Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004575

Physical Location & Seq

Genomic Coordinates Reverse (-)

12370877 .. 12374385

Gene Structure 3509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG147400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAACTCGATAATTGGTTAATAAGAGCTGCTTCTTCTGTCCCTGAAAAAACAAAAAGTTTAGGAGGGTTGCTGCTAGTCAAAATTTTCTGTTGGAAACAAGTGATAGTTTCTGGATGTTTTACTTACGAATGGATTTGTTTGCAGATGATACTTTATGACACACCGGGTGTTATTGAGAAGAAAATGCACAAGTTGGATACTATGATGATGAAGAATGTTCGCAGCGCCGTTATTAATGCGGATTGTGTACTTGTTCTTGTTGATGCATGTAAAGTGCCTGAAAATATTAATGAAGTGGTGGAAGAAGGTGTGGGTAACCAGACAGATAGCCTGCCGCCTACTTTGCTGGTCATGAATAAGAAAGATTTGATTAAGCCAGGTGAAATTGCAAAGAAACTAGAGTGGTATGAGAAGTTTACAAATGTTGATGAGGTCATACCAGTGAGTGCCAAACACGGTCAGGGAGTGGAAGACGTGAAGCAGTGGATATTGTCAAAACTTCCCTTCGGCCCAGCTTATTATCCAAAGGACATCGTAAGTGAGCACCCAGAAAGATTTTTTGTATCAGAGATTGTGAGAGAAAAGATCTTTATGCAATACAGGAAAGAGATTCCTTATGCATGTCAGGTGAATGTTGTGAGCTACAAAACTAGGCCAGCAGCAAAAGATTTTATACAAGTGGAAATCGTTGTTGAGAAAAATTCACAGAAAATCATCCTTATTGGAAAAGATGGGAGAGCTTTGAAACTACTTGCAACTGCATCGCGGCTTGACATAGAAGATTTCTTACAGAAGAAAGTTTTTCTAGAGGTCGAGGTGAAGGTTAAAGAGAACTGGCGGCAAGATGAAGGGCTCTTGAAGAATTATGGCTATGGGGGTCAAATTCAAACATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

299

Amino Acids

34.17

Weight (kDa)

7.53

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_2	PF07650	204 - 281	4.3e-15	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66470 AT5G66470
fragaria_vesca	FvH4_1g12880 FvH4_2g39510
malus_domestica	MD02G1143800.v1.1 MD15G1257100.v1.1
prunus_persica	Prupe.7G157900_v2.0.a1 Prupe.7G157900_v2.0.a1
pyrus_communis	pycom02g11370 pycom15g22500
rosa_chinensis	RchiOBHm_Chr2g0100961 RchiOBHm_Chr6g0301441
rosa_laevigata	RLG00000011253 RLG00000012203 RLG00000017029
rosa_multiflora	Rmu_sc0014417.1_g000011
rosa_roxburghii	Rroxscaffold_2G00141710 Rroxscaffold_7G00166820
rosa_rugosa	Rorug02G0094100 Rorug02G0094200 Rorug06G0304700
rosa_samantha	Rh2AG141700 Rh2BG146900 Rh2CG148200 Rh2DG147400 Rh6AG418400 Rh6BG424600 Rh6CG431900 Rh6DG417800
rosa_wichuraiana	Rw2G011120 Rw6G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	769
AciI	CCGC	4 cut(s)	242, 338, 769, 841
AcsI	RAATTY	3 cut(s)	84, 703, 885
AdeI	CACNNNGTG	1 cut(s)	170
AfaI	GTAC	1 cut(s)	252
AgsI	TTSAA	3 cut(s)	748, 862, 890
AjiI	CACGTC	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	4 cut(s)	29, 518, 645, 743
AluI	AGCT	4 cut(s)	29, 518, 645, 743
Alw21I	GWGCWC	1 cut(s)	549
AoxI	GGCC	2 cut(s)	511, 656
ApeKI	GCWGC	4 cut(s)	29, 73, 225, 662
ApoI	RAATTY	3 cut(s)	84, 703, 885
AseI	ATTAAT	2 cut(s)	237, 291
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	512
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	3 cut(s)	395, 643, 832
BanII	GRGCYC	1 cut(s)	858
BarI	GAAGNNNNNNTAC	2 cut(s)	774, 806
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	549
BbvI	GCAGC	4 cut(s)	16, 60, 237, 674
BccI	CCATC	1 cut(s)	728
BceAI	ACGGC	1 cut(s)	215
BcgI	CGANNNNNNTGC	2 cut(s)	747, 781
BciT130I	CCWGG	1 cut(s)	381
BciVI	GTATCC	1 cut(s)	193
BcnI	CCSGG	1 cut(s)	168
BfaI	CTAG	4 cut(s)	77, 401, 654, 809
BfoI	RGCGCY	1 cut(s)	231
BfuI	GTATCC	1 cut(s)	193
BglII	AGATCT	1 cut(s)	588
BisI	GCNGC	7 cut(s)	30, 74, 226, 338, 663, 770, 842
BlsI	GCNGC	7 cut(s)	31, 75, 227, 339, 664, 771, 843
Bme1390I	CCNGG	2 cut(s)	168, 381
BmgBI	CACGTC	1 cut(s)	478
BmgT120I	GGNCC	1 cut(s)	512
BmrFI	CCNGG	2 cut(s)	168, 381
BmsI	GCATC	2 cut(s)	256, 773
BpiI	GAAGAC	1 cut(s)	480
BpuMI	CCSGG	1 cut(s)	168
Bse1I	ACTGG	2 cut(s)	443, 842
BseBI	CCWGG	1 cut(s)	381
BseGI	GGATG	2 cut(s)	122, 717
BseNI	ACTGG	2 cut(s)	443, 842
BseXI	GCAGC	4 cut(s)	16, 60, 237, 674
BseYI	CCCAGC	1 cut(s)	514
Bsh1236I	CGCG	1 cut(s)	769
BshFI	GGCC	2 cut(s)	513, 658
BsiHKAI	GWGCWC	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	513, 658
Bsp1286I	GDGCHC	2 cut(s)	549, 858
Bsp143I	GATC	1 cut(s)	588
BspACI	CCGC	4 cut(s)	242, 338, 769, 841
BspANI	GGCC	2 cut(s)	513, 658
BspFNI	CGCG	1 cut(s)	769
BspHI	TCATGA	1 cut(s)	354
BsrI	ACTGG	2 cut(s)	443, 842
BssMI	GATC	1 cut(s)	588
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	461
BstC8I	GCNNGC	2 cut(s)	335, 660
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	122, 717
BstFNI	CGCG	1 cut(s)	769
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	1 cut(s)	591
BstMBI	GATC	1 cut(s)	588
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	2 cut(s)	273, 627
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	2 cut(s)	166, 379
BstUI	CGCG	1 cut(s)	769
BstV1I	GCAGC	4 cut(s)	16, 60, 237, 674
BstV2I	GAAGAC	1 cut(s)	480
BstX2I	RGATCY	1 cut(s)	588
BstYI	RGATCY	1 cut(s)	588
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	2 cut(s)	513, 658
BtgZI	GCGATG	1 cut(s)	750
BtrI	CACGTC	1 cut(s)	478
BtsCI	GGATG	2 cut(s)	122, 717
BtsI	GCAGTG	1 cut(s)	491
BtsIMutI	CAGTG	2 cut(s)	450, 491
Cac8I	GCNNGC	2 cut(s)	335, 660
CciI	TCATGA	1 cut(s)	354
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	512
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	3 cut(s)	270, 355, 624
CviQI	GTAC	1 cut(s)	251
DpnI	GATC	1 cut(s)	590
DpnII	GATC	1 cut(s)	588
DraIII	CACNNNGTG	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	858
Eco91I	GGTNACC	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	379
EcoT22I	ATGCAT	2 cut(s)	271, 625
EcoT38I	GRGCYC	1 cut(s)	858
FaeI	CATG	3 cut(s)	273, 358, 627
FalI	AAGNNNNNCTT	2 cut(s)	16, 48
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	3 cut(s)	269, 354, 623
Fnu4HI	GCNGC	7 cut(s)	30, 74, 226, 338, 663, 770, 842
FokI	GGATG	2 cut(s)	129, 704
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	7 cut(s)	30, 74, 226, 338, 663, 770, 842
FspBI	CTAG	4 cut(s)	77, 401, 654, 809
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	7 cut(s)	30, 74, 226, 338, 663, 770, 842
GsaI	CCCAGC	1 cut(s)	518
HaeII	RGCGCY	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	513, 658
HapII	CCGG	1 cut(s)	167
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	3 cut(s)	273, 358, 627
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HinfI	GANTC	1 cut(s)	613
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	3 cut(s)	395, 643, 832
Hpy166II	GTNNAC	2 cut(s)	251, 420
Hpy188I	TCNGA	1 cut(s)	571
Hpy188III	TCNNGA	4 cut(s)	114, 355, 809, 859
Hpy8I	GTNNAC	2 cut(s)	251, 420
HpyAV	CCTTC	4 cut(s)	302, 517, 817, 845
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	8 cut(s)	145, 190, 269, 392, 598, 623, 758, 764
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	3 cut(s)	273, 358, 627
HspAI	GCGC	1 cut(s)	228
Kzo9I	GATC	1 cut(s)	588
Lsp1109I	GCAGC	4 cut(s)	16, 60, 237, 674
LweI	GCATC	2 cut(s)	256, 773
MaeI	CTAG	4 cut(s)	77, 401, 654, 809
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	1 cut(s)	590
MboI	GATC	1 cut(s)	588
MboII	GAAGA	8 cut(s)	27, 193, 226, 317, 485, 794, 808, 874
MflI	RGATCY	1 cut(s)	588
MhlI	GDGCHC	2 cut(s)	549, 858
MluCI	AATT	6 cut(s)	13, 84, 387, 703, 865, 885
MmeI	TCCRAC	2 cut(s)	74, 177
MnlI	CCTC	4 cut(s)	59, 427, 805, 811
Mph1103I	ATGCAT	2 cut(s)	271, 625
MseI	TTAA	5 cut(s)	20, 237, 291, 375, 828
MslI	CAYNNNNRTG	1 cut(s)	443
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	2 cut(s)	168, 381
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	1 cut(s)	769
MwoI	GCNNNNNNNGC	1 cut(s)	346
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	1 cut(s)	588
NlaIII	CATG	3 cut(s)	273, 358, 627
NsiI	ATGCAT	2 cut(s)	271, 625
NspI	RCATGY	2 cut(s)	273, 627
PagI	TCATGA	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	613
PkrI	GCNGC	7 cut(s)	31, 75, 227, 339, 664, 771, 843
PshBI	ATTAAT	2 cut(s)	237, 291
Psp6I	CCWGG	1 cut(s)	379
PspEI	GGTNACC	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	379
PspPI	GGNCC	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	588
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	443
SaqAI	TTAA	5 cut(s)	20, 237, 291, 375, 828
SatI	GCNGC	7 cut(s)	30, 74, 226, 338, 663, 770, 842
Sau3AI	GATC	1 cut(s)	588
Sau96I	GGNCC	1 cut(s)	512
ScrFI	CCNGG	2 cut(s)	168, 381
SduI	GDGCHC	2 cut(s)	549, 858
SfaNI	GCATC	2 cut(s)	256, 773
SmiMI	CAYNNNNRTG	1 cut(s)	443
Sse9I	AATT	6 cut(s)	13, 84, 387, 703, 865, 885
SsiI	CCGC	4 cut(s)	242, 338, 769, 841
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	4 cut(s)	77, 401, 654, 809
StyD4I	CCNGG	2 cut(s)	166, 379
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	2 cut(s)	9, 816
TasI	AATT	6 cut(s)	13, 84, 387, 703, 865, 885
TatI	WGTACW	1 cut(s)	250
TauI	GCSGC	3 cut(s)	340, 772, 844
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	5 cut(s)	20, 237, 291, 375, 828
Tru9I	TTAA	5 cut(s)	20, 237, 291, 375, 828
TscAI	CASTG	2 cut(s)	450, 491
TseI	GCWGC	4 cut(s)	29, 73, 225, 662
TspDTI	ATGAA	4 cut(s)	227, 309, 371, 864
TspRI	CASTG	2 cut(s)	450, 491
VspI	ATTAAT	2 cut(s)	237, 291
XapI	RAATTY	3 cut(s)	84, 703, 885
XbaI	TCTAGA	1 cut(s)	808
XceI	RCATGY	2 cut(s)	273, 627
XspI	CTAG	4 cut(s)	77, 401, 654, 809
Zsp2I	ATGCAT	2 cut(s)	271, 625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.