Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004575

Physical Location & Seq

Genomic Coordinates Reverse (-)

12655785 .. 12658825

Gene Structure 3041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG146900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGAGCTAGCTCTACACACGTCTGCAACCCTCCCCAGAGATAATTCCCTCACCCATTACACCAATCCCAAATTCCTCACTACCCAACACCACCACAACACTCGTTTTCCTCGTTCCACTAGAAAACCCAACTTCCAGGCCAGAATTCCAACAACAATAACCACCTGGAAACTTTCGTCCGCCACAAAACCACCGCTCAGGGTCAGCGAACAAGAAGAAGATGAAGACTCGGAGTACTCTTATTCCGACGAAGACTCGTCGCTGTTGTCCCTGAGTGAGAAGCCTGACAGAAACATGGCTATGCTTGATGACTACGAGATAGAGGAGCTTGACTATGCTACTGACCCTAACCATAGGAGTGGGTATGTGGCTGTTCTGGGGAAGCCCAATGTGGGAAAGAGTACTCTTTCAAACCAAATGGTTGGTCAGAAATTGTCAATTGTTACTGATAAGCCTCAAACTACAAGGCATAGAATTCTTGGTATATGCTCTGGCTCAGACTATCAGATGATACTTTATGACACACCGGGTGTTATTGAGAAGAAAATGCACAAGTTGGATACTATGATGATGAAGAATGTTCGCAGCGCCGTTATTAATGCGGATTGTGTACTTGTTCTTGTTGATGCATGTAAAGTGCCTGAAAATATTAATGAAGTGGTGGAAGAAGGTGTGGGTAACCAGACAGATAGCCTGCCGCCTACTTTGCTGGTCATGAATAAGAAAGATTTGATTAAGCCAGGTGAAATTGCAAAGAAACTAGAGTGGTATGAGAAGTTTACAAATGTTGATGAGGTCATACCAGTGAGTGCCAAACACGGTCAGGGAGTGGAAGACGTGAAGCAGTGGATATTGTCAAAACTTCCCTTCGGCCCAGCTTATTATCCAAAGGACATCGTAAGTGAGCACCCAGAAAGATTTTTTGTATCAGAGATTGTGAGAGAAAAGATCTTTATGCAATACAGGAAAGAGATTCCTTATGCATGTCAGGTGAATGTTGTGAGCTACAAAACTAGGCCAGCAGCAAAAGATTTTATACAAGTGGAAATCGTTGTTGAGAAAAATTCACAGAAAATCATCCTTATTGGAAAAGATGGGAGAGCTTTGAAACTACTTGCAACTGCATCGCGGCTTGACATAGAAGATTTCTTACAGAAGAAAGTTTTTCTAGAGGTCGAGGTGAAGGTTAAAGAGAACTGGCGGCAAGATGAAGGGCTCTTGAAGAATTATGGCTATGGGGGTCAAATTCAAACATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

419

Amino Acids

47.72

Weight (kDa)

6.25

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	123 - 241	1.4e-23	50S ribosome-binding GTPase
FeoB_N	PF02421	123 - 282	1.1e-11	Ferrous iron transport protein B
KH_2	PF07650	324 - 401	7.6e-15	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66470 AT5G66470
fragaria_vesca	FvH4_1g12880 FvH4_2g39510
malus_domestica	MD02G1143800.v1.1 MD15G1257100.v1.1
prunus_persica	Prupe.7G157900_v2.0.a1 Prupe.7G157900_v2.0.a1
pyrus_communis	pycom02g11370 pycom15g22500
rosa_chinensis	RchiOBHm_Chr2g0100961 RchiOBHm_Chr6g0301441
rosa_laevigata	RLG00000011253 RLG00000012203 RLG00000017029
rosa_multiflora	Rmu_sc0014417.1_g000011
rosa_roxburghii	Rroxscaffold_2G00141710 Rroxscaffold_7G00166820
rosa_rugosa	Rorug02G0094100 Rorug02G0094200 Rorug06G0304700
rosa_samantha	Rh2AG141700 Rh2BG146900 Rh2CG148200 Rh2DG147400 Rh6AG418400 Rh6BG424600 Rh6CG431900 Rh6DG417800
rosa_wichuraiana	Rw2G011120 Rw6G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	196
AccII	CGCG	1 cut(s)	1129
AciI	CCGC	6 cut(s)	180, 194, 602, 698, 1129, 1201
AcsI	RAATTY	5 cut(s)	71, 144, 474, 1063, 1245
AdeI	CACNNNGTG	1 cut(s)	530
AfaI	GTAC	3 cut(s)	236, 403, 612
AfiI	CCNNNNNNNGG	1 cut(s)	392
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	4 cut(s)	411, 1108, 1222, 1250
AjiI	CACGTC	2 cut(s)	21, 838
AjnI	CCWGG	3 cut(s)	135, 164, 739
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	6 cut(s)	7, 11, 328, 878, 1005, 1103
AluI	AGCT	6 cut(s)	7, 11, 328, 878, 1005, 1103
Alw21I	GWGCWC	1 cut(s)	909
AoxI	GGCC	3 cut(s)	138, 871, 1016
ApeKI	GCWGC	2 cut(s)	585, 1022
ApoI	RAATTY	5 cut(s)	71, 144, 474, 1063, 1245
ArsI	GACNNNNNNTTYG	2 cut(s)	409, 441
AseI	ATTAAT	2 cut(s)	597, 651
AspLEI	GCGC	1 cut(s)	590
AspS9I	GGNCC	1 cut(s)	872
AsuC2I	CCSGG	1 cut(s)	528
AsuHPI	GGTGA	4 cut(s)	43, 755, 1003, 1192
AsuNHI	GCTAGC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	1218
BarI	GAAGNNNNNNTAC	2 cut(s)	1134, 1166
BbsI	GAAGAC	3 cut(s)	231, 258, 840
Bbv12I	GWGCWC	1 cut(s)	909
BbvI	GCAGC	2 cut(s)	597, 1034
BccI	CCATC	1 cut(s)	1088
BceAI	ACGGC	1 cut(s)	575
BcgI	CGANNNNNNTGC	2 cut(s)	1107, 1141
BciT130I	CCWGG	3 cut(s)	137, 166, 741
BciVI	GTATCC	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	528
BfaI	CTAG	5 cut(s)	8, 120, 761, 1014, 1169
BfoI	RGCGCY	1 cut(s)	591
BfuI	GTATCC	1 cut(s)	553
BglII	AGATCT	1 cut(s)	948
BisI	GCNGC	5 cut(s)	586, 698, 1023, 1130, 1202
BlsI	GCNGC	5 cut(s)	587, 699, 1024, 1131, 1203
BmcAI	AGTACT	2 cut(s)	236, 403
Bme1390I	CCNGG	4 cut(s)	137, 166, 528, 741
BmgBI	CACGTC	2 cut(s)	21, 838
BmgT120I	GGNCC	1 cut(s)	872
BmrFI	CCNGG	4 cut(s)	137, 166, 528, 741
BmsI	GCATC	2 cut(s)	616, 1133
BmtI	GCTAGC	1 cut(s)	11
BpiI	GAAGAC	3 cut(s)	231, 258, 840
Bpu10I	CCTNAGC	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	528
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse1I	ACTGG	2 cut(s)	803, 1202
BseBI	CCWGG	3 cut(s)	137, 166, 741
BseGI	GGATG	1 cut(s)	1077
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMII	CTCAG	3 cut(s)	211, 263, 510
BseNI	ACTGG	2 cut(s)	803, 1202
BseRI	GAGGAG	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	597, 1034
BseYI	CCCAGC	1 cut(s)	874
Bsh1236I	CGCG	1 cut(s)	1129
BshFI	GGCC	3 cut(s)	140, 873, 1018
BsiHKAI	GWGCWC	1 cut(s)	909
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmFI	GGGAC	1 cut(s)	253
BsnI	GGCC	3 cut(s)	140, 873, 1018
Bsp1286I	GDGCHC	2 cut(s)	909, 1218
Bsp143I	GATC	1 cut(s)	948
BspACI	CCGC	6 cut(s)	180, 194, 602, 698, 1129, 1201
BspANI	GGCC	3 cut(s)	140, 873, 1018
BspCNI	CTCAG	3 cut(s)	210, 264, 509
BspFNI	CGCG	1 cut(s)	1129
BspHI	TCATGA	1 cut(s)	714
BspOI	GCTAGC	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	196
BsrI	ACTGG	2 cut(s)	803, 1202
BssMI	GATC	1 cut(s)	948
Bst2UI	CCWGG	3 cut(s)	137, 166, 741
Bst4CI	ACNGT	1 cut(s)	821
BstC8I	GCNNGC	3 cut(s)	9, 695, 1020
BstDEI	CTNAG	3 cut(s)	197, 272, 496
BstEII	GGTNACC	1 cut(s)	677
BstF5I	GGATG	1 cut(s)	1077
BstFNI	CGCG	1 cut(s)	1129
BstH2I	RGCGCY	1 cut(s)	591
BstHHI	GCGC	1 cut(s)	590
BstKTI	GATC	1 cut(s)	951
BstMBI	GATC	1 cut(s)	948
BstMWI	GCNNNNNNNGC	1 cut(s)	706
BstNI	CCWGG	3 cut(s)	137, 166, 741
BstNSI	RCATGY	2 cut(s)	633, 987
BstPI	GGTNACC	1 cut(s)	677
BstSCI	CCNGG	4 cut(s)	135, 164, 526, 739
BstUI	CGCG	1 cut(s)	1129
BstV1I	GCAGC	2 cut(s)	597, 1034
BstV2I	GAAGAC	3 cut(s)	231, 258, 840
BstX2I	RGATCY	1 cut(s)	948
BstXI	CCANNNNNNTGG	2 cut(s)	359, 422
BstYI	RGATCY	1 cut(s)	948
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	3 cut(s)	140, 873, 1018
BtgZI	GCGATG	1 cut(s)	1110
BtrI	CACGTC	2 cut(s)	21, 838
BtsCI	GGATG	1 cut(s)	1077
BtsI	GCAGTG	1 cut(s)	851
BtsIMutI	CAGTG	2 cut(s)	810, 851
Cac8I	GCNNGC	3 cut(s)	9, 695, 1020
CciI	TCATGA	1 cut(s)	714
CfoI	GCGC	1 cut(s)	590
Cfr13I	GGNCC	1 cut(s)	872
Csp6I	GTAC	3 cut(s)	235, 402, 611
CviAII	CATG	4 cut(s)	295, 630, 715, 984
CviQI	GTAC	3 cut(s)	235, 402, 611
DdeI	CTNAG	3 cut(s)	197, 272, 496
DpnI	GATC	1 cut(s)	950
DpnII	GATC	1 cut(s)	948
DraIII	CACNNNGTG	1 cut(s)	530
EciI	GGCGGA	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	1218
Eco91I	GGTNACC	1 cut(s)	677
EcoO65I	GGTNACC	1 cut(s)	677
EcoRI	GAATTC	2 cut(s)	144, 474
EcoRII	CCWGG	3 cut(s)	135, 164, 739
EcoT22I	ATGCAT	2 cut(s)	631, 985
EcoT38I	GRGCYC	1 cut(s)	1218
FaeI	CATG	4 cut(s)	298, 633, 718, 987
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	4 cut(s)	294, 629, 714, 983
Fnu4HI	GCNGC	5 cut(s)	586, 698, 1023, 1130, 1202
FokI	GGATG	1 cut(s)	1064
FriOI	GRGCYC	1 cut(s)	1218
Fsp4HI	GCNGC	5 cut(s)	586, 698, 1023, 1130, 1202
FspBI	CTAG	5 cut(s)	8, 120, 761, 1014, 1169
GlaI	GCGC	1 cut(s)	589
GluI	GCNGC	5 cut(s)	586, 698, 1023, 1130, 1202
GsaI	CCCAGC	1 cut(s)	878
HaeII	RGCGCY	1 cut(s)	591
HaeIII	GGCC	3 cut(s)	140, 873, 1018
HapII	CCGG	1 cut(s)	527
HhaI	GCGC	1 cut(s)	590
Hin1II	CATG	4 cut(s)	298, 633, 718, 987
Hin6I	GCGC	1 cut(s)	588
HinP1I	GCGC	1 cut(s)	588
HinfI	GANTC	3 cut(s)	227, 254, 973
HpaII	CCGG	1 cut(s)	527
HphI	GGTGA	4 cut(s)	43, 755, 1003, 1192
Hpy166II	GTNNAC	2 cut(s)	611, 780
Hpy188I	TCNGA	6 cut(s)	232, 247, 429, 499, 507, 931
Hpy188III	TCNNGA	3 cut(s)	715, 1169, 1219
Hpy8I	GTNNAC	2 cut(s)	611, 780
Hpy99I	CGWCG	2 cut(s)	251, 262
HpyAV	CCTTC	4 cut(s)	662, 877, 1177, 1205
HpyCH4III	ACNGT	1 cut(s)	821
HpyCH4IV	ACGT	2 cut(s)	20, 837
HpyCH4V	TGCA	8 cut(s)	26, 550, 629, 752, 958, 983, 1118, 1124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	706
HpyF3I	CTNAG	3 cut(s)	197, 272, 496
HpySE526I	ACGT	2 cut(s)	20, 837
Hsp92II	CATG	4 cut(s)	298, 633, 718, 987
HspAI	GCGC	1 cut(s)	588
Kzo9I	GATC	1 cut(s)	948
LmnI	GCTCC	2 cut(s)	4, 325
Lsp1109I	GCAGC	2 cut(s)	597, 1034
LweI	GCATC	2 cut(s)	616, 1133
MaeI	CTAG	5 cut(s)	8, 120, 761, 1014, 1169
MaeII	ACGT	2 cut(s)	20, 837
MaeIII	GTNAC	2 cut(s)	442, 677
MalI	GATC	1 cut(s)	950
MbiI	CCGCTC	1 cut(s)	196
MboI	GATC	1 cut(s)	948
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	1 cut(s)	948
MhlI	GDGCHC	2 cut(s)	909, 1218
MlyI	GAGTC	2 cut(s)	221, 248
MmeI	TCCRAC	3 cut(s)	173, 270, 537
MnlI	CCTC	9 cut(s)	41, 59, 86, 120, 316, 465, 787, 1165, 1171
Mph1103I	ATGCAT	2 cut(s)	631, 985
MseI	TTAA	4 cut(s)	597, 651, 735, 1188
MslI	CAYNNNNRTG	3 cut(s)	299, 357, 803
MspI	CCGG	1 cut(s)	527
MspR9I	CCNGG	4 cut(s)	137, 166, 528, 741
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	3 cut(s)	137, 166, 741
MvnI	CGCG	1 cut(s)	1129
MwoI	GCNNNNNNNGC	1 cut(s)	706
NciI	CCSGG	1 cut(s)	528
NdeII	GATC	1 cut(s)	948
NheI	GCTAGC	1 cut(s)	7
NlaIII	CATG	4 cut(s)	298, 633, 718, 987
NsiI	ATGCAT	2 cut(s)	631, 985
NspI	RCATGY	2 cut(s)	633, 987
PagI	TCATGA	1 cut(s)	714
PcsI	WCGNNNNNNNCGW	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	973
PkrI	GCNGC	5 cut(s)	587, 699, 1024, 1131, 1203
PleI	GAGTC	2 cut(s)	221, 248
PpsI	GAGTC	2 cut(s)	221, 248
PshBI	ATTAAT	2 cut(s)	597, 651
Psp6I	CCWGG	3 cut(s)	135, 164, 739
PspEI	GGTNACC	1 cut(s)	677
PspFI	CCCAGC	1 cut(s)	874
PspGI	CCWGG	3 cut(s)	135, 164, 739
PspPI	GGNCC	1 cut(s)	872
PsuI	RGATCY	1 cut(s)	948
RsaI	GTAC	3 cut(s)	236, 403, 612
RsaNI	GTAC	3 cut(s)	235, 402, 611
RseI	CAYNNNNRTG	3 cut(s)	299, 357, 803
SaqAI	TTAA	4 cut(s)	597, 651, 735, 1188
SatI	GCNGC	5 cut(s)	586, 698, 1023, 1130, 1202
Sau3AI	GATC	1 cut(s)	948
Sau96I	GGNCC	1 cut(s)	872
ScaI	AGTACT	2 cut(s)	236, 403
SchI	GAGTC	2 cut(s)	221, 248
ScrFI	CCNGG	4 cut(s)	137, 166, 528, 741
SduI	GDGCHC	2 cut(s)	909, 1218
SfaNI	GCATC	2 cut(s)	616, 1133
SmiMI	CAYNNNNRTG	3 cut(s)	299, 357, 803
SsiI	CCGC	6 cut(s)	180, 194, 602, 698, 1129, 1201
SspI	AATATT	1 cut(s)	649
SspMI	CTAG	5 cut(s)	8, 120, 761, 1014, 1169
StyD4I	CCNGG	4 cut(s)	135, 164, 526, 739
TaaI	ACNGT	1 cut(s)	821
TaiI	ACGT	2 cut(s)	23, 840
TaqI	TCGA	1 cut(s)	1176
TatI	WGTACW	3 cut(s)	234, 401, 610
TauI	GCSGC	3 cut(s)	700, 1132, 1204
TfiI	GAWTC	1 cut(s)	973
Tru1I	TTAA	4 cut(s)	597, 651, 735, 1188
Tru9I	TTAA	4 cut(s)	597, 651, 735, 1188
TscAI	CASTG	2 cut(s)	810, 851
TseI	GCWGC	2 cut(s)	585, 1022
TspDTI	ATGAA	5 cut(s)	237, 587, 669, 731, 1224
TspRI	CASTG	2 cut(s)	810, 851
VspI	ATTAAT	2 cut(s)	597, 651
XapI	RAATTY	5 cut(s)	71, 144, 474, 1063, 1245
XbaI	TCTAGA	1 cut(s)	1168
XceI	RCATGY	2 cut(s)	633, 987
XspI	CTAG	5 cut(s)	8, 120, 761, 1014, 1169
ZrmI	AGTACT	2 cut(s)	236, 403
Zsp2I	ATGCAT	2 cut(s)	631, 985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.