Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004575

Physical Location & Seq

Genomic Coordinates Reverse (-)

7116322 .. 7119339

Gene Structure 3018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g12880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGAGCTAGCTCTGCACAGGTCCGCAACTCTCCCCAGAGACTATTCCCTCTCCCATTACTCCAATTCCAAATTCCTCACTACCCAAAACCACCACCACCACAACAACCGCTTCCCTCGTCCCACTAGAAAACCCAAATTCCACGCCAGAATTCCAACCACAATCGCCACGTGGAAACTCTCCTCCGCCGCAAAACCACCGCTCTGGATCGCCGAGCAAGAAGAAGACGACTCGGAGTACTCCTATTCCGACGAAGACTCCGCGCTGTTGTCTCTGAGTGAGAAGCCGGACAGGAACATGGCTTTGCTAGATGACTACGAGCTGGAGGAGCTTGACTATGCTACTGACCCTAACCATAGGAGTGGGTATGTGGCTGTTCTGGGGAAGCCCAATGTGGGAAAGAGCACTCTCTCAAACCAAATGGTGGGTCAGAAATTGTCAATTGTTACTGATAAGCCGCAAACTACGAGGCATAGAATTCTTGGTATATGTTCTGGCTCAGACTATCAGATGATACTTTATGACACACCAGGTGTTATTGAGAAGAAAATGCACAAATTGGATACGATGATGATGAAGAACGTGCGCAGCGCTGTTATTAACGCGGATTGTGTACTTGTTCTTGTTGATGCATGTAAAGTGCCTGAAAATATTAATGAAGTGGTGGAAGAAGGTGTGGGTAACCAGACAGATAGCCTGCCTCCGACTTTGCTGGTCATGAATAAGAAAGATTTGATAAAGCCAGGTGAAATTGCAAAGAAAGTAGAGTGGTATGAGAAGTTTACAAATGTTGATGAGGTCATACCAGTGAGTGCCAAACACGGTCAGGGAGTGGAAGACGTGAAGCAGTGGATATTGTCAAAACTTCCCTTCGGCCCAGCTTACTATCCAAAGGACATCGTAAGTGAGCACCCGGAGAGATTTTTTGTATCAGAGATTGTGAGAGAAAAGATCTTTATGCAATACAGGAAAGAGATTCCTTATGCATGTCAGGTGAATGTCGTGAGCTACAAAAGTAGGCCAGCTGCAAAAGATTTTATACAAGTGGAAATCGTTGTTGAGAAAAATTCACAGAAAATCATCCTTATCGGAAAAGATGGGAGAGCTTTGAAACTACTTGCAACAGCTTCACGGCTTGATATAGAAGATTTCTTACAGAAAAAAGTTTTTCTAGAGGTTGAGGTGAAGGTTAAAGAGAATTGGCGGCAAGATGAGGGGCTCTTGAAGAATTATGGGTATGGGGGTCAAATTCAAGCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

421

Amino Acids

47.83

Weight (kDa)

6.66

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	124 - 242	1.4e-23	50S ribosome-binding GTPase
FeoB_N	PF02421	124 - 283	9.1e-12	Ferrous iron transport protein B
KH_2	PF07650	325 - 402	1e-14	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66470 AT5G66470
fragaria_vesca	FvH4_1g12880 FvH4_2g39510
malus_domestica	MD02G1143800.v1.1 MD15G1257100.v1.1
prunus_persica	Prupe.7G157900_v2.0.a1 Prupe.7G157900_v2.0.a1
pyrus_communis	pycom02g11370 pycom15g22500
rosa_chinensis	RchiOBHm_Chr2g0100961 RchiOBHm_Chr6g0301441
rosa_laevigata	RLG00000011253 RLG00000012203 RLG00000017029
rosa_multiflora	Rmu_sc0014417.1_g000011
rosa_roxburghii	Rroxscaffold_2G00141710 Rroxscaffold_7G00166820
rosa_rugosa	Rorug02G0094100 Rorug02G0094200 Rorug06G0304700
rosa_samantha	Rh2AG141700 Rh2BG146900 Rh2CG148200 Rh2DG147400 Rh6AG418400 Rh6BG424600 Rh6CG431900 Rh6DG417800
rosa_wichuraiana	Rw2G011120 Rw6G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	587
AccB7I	CCANNNNNTGG	1 cut(s)	424
AccBSI	CCGCTC	1 cut(s)	202
AccII	CGCG	2 cut(s)	263, 605
AciI	CCGC	9 cut(s)	24, 109, 186, 189, 200, 261, 458, 605, 1204
AclWI	GGATC	1 cut(s)	215
AcsI	RAATTY	6 cut(s)	71, 137, 150, 477, 1066, 1248
AcvI	CACGTG	1 cut(s)	171
AdeI	CACNNNGTG	1 cut(s)	533
AfaI	GTAC	2 cut(s)	239, 615
AfeI	AGCGCT	1 cut(s)	592
AfiI	CCNNNNNNNGG	2 cut(s)	395, 424
AgsI	TTSAA	3 cut(s)	1111, 1225, 1253
AjiI	CACGTC	1 cut(s)	841
AjnI	CCWGG	2 cut(s)	529, 742
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	9 cut(s)	7, 11, 322, 331, 881, 1008, 1025, 1106, 1127
AluI	AGCT	9 cut(s)	7, 11, 322, 331, 881, 1008, 1025, 1106, 1127
Alw21I	GWGCWC	2 cut(s)	407, 912
Alw26I	GTCTC	2 cut(s)	33, 276
AlwI	GGATC	1 cut(s)	215
Aor51HI	AGCGCT	1 cut(s)	592
AoxI	GGCC	2 cut(s)	874, 1019
ApeKI	GCWGC	2 cut(s)	588, 1025
ApoI	RAATTY	6 cut(s)	71, 137, 150, 477, 1066, 1248
ArsI	GACNNNNNNTTYG	2 cut(s)	412, 444
AseI	ATTAAT	1 cut(s)	654
AspLEI	GCGC	3 cut(s)	265, 588, 593
AspS9I	GGNCC	2 cut(s)	21, 875
AsuC2I	CCSGG	1 cut(s)	914
AsuHPI	GGTGA	3 cut(s)	758, 1006, 1195
AsuNHI	GCTAGC	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	1221
BarI	GAAGNNNNNNTAC	2 cut(s)	1137, 1169
BbrPI	CACGTG	1 cut(s)	171
BbsI	GAAGAC	3 cut(s)	231, 261, 843
Bbv12I	GWGCWC	2 cut(s)	407, 912
BbvI	GCAGC	2 cut(s)	600, 1012
BccI	CCATC	1 cut(s)	1091
BceAI	ACGGC	1 cut(s)	1148
BciT130I	CCWGG	2 cut(s)	531, 744
BciVI	GTATCC	1 cut(s)	556
BcnI	CCSGG	1 cut(s)	914
BcoDI	GTCTC	2 cut(s)	33, 276
BfaI	CTAG	4 cut(s)	8, 126, 308, 1172
BfoI	RGCGCY	1 cut(s)	594
BfuI	GTATCC	1 cut(s)	556
BglII	AGATCT	1 cut(s)	951
BisI	GCNGC	5 cut(s)	189, 458, 589, 1026, 1205
BlsI	GCNGC	5 cut(s)	190, 459, 590, 1027, 1206
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	3 cut(s)	531, 744, 914
Bme18I	GGWCC	1 cut(s)	21
BmgBI	CACGTC	1 cut(s)	841
BmgT120I	GGNCC	2 cut(s)	21, 875
BmrFI	CCNGG	3 cut(s)	531, 744, 914
BmsI	GCATC	1 cut(s)	619
BmtI	GCTAGC	1 cut(s)	11
BpiI	GAAGAC	3 cut(s)	231, 261, 843
BpmI	CTGGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	914
BsaAI	YACGTR	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	395, 424
Bse1I	ACTGG	1 cut(s)	806
BseBI	CCWGG	2 cut(s)	531, 744
BseGI	GGATG	1 cut(s)	1080
BseLI	CCNNNNNNNGG	2 cut(s)	395, 424
BseMII	CTCAG	2 cut(s)	266, 513
BseNI	ACTGG	1 cut(s)	806
BseRI	GAGGAG	2 cut(s)	172, 341
BseXI	GCAGC	2 cut(s)	600, 1012
BseYI	CCCAGC	1 cut(s)	877
Bsh1236I	CGCG	2 cut(s)	263, 605
BshFI	GGCC	2 cut(s)	876, 1021
BsiHKAI	GWGCWC	2 cut(s)	407, 912
BsiSI	CCGG	2 cut(s)	287, 914
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	395, 424
BsmAI	GTCTC	2 cut(s)	33, 276
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	876, 1021
Bsp1286I	GDGCHC	3 cut(s)	407, 912, 1221
Bsp143I	GATC	2 cut(s)	207, 951
BspACI	CCGC	9 cut(s)	24, 109, 186, 189, 200, 261, 458, 605, 1204
BspANI	GGCC	2 cut(s)	876, 1021
BspCNI	CTCAG	2 cut(s)	267, 512
BspFNI	CGCG	2 cut(s)	263, 605
BspHI	TCATGA	1 cut(s)	717
BspOI	GCTAGC	1 cut(s)	11
BspPI	GGATC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	806
BssMI	GATC	2 cut(s)	207, 951
Bst2UI	CCWGG	2 cut(s)	531, 744
Bst4CI	ACNGT	1 cut(s)	824
BstBAI	YACGTR	1 cut(s)	171
BstC8I	GCNNGC	3 cut(s)	9, 698, 1023
BstDEI	CTNAG	2 cut(s)	275, 499
BstEII	GGTNACC	1 cut(s)	680
BstF5I	GGATG	1 cut(s)	1080
BstFNI	CGCG	2 cut(s)	263, 605
BstH2I	RGCGCY	1 cut(s)	594
BstHHI	GCGC	3 cut(s)	265, 588, 593
BstKTI	GATC	2 cut(s)	210, 954
BstMAI	GTCTC	2 cut(s)	33, 276
BstMBI	GATC	2 cut(s)	207, 951
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 328
BstNI	CCWGG	2 cut(s)	531, 744
BstNSI	RCATGY	2 cut(s)	636, 990
BstPI	GGTNACC	1 cut(s)	680
BstSCI	CCNGG	3 cut(s)	529, 742, 912
BstUI	CGCG	2 cut(s)	263, 605
BstV1I	GCAGC	2 cut(s)	600, 1012
BstV2I	GAAGAC	3 cut(s)	231, 261, 843
BstX2I	RGATCY	1 cut(s)	951
BstXI	CCANNNNNNTGG	2 cut(s)	204, 362
BstYI	RGATCY	1 cut(s)	951
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	2 cut(s)	876, 1021
BtrI	CACGTC	1 cut(s)	841
BtsCI	GGATG	1 cut(s)	1080
BtsI	GCAGTG	1 cut(s)	854
BtsIMutI	CAGTG	2 cut(s)	813, 854
Cac8I	GCNNGC	3 cut(s)	9, 698, 1023
CciI	TCATGA	1 cut(s)	717
CfoI	GCGC	3 cut(s)	265, 588, 593
Cfr13I	GGNCC	2 cut(s)	21, 875
CsiI	ACCWGGT	1 cut(s)	529
Csp6I	GTAC	2 cut(s)	238, 614
CviAII	CATG	4 cut(s)	298, 633, 718, 987
CviQI	GTAC	2 cut(s)	238, 614
DdeI	CTNAG	2 cut(s)	275, 499
DpnI	GATC	2 cut(s)	209, 953
DpnII	GATC	2 cut(s)	207, 951
DraIII	CACNNNGTG	1 cut(s)	533
EciI	GGCGGA	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	1221
Eco47I	GGWCC	1 cut(s)	21
Eco47III	AGCGCT	1 cut(s)	592
Eco72I	CACGTG	1 cut(s)	171
Eco91I	GGTNACC	1 cut(s)	680
EcoO65I	GGTNACC	1 cut(s)	680
EcoRI	GAATTC	2 cut(s)	150, 477
EcoRII	CCWGG	2 cut(s)	529, 742
EcoT22I	ATGCAT	2 cut(s)	634, 988
EcoT38I	GRGCYC	1 cut(s)	1221
FaeI	CATG	4 cut(s)	301, 636, 721, 990
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	4 cut(s)	297, 632, 717, 986
Fnu4HI	GCNGC	5 cut(s)	189, 458, 589, 1026, 1205
FokI	GGATG	1 cut(s)	1067
FriOI	GRGCYC	1 cut(s)	1221
Fsp4HI	GCNGC	5 cut(s)	189, 458, 589, 1026, 1205
FspBI	CTAG	4 cut(s)	8, 126, 308, 1172
FspI	TGCGCA	1 cut(s)	587
GlaI	GCGC	3 cut(s)	264, 587, 592
GluI	GCNGC	5 cut(s)	189, 458, 589, 1026, 1205
GsaI	CCCAGC	1 cut(s)	881
GsuI	CTGGAG	1 cut(s)	344
HaeII	RGCGCY	1 cut(s)	594
HaeIII	GGCC	2 cut(s)	876, 1021
HapII	CCGG	2 cut(s)	287, 914
HhaI	GCGC	3 cut(s)	265, 588, 593
Hin1II	CATG	4 cut(s)	301, 636, 721, 990
Hin6I	GCGC	3 cut(s)	263, 586, 591
HinP1I	GCGC	3 cut(s)	263, 586, 591
HinfI	GANTC	3 cut(s)	230, 257, 976
HpaII	CCGG	2 cut(s)	287, 914
HphI	GGTGA	3 cut(s)	758, 1006, 1195
Hpy166II	GTNNAC	2 cut(s)	614, 783
Hpy188I	TCNGA	9 cut(s)	235, 250, 276, 432, 502, 510, 705, 934, 1091
Hpy188III	TCNNGA	5 cut(s)	205, 718, 1003, 1172, 1222
Hpy8I	GTNNAC	2 cut(s)	614, 783
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	3 cut(s)	665, 880, 1180
HpyCH4III	ACNGT	1 cut(s)	824
HpyCH4IV	ACGT	3 cut(s)	170, 582, 840
HpyCH4V	TGCA	8 cut(s)	16, 553, 632, 755, 961, 986, 1028, 1121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 328
HpyF3I	CTNAG	2 cut(s)	275, 499
HpySE526I	ACGT	3 cut(s)	170, 582, 840
Hsp92II	CATG	4 cut(s)	301, 636, 721, 990
HspAI	GCGC	3 cut(s)	263, 586, 591
Kzo9I	GATC	2 cut(s)	207, 951
LmnI	GCTCC	2 cut(s)	4, 328
Lsp1109I	GCAGC	2 cut(s)	600, 1012
LweI	GCATC	1 cut(s)	619
MabI	ACCWGGT	1 cut(s)	529
MaeI	CTAG	4 cut(s)	8, 126, 308, 1172
MaeII	ACGT	3 cut(s)	170, 582, 840
MaeIII	GTNAC	2 cut(s)	445, 680
MalI	GATC	2 cut(s)	209, 953
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	2 cut(s)	207, 951
MboII	GAAGA	9 cut(s)	233, 236, 266, 556, 589, 680, 848, 1157, 1237
MfeI	CAATTG	1 cut(s)	441
MflI	RGATCY	1 cut(s)	951
MhlI	GDGCHC	3 cut(s)	407, 912, 1221
MlyI	GAGTC	2 cut(s)	224, 251
MmeI	TCCRAC	3 cut(s)	179, 273, 728
Mph1103I	ATGCAT	2 cut(s)	634, 988
MseI	TTAA	3 cut(s)	600, 654, 1191
MslI	CAYNNNNRTG	2 cut(s)	360, 806
MspA1I	CMGCKG	1 cut(s)	1025
MspI	CCGG	2 cut(s)	287, 914
MspR9I	CCNGG	3 cut(s)	531, 744, 914
MteI	GCGCNGCGC	1 cut(s)	589
MunI	CAATTG	1 cut(s)	441
MvaI	CCWGG	2 cut(s)	531, 744
MvnI	CGCG	2 cut(s)	263, 605
MwoI	GCNNNNNNNGC	2 cut(s)	13, 328
NciI	CCSGG	1 cut(s)	914
NdeII	GATC	2 cut(s)	207, 951
NheI	GCTAGC	1 cut(s)	7
NlaIII	CATG	4 cut(s)	301, 636, 721, 990
NmeAIII	GCCGAG	1 cut(s)	238
NsbI	TGCGCA	1 cut(s)	587
NsiI	ATGCAT	2 cut(s)	634, 988
NspI	RCATGY	2 cut(s)	636, 990
PagI	TCATGA	1 cut(s)	717
PfeI	GAWTC	1 cut(s)	976
PflMI	CCANNNNNTGG	1 cut(s)	424
PkrI	GCNGC	5 cut(s)	190, 459, 590, 1027, 1206
PleI	GAGTC	2 cut(s)	224, 251
PmaCI	CACGTG	1 cut(s)	171
PmlI	CACGTG	1 cut(s)	171
PpsI	GAGTC	2 cut(s)	224, 251
Ppu21I	YACGTR	1 cut(s)	171
PshBI	ATTAAT	1 cut(s)	654
Psp6I	CCWGG	2 cut(s)	529, 742
PspCI	CACGTG	1 cut(s)	171
PspEI	GGTNACC	1 cut(s)	680
PspFI	CCCAGC	1 cut(s)	877
PspGI	CCWGG	2 cut(s)	529, 742
PspPI	GGNCC	2 cut(s)	21, 875
PsuI	RGATCY	1 cut(s)	951
PvuII	CAGCTG	1 cut(s)	1025
RsaI	GTAC	2 cut(s)	239, 615
RsaNI	GTAC	2 cut(s)	238, 614
RseI	CAYNNNNRTG	2 cut(s)	360, 806
SaqAI	TTAA	3 cut(s)	600, 654, 1191
SatI	GCNGC	5 cut(s)	189, 458, 589, 1026, 1205
Sau3AI	GATC	2 cut(s)	207, 951
Sau96I	GGNCC	2 cut(s)	21, 875
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	2 cut(s)	224, 251
ScrFI	CCNGG	3 cut(s)	531, 744, 914
SduI	GDGCHC	3 cut(s)	407, 912, 1221
SexAI	ACCWGGT	1 cut(s)	529
SfaNI	GCATC	1 cut(s)	619
SinI	GGWCC	1 cut(s)	21
SmiMI	CAYNNNNRTG	2 cut(s)	360, 806
SsiI	CCGC	9 cut(s)	24, 109, 186, 189, 200, 261, 458, 605, 1204
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	4 cut(s)	8, 126, 308, 1172
StyD4I	CCNGG	3 cut(s)	529, 742, 912
TaaI	ACNGT	1 cut(s)	824
TaiI	ACGT	3 cut(s)	173, 585, 843
TatI	WGTACW	2 cut(s)	237, 613
TauI	GCSGC	3 cut(s)	191, 460, 1207
TfiI	GAWTC	1 cut(s)	976
Tru1I	TTAA	3 cut(s)	600, 654, 1191
Tru9I	TTAA	3 cut(s)	600, 654, 1191
TscAI	CASTG	2 cut(s)	813, 854
TseI	GCWGC	2 cut(s)	588, 1025
TspDTI	ATGAA	3 cut(s)	590, 672, 734
TspRI	CASTG	2 cut(s)	813, 854
Van91I	CCANNNNNTGG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	21
VspI	ATTAAT	1 cut(s)	654
XapI	RAATTY	6 cut(s)	71, 137, 150, 477, 1066, 1248
XbaI	TCTAGA	1 cut(s)	1171
XceI	RCATGY	2 cut(s)	636, 990
XspI	CTAG	4 cut(s)	8, 126, 308, 1172
ZrmI	AGTACT	1 cut(s)	239
Zsp2I	ATGCAT	2 cut(s)	634, 988

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.