Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004575

Physical Location & Seq

Genomic Coordinates Forward (+)

16580348 .. 16584070

Gene Structure 3723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G157900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGAGCTAGCTCTACACATGTCCGCTTCTTTTTGCAGAGAGAACTCTCTAACCCATTACTGCCACTCCAAATTCCTAACAACCCAAGATTACCAAAAGACTCTTTTTCCTCATTTTACCAGAAAATCCCAATTGCAGCAGCCTAAGAATCGAATAAAGAGGACTTCGAAACTTGTGGTTTCAGCCACAAAACAACGGCTTTGGATTAGCGAACAACAGCAAGGCCAAGAAGAAGAAGAAGAAGAAGCAGAAGAAGAAGAGGAAGATGAAGAAGAAGAAGAGTACGCTTATTCGGAGGACGAGTCATCATTGTTGTCTCTGAGTGAGAAGCCTGACAGGAGCATGGCTATGCTCGATGAATATGAGATAGAGGAGCTTGACTATGCCATCGACCCTAACCATAGAAGTGGGTATGTGGCTGTTCTGGGAAAGCCAAATGTGGGGAAAAGTACTCTTTCAAATCAAATGGTTGGTCAGAAGTTGTCCATAGTTACTGATAAACCTCAAACTACAAGGCATCGAATTCTTGGTATATGTTCTGGCACAGACTATCAGATGATACTTTATGACACACCGGGTGTTATCGAGAAGAAAATGCACAAGTTGGATTCTATGATGATGAAAAATGTTCGCAGTGCTGTCATAAATGCAGATTGTGTACTTGTTCTTGTTGATGCATGTAAAGTGCCTGAAAAAATCGATGAAGTGTTGGAAGAAGGTGTTGGTAACCAGGCAGATAGGTTGCCGCCCACTTTGCTGGTGATGAATAAGAAGGATTTGATTAAACCTGGTGAAATTGCAAAGAAACTAGAGTGGTATGAGAAATTTACAAACGTTGATGAGGTCATACCTGTGAGTGCTAAACATGGGCAGGGAGTGGAAGATGTCAAGCACTGGATTTTATCAAAACTTCCTTTTGGGCCAGCATATTATCCAAAGGACATTGTCAGTGAGCACCCAGAAAGATTCTTTGTATCTGAAATTGTTCGAGAAAAGATCTTTATGCAATACCGTAAAGAGATTCCTTATGTGTGTCAGGTGAATGTCGTGAGCTACAAAACTAGGCCAACGGCGAAAGATTTTATACAAGTGGAAATTGTCGTTGAAAAGAACTCGCAGAAGATCATTGTTATTGGCAAAGAGGGGAGAGCTCTGAAGCTACTTGCAACAGCTGCACGGCTTGACATAGAAAATTTTTTACAGAAAAAAGTTTTTCTGGAGGTTGAAGTGAAGGTTAAAGAGAACTGGCGGCAAGATGAAGTGCTTTTGAAGAATTATGGCTATGGAGGTCAAATTCAAGCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

436

Amino Acids

50.08

Weight (kDa)

5.52

Isoelectric Point (pI)

44.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66470 AT5G66470
fragaria_vesca	FvH4_1g12880 FvH4_2g39510
malus_domestica	MD02G1143800.v1.1 MD15G1257100.v1.1
prunus_persica	Prupe.7G157900_v2.0.a1 Prupe.7G157900_v2.0.a1
pyrus_communis	pycom02g11370 pycom15g22500
rosa_chinensis	RchiOBHm_Chr2g0100961 RchiOBHm_Chr6g0301441
rosa_laevigata	RLG00000011253 RLG00000012203 RLG00000017029
rosa_multiflora	Rmu_sc0014417.1_g000011
rosa_roxburghii	Rroxscaffold_2G00141710 Rroxscaffold_7G00166820
rosa_rugosa	Rorug02G0094100 Rorug02G0094200 Rorug06G0304700
rosa_samantha	Rh2AG141700 Rh2BG146900 Rh2CG148200 Rh2DG147400 Rh6AG418400 Rh6BG424600 Rh6CG431900 Rh6DG417800
rosa_wichuraiana	Rw2G011120 Rw6G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	24, 746, 1249
AclI	AACGTT	1 cut(s)	834
AcsI	RAATTY	5 cut(s)	71, 522, 824, 1192, 1293
AcuI	CTGAAG	1 cut(s)	1175
AdeI	CACNNNGTG	1 cut(s)	578
AfaI	GTAC	3 cut(s)	284, 451, 660
AfiI	CCNNNNNNNGG	1 cut(s)	440
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	5 cut(s)	459, 1106, 1226, 1270, 1298
AjnI	CCWGG	2 cut(s)	729, 787
AjuI	GAANNNNNNNTTGG	2 cut(s)	705, 737
AluBI	AGCT	7 cut(s)	7, 11, 376, 1053, 1151, 1159, 1172
AluI	AGCT	7 cut(s)	7, 11, 376, 1053, 1151, 1159, 1172
Alw21I	GWGCWC	2 cut(s)	957, 1153
Alw26I	GTCTC	1 cut(s)	321
AoxI	GGCC	3 cut(s)	223, 920, 1064
ApeKI	GCWGC	3 cut(s)	136, 139, 1172
ApoI	RAATTY	5 cut(s)	71, 522, 824, 1192, 1293
ArsI	GACNNNNNNTTYG	2 cut(s)	457, 489
Asp700I	GAANNNNTTC	1 cut(s)	984
AspS9I	GGNCC	1 cut(s)	920
AsuC2I	CCSGG	1 cut(s)	576
AsuHPI	GGTGA	3 cut(s)	772, 803, 1051
AsuII	TTCGAA	1 cut(s)	167
AsuNHI	GCTAGC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	1153
Bbv12I	GWGCWC	2 cut(s)	957, 1153
BbvI	GCAGC	3 cut(s)	148, 151, 1159
BccI	CCATC	1 cut(s)	395
BceAI	ACGGC	3 cut(s)	212, 1086, 1193
BciT130I	CCWGG	2 cut(s)	731, 789
BcnI	CCSGG	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	3 cut(s)	8, 809, 1062
BglII	AGATCT	1 cut(s)	996
BisI	GCNGC	5 cut(s)	137, 140, 746, 1173, 1250
BlsI	GCNGC	5 cut(s)	138, 141, 747, 1174, 1251
BmcAI	AGTACT	1 cut(s)	451
Bme1390I	CCNGG	3 cut(s)	576, 731, 789
BmgT120I	GGNCC	1 cut(s)	920
BmrFI	CCNGG	3 cut(s)	576, 731, 789
BmsI	GCATC	2 cut(s)	526, 664
BmtI	GCTAGC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	1238
Bpu14I	TTCGAA	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	576
Bsa29I	ATCGAT	1 cut(s)	699
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 287, 317
Bsc4I	CCNNNNNNNGG	1 cut(s)	440
Bse1I	ACTGG	2 cut(s)	899, 1250
BseBI	CCWGG	2 cut(s)	731, 789
BseCI	ATCGAT	1 cut(s)	699
BseLI	CCNNNNNNNGG	1 cut(s)	440
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	2 cut(s)	899, 1250
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	3 cut(s)	148, 151, 1159
BsgI	GTGCAG	1 cut(s)	1158
BshFI	GGCC	3 cut(s)	225, 922, 1066
BshVI	ATCGAT	1 cut(s)	699
BsiHKAI	GWGCWC	2 cut(s)	957, 1153
BsiSI	CCGG	1 cut(s)	575
BslI	CCNNNNNNNGG	1 cut(s)	440
BsmAI	GTCTC	1 cut(s)	321
BsnI	GGCC	3 cut(s)	225, 922, 1066
Bsp119I	TTCGAA	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	957, 1153
Bsp143I	GATC	2 cut(s)	996, 1122
BspACI	CCGC	3 cut(s)	24, 746, 1249
BspANI	GGCC	3 cut(s)	225, 922, 1066
BspCNI	CTCAG	1 cut(s)	312
BspDI	ATCGAT	1 cut(s)	699
BspOI	GCTAGC	1 cut(s)	11
BspT104I	TTCGAA	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	899, 1250
BssMI	GATC	2 cut(s)	996, 1122
Bst2UI	CCWGG	2 cut(s)	731, 789
Bst4CI	ACNGT	1 cut(s)	1013
Bst6I	CTCTTC	2 cut(s)	252, 273
BstAPI	GCANNNNNTGC	1 cut(s)	1172
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	9, 924
BstDEI	CTNAG	2 cut(s)	144, 320
BstEII	GGTNACC	1 cut(s)	725
BstKTI	GATC	2 cut(s)	999, 1125
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	2 cut(s)	996, 1122
BstMWI	GCNNNNNNNGC	2 cut(s)	754, 1172
BstNI	CCWGG	2 cut(s)	731, 789
BstNSI	RCATGY	2 cut(s)	22, 681
BstPI	GGTNACC	1 cut(s)	725
BstSCI	CCNGG	3 cut(s)	574, 729, 787
BstV1I	GCAGC	3 cut(s)	148, 151, 1159
BstX2I	RGATCY	1 cut(s)	996
BstXI	CCANNNNNNTGG	2 cut(s)	407, 757
BstYI	RGATCY	1 cut(s)	996
Bsu15I	ATCGAT	1 cut(s)	699
BsuRI	GGCC	3 cut(s)	225, 922, 1066
BsuTUI	ATCGAT	1 cut(s)	699
BtsI	GCAGTG	1 cut(s)	640
BtsIMutI	CAGTG	3 cut(s)	640, 892, 955
Cac8I	GCNNGC	2 cut(s)	9, 924
Cfr13I	GGNCC	1 cut(s)	920
ClaI	ATCGAT	1 cut(s)	699
CsiI	ACCWGGT	1 cut(s)	787
Csp6I	GTAC	3 cut(s)	283, 450, 659
CviAII	CATG	4 cut(s)	19, 343, 678, 866
CviQI	GTAC	3 cut(s)	283, 450, 659
DdeI	CTNAG	2 cut(s)	144, 320
DpnI	GATC	2 cut(s)	998, 1124
DpnII	GATC	2 cut(s)	996, 1122
DraIII	CACNNNGTG	1 cut(s)	578
Eam1104I	CTCTTC	2 cut(s)	252, 273
EarI	CTCTTC	2 cut(s)	252, 273
Ecl136II	GAGCTC	1 cut(s)	1151
Eco24I	GRGCYC	1 cut(s)	1153
Eco53kI	GAGCTC	1 cut(s)	1151
Eco57I	CTGAAG	1 cut(s)	1175
Eco91I	GGTNACC	1 cut(s)	725
EcoICRI	GAGCTC	1 cut(s)	1151
EcoO65I	GGTNACC	1 cut(s)	725
EcoRI	GAATTC	1 cut(s)	522
EcoRII	CCWGG	2 cut(s)	729, 787
EcoT22I	ATGCAT	1 cut(s)	679
EcoT38I	GRGCYC	1 cut(s)	1153
FaeI	CATG	4 cut(s)	22, 346, 681, 869
FatI	CATG	4 cut(s)	18, 342, 677, 865
Fnu4HI	GCNGC	5 cut(s)	137, 140, 746, 1173, 1250
FriOI	GRGCYC	1 cut(s)	1153
Fsp4HI	GCNGC	5 cut(s)	137, 140, 746, 1173, 1250
FspBI	CTAG	3 cut(s)	8, 809, 1062
GluI	GCNGC	5 cut(s)	137, 140, 746, 1173, 1250
GsuI	CTGGAG	1 cut(s)	1238
HaeIII	GGCC	3 cut(s)	225, 922, 1066
HapII	CCGG	1 cut(s)	575
Hin1II	CATG	4 cut(s)	22, 346, 681, 869
HinfI	GANTC	6 cut(s)	100, 148, 302, 608, 966, 1021
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	3 cut(s)	772, 803, 1051
Hpy166II	GTNNAC	1 cut(s)	659
Hpy188I	TCNGA	6 cut(s)	295, 321, 477, 555, 979, 1155
Hpy188III	TCNNGA	4 cut(s)	586, 989, 1048, 1217
Hpy8I	GTNNAC	1 cut(s)	659
HpyAV	CCTTC	3 cut(s)	710, 766, 1225
HpyCH4III	ACNGT	1 cut(s)	1013
HpyCH4IV	ACGT	1 cut(s)	834
HpyCH4V	TGCA	9 cut(s)	36, 136, 598, 650, 677, 800, 1006, 1166, 1175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	754, 1172
HpyF3I	CTNAG	2 cut(s)	144, 320
HpySE526I	ACGT	1 cut(s)	834
Hsp92II	CATG	4 cut(s)	22, 346, 681, 869
Kzo9I	GATC	2 cut(s)	996, 1122
LmnI	GCTCC	3 cut(s)	4, 339, 373
Lsp1109I	GCAGC	3 cut(s)	148, 151, 1159
LweI	GCATC	2 cut(s)	526, 664
MabI	ACCWGGT	1 cut(s)	787
MaeI	CTAG	3 cut(s)	8, 809, 1062
MaeII	ACGT	1 cut(s)	834
MaeIII	GTNAC	2 cut(s)	490, 725
MalI	GATC	2 cut(s)	998, 1124
MboI	GATC	2 cut(s)	996, 1122
MfeI	CAATTG	1 cut(s)	131
MflI	RGATCY	1 cut(s)	996
MhlI	GDGCHC	2 cut(s)	957, 1153
MlyI	GAGTC	2 cut(s)	94, 311
MmeI	TCCRAC	2 cut(s)	585, 690
Mph1103I	ATGCAT	1 cut(s)	679
MroXI	GAANNNNTTC	1 cut(s)	984
MseI	TTAA	2 cut(s)	783, 1236
MslI	CAYNNNNRTG	3 cut(s)	347, 405, 851
MspA1I	CMGCKG	1 cut(s)	1172
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	3 cut(s)	576, 731, 789
MunI	CAATTG	1 cut(s)	131
MvaI	CCWGG	2 cut(s)	731, 789
MwoI	GCNNNNNNNGC	2 cut(s)	754, 1172
NciI	CCSGG	1 cut(s)	576
NdeII	GATC	2 cut(s)	996, 1122
NheI	GCTAGC	1 cut(s)	7
NlaIII	CATG	4 cut(s)	22, 346, 681, 869
NsiI	ATGCAT	1 cut(s)	679
NspI	RCATGY	2 cut(s)	22, 681
NspV	TTCGAA	1 cut(s)	167
PciI	ACATGT	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	984
PfeI	GAWTC	4 cut(s)	148, 608, 966, 1021
PflFI	GACNNNGTC	1 cut(s)	944
PkrI	GCNGC	5 cut(s)	138, 141, 747, 1174, 1251
PleI	GAGTC	2 cut(s)	94, 310
PpsI	GAGTC	2 cut(s)	94, 310
PscI	ACATGT	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	1153
Psp1406I	AACGTT	1 cut(s)	834
Psp6I	CCWGG	2 cut(s)	729, 787
PspEI	GGTNACC	1 cut(s)	725
PspGI	CCWGG	2 cut(s)	729, 787
PspPI	GGNCC	1 cut(s)	920
PsuI	RGATCY	1 cut(s)	996
PsyI	GACNNNGTC	1 cut(s)	944
PvuII	CAGCTG	1 cut(s)	1172
RsaI	GTAC	3 cut(s)	284, 451, 660
RsaNI	GTAC	3 cut(s)	283, 450, 659
RseI	CAYNNNNRTG	3 cut(s)	347, 405, 851
SacI	GAGCTC	1 cut(s)	1153
SaqAI	TTAA	2 cut(s)	783, 1236
SatI	GCNGC	5 cut(s)	137, 140, 746, 1173, 1250
Sau3AI	GATC	2 cut(s)	996, 1122
Sau96I	GGNCC	1 cut(s)	920
ScaI	AGTACT	1 cut(s)	451
SchI	GAGTC	2 cut(s)	94, 311
ScrFI	CCNGG	3 cut(s)	576, 731, 789
SduI	GDGCHC	2 cut(s)	957, 1153
SexAI	ACCWGGT	1 cut(s)	787
SfaNI	GCATC	2 cut(s)	526, 664
SfuI	TTCGAA	1 cut(s)	167
SmiMI	CAYNNNNRTG	3 cut(s)	347, 405, 851
SsiI	CCGC	3 cut(s)	24, 746, 1249
SspMI	CTAG	3 cut(s)	8, 809, 1062
SstI	GAGCTC	1 cut(s)	1153
StyD4I	CCNGG	3 cut(s)	574, 729, 787
TaaI	ACNGT	1 cut(s)	1013
TaiI	ACGT	1 cut(s)	837
TaqI	TCGA	8 cut(s)	151, 167, 354, 390, 520, 585, 699, 988
TatI	WGTACW	2 cut(s)	449, 658
TauI	GCSGC	2 cut(s)	748, 1252
TfiI	GAWTC	4 cut(s)	148, 608, 966, 1021
Tru1I	TTAA	2 cut(s)	783, 1236
Tru9I	TTAA	2 cut(s)	783, 1236
TscAI	CASTG	3 cut(s)	640, 899, 955
TseI	GCWGC	3 cut(s)	136, 139, 1172
TspDTI	ATGAA	6 cut(s)	282, 372, 635, 717, 779, 1272
TspRI	CASTG	3 cut(s)	640, 899, 955
Tth111I	GACNNNGTC	1 cut(s)	944
XapI	RAATTY	5 cut(s)	71, 522, 824, 1192, 1293
XceI	RCATGY	2 cut(s)	22, 681
XmnI	GAANNNNTTC	1 cut(s)	984
XspI	CTAG	3 cut(s)	8, 809, 1062
ZrmI	AGTACT	1 cut(s)	451
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.