, 1180
NspI	RCATGY	2 cut(s)	828, 1182
PagI	TCATGA	2 cut(s)	547, 909
PctI	GAATGC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	1168
PkrI	GCNGC	6 cut(s)	782, 891, 894, 1219, 1326, 1398
PleI	GAGTC	4 cut(s)	259, 443, 485, 503
PpsI	GAGTC	4 cut(s)	259, 443, 485, 503
PpuMI	RGGWCCY	1 cut(s)	380
PshBI	ATTAAT	2 cut(s)	792, 846
Psp5II	RGGWCCY	1 cut(s)	380
Psp6I	CCWGG	2 cut(s)	101, 934
PspEI	GGTNACC	1 cut(s)	872
PspFI	CCCAGC	1 cut(s)	1069
PspGI	CCWGG	2 cut(s)	101, 934
PspN4I	GGNNCC	1 cut(s)	381
PspPI	GGNCC	2 cut(s)	380, 1067
PspPPI	RGGWCCY	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	1143
PvuII	CAGCTG	1 cut(s)	1327
RsaI	GTAC	2 cut(s)	598, 807
RsaNI	GTAC	2 cut(s)	597, 806
RseI	CAYNNNNRTG	3 cut(s)	396, 558, 998
SaqAI	TTAA	7 cut(s)	84, 132, 174, 792, 846, 930, 1383
SatI	GCNGC	6 cut(s)	781, 890, 893, 1218, 1325, 1397
Sau3AI	GATC	2 cut(s)	49, 1143
Sau96I	GGNCC	2 cut(s)	380, 1067
ScaI	AGTACT	1 cut(s)	598
SchI	GAGTC	4 cut(s)	260, 443, 485, 503
ScrFI	CCNGG	3 cut(s)	103, 723, 936
SduI	GDGCHC	2 cut(s)	1104, 1413
SfaNI	GCATC	5 cut(s)	88, 460, 562, 811, 1328
SinI	GGWCC	1 cut(s)	380
SmiMI	CAYNNNNRTG	3 cut(s)	396, 558, 998
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	8 cut(s)	66, 626, 633, 669, 942, 1128, 1258, 1440
SsiI	CCGC	4 cut(s)	263, 797, 893, 1396
SspI	AATATT	1 cut(s)	844
SspMI	CTAG	5 cut(s)	375, 542, 956, 1209, 1364
StyD4I	CCNGG	3 cut(s)	101, 721, 934
TaaI	ACNGT	1 cut(s)	1016
TaiI	ACGT	1 cut(s)	1035
TasI	AATT	8 cut(s)	66, 626, 633, 669, 942, 1128, 1258, 1440
TatI	WGTACW	2 cut(s)	596, 805
TauI	GCSGC	2 cut(s)	895, 1399
TfiI	GAWTC	1 cut(s)	1168
Tru1I	TTAA	7 cut(s)	84, 132, 174, 792, 846, 930, 1383
Tru9I	TTAA	7 cut(s)	84, 132, 174, 792, 846, 930, 1383
TscAI	CASTG	3 cut(s)	220, 1005, 1046
TseFI	GTSAC	2 cut(s)	56, 121
TseI	GCWGC	4 cut(s)	780, 889, 1217, 1324
Tsp45I	GTSAC	2 cut(s)	56, 121
TspDTI	ATGAA	9 cut(s)	17, 102, 220, 465, 536, 782, 864, 926, 1419
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	3 cut(s)	220, 1005, 1046
Vha464I	CTTAAG	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	380
VspI	ATTAAT	2 cut(s)	792, 846
XapI	RAATTY	3 cut(s)	669, 1258, 1440
XbaI	TCTAGA	1 cut(s)	1363
XceI	RCATGY	2 cut(s)	828, 1182
XmiI	GTMKAC	1 cut(s)	39
XspI	CTAG	5 cut(s)	375, 542, 956, 1209, 1364
ZrmI	AGTACT	1 cut(s)	598
Zsp2I	ATGCAT	2 cut(s)	826, 1180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.