Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004575

Physical Location & Seq

Genomic Coordinates Reverse (-)

21874662 .. 21877956

Gene Structure 3295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1257100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGAGCTAGTTCTGCACATGTCCGCAATTCCTCCCAGAGAAAACCCCCTCACCCACTACCGCCACTCCAAATTCCTCGCAACCCAAGACCACCACACCTCTCTCTTCGCCCATTTCTCTATAAACCCACAATTCCAGTCAAAATATCGAAGAAATTGGACCCCAAAACTTGCGTATGCAGCCACAAATCAACGGTTCGGGATCACCGAACAAGAACAAGCCCATGAAGAAGAAGAAGATGCAGAGGAGGAGGAAGAAGAAGAGTACGATTTCTCGGAGGACGAGTCGTCGTTGCTGTCTCTGAGTGAGAAGCCAGACAGAAACATGGCTTTGCTGGATGAGTACGAGATGGAGGAGCTCGAAGATGCCGCTGACCCGAATCATCGGAGCGGGTACGTGGCTGTGCTGGGGAAGCCGAATGTGGGAAAGAGTACGCTCTCGAATCAAATGGTTGGTCAGAAGTTGTCCATTGTTACTGATAAACCTCAGACTACCCGGCATCGAATTCTCGGTATATGTTCTGGCACAGACTATCAGATGATACTTTATGACACACCGGGTGTTATGGAGAAGAGAATGCACAAGTTGGATTCGATGATGATGAAGAATGTTCGCAGTGCTGCGGTTAATGCGGATTGTGTAGTTGTTCTTGTTGATGCATGTAAAGTGCCTGAAAAAATTGATGAAGTGCTGGAAGAAGGCATGGGTAACCAGACGGAAAGCTTGCCACCCATTTTGTTGGTTATGAATAAGAAGGATTTGATTAAACCTGGTGAAATTGCAAAGAAACTAGAGTGGTATGAGAAATTTACAAACGTTGATGAGGTCATACCCGTGAGTGCCAAACTTGGACAGGGAGTGGAAGACGTCAAGCAATGGATTTTATCAAAACTTCCTTTTGGGCCAGCATATTATCCGAAGGACATTGTCAGTGAGCACCCAGAAAGATTCTTTGTATCCGAAATTGTTCGAGAAAAGATCTTTATGCAGTACCGCAAAGAGATTCCTTATTCATGTCAGGTGAATGTCGTGAGCTACAAAACTAGGCCAATGGCGAAGGATTTTATACAAGTGGAAATTGTCGTTGAAAAAAACTCACAGAAGATCATTGTTATTGGAAAAGAAGGGAGAGCTCTGAAACTACTTGCAACAGCTGCGCGGCTTGACATAGAAAATTTCTTGCAGAAGAAAGTCTTCCTAGAGGTTGTAGTGAAGGTTAAAGAGAATTGGCGGCAAGACGAAGTGCTTTTGAAGAATTATGGCTATGGGGGTCAAATTCAAACATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

430

Amino Acids

49.26

Weight (kDa)

5.42

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	133 - 251	2.2e-23	50S ribosome-binding GTPase
FeoB_N	PF02421	133 - 292	1.5e-11	Ferrous iron transport protein B
KH_2	PF07650	334 - 411	5e-16	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66470 AT5G66470
fragaria_vesca	FvH4_1g12880 FvH4_2g39510
malus_domestica	MD02G1143800.v1.1 MD15G1257100.v1.1
prunus_persica	Prupe.7G157900_v2.0.a1 Prupe.7G157900_v2.0.a1
pyrus_communis	pycom02g11370 pycom15g22500
rosa_chinensis	RchiOBHm_Chr2g0100961 RchiOBHm_Chr6g0301441
rosa_laevigata	RLG00000011253 RLG00000012203 RLG00000017029
rosa_multiflora	Rmu_sc0014417.1_g000011
rosa_roxburghii	Rroxscaffold_2G00141710 Rroxscaffold_7G00166820
rosa_rugosa	Rorug02G0094100 Rorug02G0094200 Rorug06G0304700
rosa_samantha	Rh2AG141700 Rh2BG146900 Rh2CG148200 Rh2DG147400 Rh6AG418400 Rh6BG424600 Rh6CG431900 Rh6DG417800
rosa_wichuraiana	Rw2G011120 Rw6G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1288
AatII	GACGTC	1 cut(s)	870
AccBSI	CCGCTC	1 cut(s)	390
AccII	CGCG	1 cut(s)	1159
AciI	CCGC	9 cut(s)	24, 61, 369, 390, 623, 632, 994, 1159, 1231
AclI	AACGTT	1 cut(s)	816
AclWI	GGATC	1 cut(s)	209
AcsI	RAATTY	5 cut(s)	71, 504, 806, 1174, 1275
AcyI	GRCGYC	1 cut(s)	867
AdeI	CACNNNGTG	1 cut(s)	560
AfaI	GTAC	5 cut(s)	266, 344, 395, 433, 992
AfiI	CCNNNNNNNGG	1 cut(s)	422
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	3 cut(s)	1088, 1252, 1280
AhdI	GACNNNNNGTC	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	769
AluBI	AGCT	6 cut(s)	7, 358, 723, 1035, 1133, 1154
AluI	AGCT	6 cut(s)	7, 358, 723, 1035, 1133, 1154
Alw21I	GWGCWC	3 cut(s)	360, 939, 1135
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	209
AoxI	GGCC	2 cut(s)	902, 1046
ApeKI	GCWGC	3 cut(s)	179, 620, 1154
ApoI	RAATTY	5 cut(s)	71, 504, 806, 1174, 1275
ArsI	GACNNNNNNTTYG	2 cut(s)	439, 471
Asp700I	GAANNNNTTC	2 cut(s)	966, 1193
AspLEI	GCGC	1 cut(s)	1159
AspS9I	GGNCC	2 cut(s)	159, 902
AsuC2I	CCSGG	2 cut(s)	496, 558
AsuHPI	GGTGA	4 cut(s)	43, 196, 785, 1033
AvaII	GGWCC	1 cut(s)	159
BanII	GRGCYC	2 cut(s)	360, 1135
BbsI	GAAGAC	2 cut(s)	870, 1186
Bbv12I	GWGCWC	3 cut(s)	360, 939, 1135
BbvI	GCAGC	3 cut(s)	191, 607, 1141
BccI	CCATC	1 cut(s)	343
BciT130I	CCWGG	1 cut(s)	771
BciVI	GTATCC	1 cut(s)	967
BcnI	CCSGG	2 cut(s)	496, 558
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	4 cut(s)	8, 791, 1044, 1199
BfuI	GTATCC	1 cut(s)	967
BglII	AGATCT	1 cut(s)	978
BisI	GCNGC	6 cut(s)	180, 369, 621, 1155, 1160, 1232
BlsI	GCNGC	6 cut(s)	181, 370, 622, 1156, 1161, 1233
Bme1390I	CCNGG	3 cut(s)	496, 558, 771
Bme18I	GGWCC	1 cut(s)	159
BmeRI	GACNNNNNGTC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	159, 902
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	3 cut(s)	496, 558, 771
BmsI	GCATC	4 cut(s)	229, 355, 508, 646
BpiI	GAAGAC	2 cut(s)	870, 1186
BpuMI	CCSGG	2 cut(s)	496, 558
BsaAI	YACGTR	1 cut(s)	397
BsaHI	GRCGYC	1 cut(s)	867
BsaXI	ACNNNNNCTCC	4 cut(s)	50, 80, 269, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse1I	ACTGG	1 cut(s)	136
Bse3DI	GCAATG	1 cut(s)	881
BseBI	CCWGG	1 cut(s)	771
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	1 cut(s)	881
BseMII	CTCAG	2 cut(s)	293, 500
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	3 cut(s)	260, 263, 368
BseXI	GCAGC	3 cut(s)	191, 607, 1141
BseYI	CCCAGC	1 cut(s)	406
Bsh1236I	CGCG	1 cut(s)	1159
BshFI	GGCC	2 cut(s)	904, 1048
BsiHKAI	GWGCWC	3 cut(s)	360, 939, 1135
BsiSI	CCGG	2 cut(s)	496, 557
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	1 cut(s)	303
BsmI	GAATGC	1 cut(s)	582
BsnI	GGCC	2 cut(s)	904, 1048
Bsp1286I	GDGCHC	3 cut(s)	360, 939, 1135
Bsp143I	GATC	3 cut(s)	201, 978, 1104
BspACI	CCGC	9 cut(s)	24, 61, 369, 390, 623, 632, 994, 1159, 1231
BspANI	GGCC	2 cut(s)	904, 1048
BspCNI	CTCAG	2 cut(s)	294, 499
BspFNI	CGCG	1 cut(s)	1159
BspLI	GGNNCC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	881
BsrI	ACTGG	1 cut(s)	136
BssMI	GATC	3 cut(s)	201, 978, 1104
BssNI	GRCGYC	1 cut(s)	867
Bst2UI	CCWGG	1 cut(s)	771
Bst4CI	ACNGT	1 cut(s)	195
Bst6I	CTCTTC	3 cut(s)	110, 255, 566
BstACI	GRCGYC	1 cut(s)	867
BstAPI	GCANNNNNTGC	1 cut(s)	1154
BstBAI	YACGTR	1 cut(s)	397
BstC8I	GCNNGC	2 cut(s)	725, 906
BstDEI	CTNAG	2 cut(s)	302, 486
BstEII	GGTNACC	1 cut(s)	707
BstF5I	GGATG	1 cut(s)	343
BstFNI	CGCG	1 cut(s)	1159
BstHHI	GCGC	1 cut(s)	1159
BstKTI	GATC	3 cut(s)	204, 981, 1107
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	3 cut(s)	201, 978, 1104
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 179, 412, 629, 1154
BstNI	CCWGG	1 cut(s)	771
BstNSI	RCATGY	2 cut(s)	22, 663
BstPI	GGTNACC	1 cut(s)	707
BstSCI	CCNGG	3 cut(s)	494, 556, 769
BstUI	CGCG	1 cut(s)	1159
BstV1I	GCAGC	3 cut(s)	191, 607, 1141
BstV2I	GAAGAC	2 cut(s)	870, 1186
BstX2I	RGATCY	1 cut(s)	978
BstXI	CCANNNNNNTGG	1 cut(s)	739
BstYI	RGATCY	1 cut(s)	978
BsuI	GTATCC	1 cut(s)	967
BsuRI	GGCC	2 cut(s)	904, 1048
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	622
BtsIMutI	CAGTG	2 cut(s)	622, 937
Cac8I	GCNNGC	2 cut(s)	725, 906
CfoI	GCGC	1 cut(s)	1159
Cfr13I	GGNCC	2 cut(s)	159, 902
CsiI	ACCWGGT	1 cut(s)	769
Csp6I	GTAC	5 cut(s)	265, 343, 394, 432, 991
CspCI	CAANNNNNGTGG	2 cut(s)	717, 752
CviAII	CATG	6 cut(s)	19, 224, 325, 660, 703, 1014
CviQI	GTAC	5 cut(s)	265, 343, 394, 432, 991
DdeI	CTNAG	2 cut(s)	302, 486
DpnI	GATC	3 cut(s)	203, 980, 1106
DpnII	GATC	3 cut(s)	201, 978, 1104
DraIII	CACNNNGTG	1 cut(s)	560
DriI	GACNNNNNGTC	1 cut(s)	286
Eam1104I	CTCTTC	3 cut(s)	110, 255, 566
Eam1105I	GACNNNNNGTC	1 cut(s)	286
EarI	CTCTTC	3 cut(s)	110, 255, 566
Ecl136II	GAGCTC	2 cut(s)	358, 1133
Eco24I	GRGCYC	2 cut(s)	360, 1135
Eco47I	GGWCC	1 cut(s)	159
Eco53kI	GAGCTC	2 cut(s)	358, 1133
Eco91I	GGTNACC	1 cut(s)	707
EcoICRI	GAGCTC	2 cut(s)	358, 1133
EcoO65I	GGTNACC	1 cut(s)	707
EcoRI	GAATTC	1 cut(s)	504
EcoRII	CCWGG	1 cut(s)	769
EcoT22I	ATGCAT	1 cut(s)	661
EcoT38I	GRGCYC	2 cut(s)	360, 1135
FaeI	CATG	6 cut(s)	22, 227, 328, 663, 706, 1017
FalI	AAGNNNNNCTT	2 cut(s)	1178, 1210
FatI	CATG	6 cut(s)	18, 223, 324, 659, 702, 1013
FauI	CCCGC	1 cut(s)	383
Fnu4HI	GCNGC	6 cut(s)	180, 369, 621, 1155, 1160, 1232
FokI	GGATG	1 cut(s)	350
FriOI	GRGCYC	2 cut(s)	360, 1135
Fsp4HI	GCNGC	6 cut(s)	180, 369, 621, 1155, 1160, 1232
FspBI	CTAG	4 cut(s)	8, 791, 1044, 1199
GlaI	GCGC	1 cut(s)	1158
GluI	GCNGC	6 cut(s)	180, 369, 621, 1155, 1160, 1232
GsaI	CCCAGC	1 cut(s)	410
HaeIII	GGCC	2 cut(s)	904, 1048
HapII	CCGG	2 cut(s)	496, 557
HhaI	GCGC	1 cut(s)	1159
Hin1I	GRCGYC	1 cut(s)	867
Hin1II	CATG	6 cut(s)	22, 227, 328, 663, 706, 1017
Hin6I	GCGC	1 cut(s)	1157
HinP1I	GCGC	1 cut(s)	1157
HindIII	AAGCTT	1 cut(s)	721
HinfI	GANTC	6 cut(s)	284, 379, 442, 590, 948, 1003
HpaII	CCGG	2 cut(s)	496, 557
HphI	GGTGA	4 cut(s)	43, 196, 785, 1033
Hpy188I	TCNGA	9 cut(s)	277, 303, 387, 459, 489, 537, 918, 961, 1137
Hpy188III	TCNNGA	4 cut(s)	199, 439, 971, 1030
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	6 cut(s)	692, 748, 913, 1051, 1118, 1207
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4IV	ACGT	3 cut(s)	396, 816, 867
HpyCH4V	TGCA	9 cut(s)	16, 179, 242, 580, 659, 782, 988, 1148, 1183
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 179, 412, 629, 1154
HpyF3I	CTNAG	2 cut(s)	302, 486
HpySE526I	ACGT	3 cut(s)	396, 816, 867
Hsp92I	GRCGYC	1 cut(s)	867
Hsp92II	CATG	6 cut(s)	22, 227, 328, 663, 706, 1017
HspAI	GCGC	1 cut(s)	1157
Kzo9I	GATC	3 cut(s)	201, 978, 1104
LmnI	GCTCC	3 cut(s)	4, 355, 387
Lsp1109I	GCAGC	3 cut(s)	191, 607, 1141
LweI	GCATC	4 cut(s)	229, 355, 508, 646
MabI	ACCWGGT	1 cut(s)	769
MaeI	CTAG	4 cut(s)	8, 791, 1044, 1199
MaeII	ACGT	3 cut(s)	396, 816, 867
MaeIII	GTNAC	2 cut(s)	472, 707
MalI	GATC	3 cut(s)	203, 980, 1106
MbiI	CCGCTC	1 cut(s)	390
MboI	GATC	3 cut(s)	201, 978, 1104
MflI	RGATCY	1 cut(s)	978
MhlI	GDGCHC	3 cut(s)	360, 939, 1135
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	567
Mph1103I	ATGCAT	1 cut(s)	661
MroXI	GAANNNNTTC	2 cut(s)	966, 1193
MseI	TTAA	3 cut(s)	627, 765, 1218
MslI	CAYNNNNRTG	1 cut(s)	833
MspA1I	CMGCKG	2 cut(s)	371, 1154
MspI	CCGG	2 cut(s)	496, 557
MspR9I	CCNGG	3 cut(s)	496, 558, 771
Mva1269I	GAATGC	1 cut(s)	582
MvaI	CCWGG	1 cut(s)	771
MvnI	CGCG	1 cut(s)	1159
MwoI	GCNNNNNNNGC	5 cut(s)	13, 179, 412, 629, 1154
NciI	CCSGG	2 cut(s)	496, 558
NdeII	GATC	3 cut(s)	201, 978, 1104
NlaIII	CATG	6 cut(s)	22, 227, 328, 663, 706, 1017
NlaIV	GGNNCC	1 cut(s)	161
NsiI	ATGCAT	1 cut(s)	661
NspI	RCATGY	2 cut(s)	22, 663
PciI	ACATGT	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	1 cut(s)	582
PdmI	GAANNNNTTC	2 cut(s)	966, 1193
PfeI	GAWTC	5 cut(s)	379, 442, 590, 948, 1003
PflFI	GACNNNGTC	1 cut(s)	926
PkrI	GCNGC	6 cut(s)	181, 370, 622, 1156, 1161, 1233
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Ppu21I	YACGTR	1 cut(s)	397
PscI	ACATGT	1 cut(s)	18
PsiI	TTATAA	1 cut(s)	1288
Psp124BI	GAGCTC	2 cut(s)	360, 1135
Psp1406I	AACGTT	1 cut(s)	816
Psp6I	CCWGG	1 cut(s)	769
PspEI	GGTNACC	1 cut(s)	707
PspFI	CCCAGC	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	769
PspN4I	GGNNCC	1 cut(s)	161
PspPI	GGNCC	2 cut(s)	159, 902
PsuI	RGATCY	1 cut(s)	978
PsyI	GACNNNGTC	1 cut(s)	926
PvuII	CAGCTG	1 cut(s)	1154
RsaI	GTAC	5 cut(s)	266, 344, 395, 433, 992
RsaNI	GTAC	5 cut(s)	265, 343, 394, 432, 991
RseI	CAYNNNNRTG	1 cut(s)	833
SacI	GAGCTC	2 cut(s)	360, 1135
SaqAI	TTAA	3 cut(s)	627, 765, 1218
SatI	GCNGC	6 cut(s)	180, 369, 621, 1155, 1160, 1232
Sau3AI	GATC	3 cut(s)	201, 978, 1104
Sau96I	GGNCC	2 cut(s)	159, 902
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	3 cut(s)	496, 558, 771
SduI	GDGCHC	3 cut(s)	360, 939, 1135
SexAI	ACCWGGT	1 cut(s)	769
SfaNI	GCATC	4 cut(s)	229, 355, 508, 646
SinI	GGWCC	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	833
SsiI	CCGC	9 cut(s)	24, 61, 369, 390, 623, 632, 994, 1159, 1231
SspMI	CTAG	4 cut(s)	8, 791, 1044, 1199
SstI	GAGCTC	2 cut(s)	360, 1135
StyD4I	CCNGG	3 cut(s)	494, 556, 769
TaaI	ACNGT	1 cut(s)	195
TaiI	ACGT	3 cut(s)	399, 819, 870
TaqI	TCGA	6 cut(s)	148, 360, 440, 502, 593, 970
TauI	GCSGC	3 cut(s)	371, 1162, 1234
TfiI	GAWTC	5 cut(s)	379, 442, 590, 948, 1003
Tru1I	TTAA	3 cut(s)	627, 765, 1218
Tru9I	TTAA	3 cut(s)	627, 765, 1218
TscAI	CASTG	2 cut(s)	622, 937
TseI	GCWGC	3 cut(s)	179, 620, 1154
TspDTI	ATGAA	5 cut(s)	240, 617, 699, 761, 1002
TspGWI	ACGGA	1 cut(s)	731
TspRI	CASTG	2 cut(s)	622, 937
Tth111I	GACNNNGTC	1 cut(s)	926
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	5 cut(s)	71, 504, 806, 1174, 1275
XceI	RCATGY	2 cut(s)	22, 663
XmnI	GAANNNNTTC	2 cut(s)	966, 1193
XspI	CTAG	4 cut(s)	8, 791, 1044, 1199
ZraI	GACGTC	1 cut(s)	868
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.