Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004575

Physical Location & Seq

Genomic Coordinates Reverse (-)

12252308 .. 12255452

Gene Structure 3145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017029

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGAGCTAGCTCTACACACGTCTGCAACTCTCCCCAGAGATAATTCCCTCACCCATTACACCAATTCCAAAATCCTCACCACCCAACACCACCACAACACTCGTTTTCCACGTTCCACTAGAAAACCCAACTGCCAGGCCAGAATTCCAACAACAACAACCACCTGGAAACTTTCGTCCGCCACAAAACCACCGCTCAGGGTCAGCGAACAACAAAATGGCGAACAAGAAGAAGAAGAAGAAGAAGACTCGGAGTACTCTTATTCCGACGAAGACTCGTCGCTGTTGTCCCTGAGTGAGAAGCCTGACAGAAACATGGCTATGCTTGATGACTACGAGATAGAGGAGCTTGACTATGCTACCGACCCTAACCATAGGAGTGGGTATGTGGCTGTTCTGGGGAAGCCCAATGTGGGAAAGAGTACTCTTTCAAACCAAATGGTTGGTCAGAAATTGTCAATTGTTACTGATAAGCCTCAAACTACAAGGCATAGAATTCTTGGTATATGTTCTGGCTCAGACTATCAGATGATACTTTATGACACACCGGGTGTTATTGAGAAGAAAATGCACAAGTTGGATACTATGATGATGAAGAATGTTCGCAGCGCCGTTATTAATGCGGATTGTGTACTTGTTCTTGTTGATGCATGTAAAGTGCCTGAAAATATTAATGAAGTGGTGGCAGAAGGTGTGGGTAACCAGACAGATAGCCTGCCGCCTACTTTGCTGGTCATGAATAAGAAAGATTTGATTAAGCCAGGTGAAATTGCAAAGAAACTAGAGTGGTATGAGAAGTTTACAAATGTTGATGAGGTCATACCAGTGAGTGCCAAACACGGTCAGGGAGTGGAAGACGTGAAGCAGTGGATATTGTCAAAACTTCCCTTCGGCCCAGCTTATTATCCAAAGGACATCGTAAGTGAGCACCCAGAAAGATTTTTTGTATCAGAAATTGTGAGAGAAAAGATCTTTATGCAATACAGGAAAGAGATTCCTTATGCATGTCAGGTGAATGTTGTGAGCTACAAAACTAGGCCAGCAGCAAAAGATTTTATACAAGTGGAAATCGTTGTTGAGAAAAATTCACAGAAAATCATCCTTATTGGAAAAGATGGGAGAGCTTTGAAACTACTTGCAACGGCATCGCGGCTTGACATAGAAGATTTCTTACAGAAGAAAGTTTTTCTAGAGGTCGAGGTGAAGGTTAAAGAGAACTGGCGGCAAGATGAAGGGCTCTTGAAGAACTATGGCTATGGGGGTCAAATTCAAACATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0022613 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042644 GO:0042646 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_2 MMR_HSR1

Protein Analysis

427

Amino Acids

48.39

Weight (kDa)

6.01

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	130 - 248	2.2e-23	50S ribosome-binding GTPase
FeoB_N	PF02421	130 - 289	1.4e-11	Ferrous iron transport protein B
KH_2	PF07650	331 - 408	7.8e-15	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66470 AT5G66470
fragaria_vesca	FvH4_1g12880 FvH4_2g39510
malus_domestica	MD02G1143800.v1.1 MD15G1257100.v1.1
prunus_persica	Prupe.7G157900_v2.0.a1 Prupe.7G157900_v2.0.a1
pyrus_communis	pycom02g11370 pycom15g22500
rosa_chinensis	RchiOBHm_Chr2g0100961 RchiOBHm_Chr6g0301441
rosa_laevigata	RLG00000011253 RLG00000012203 RLG00000017029
rosa_multiflora	Rmu_sc0014417.1_g000011
rosa_roxburghii	Rroxscaffold_2G00141710 Rroxscaffold_7G00166820
rosa_rugosa	Rorug02G0094100 Rorug02G0094200 Rorug06G0304700
rosa_samantha	Rh2AG141700 Rh2BG146900 Rh2CG148200 Rh2DG147400 Rh6AG418400 Rh6BG424600 Rh6CG431900 Rh6DG417800
rosa_wichuraiana	Rw2G011120 Rw6G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	196
AccII	CGCG	1 cut(s)	1150
AciI	CCGC	6 cut(s)	180, 194, 623, 719, 1150, 1222
AcsI	RAATTY	4 cut(s)	144, 495, 1084, 1266
AdeI	CACNNNGTG	1 cut(s)	551
AfaI	GTAC	3 cut(s)	257, 424, 633
AfiI	CCNNNNNNNGG	1 cut(s)	413
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	4 cut(s)	432, 1129, 1243, 1271
AjiI	CACGTC	2 cut(s)	21, 859
AjnI	CCWGG	3 cut(s)	135, 164, 760
AluBI	AGCT	6 cut(s)	7, 11, 349, 899, 1026, 1124
AluI	AGCT	6 cut(s)	7, 11, 349, 899, 1026, 1124
Alw21I	GWGCWC	1 cut(s)	930
AoxI	GGCC	3 cut(s)	138, 892, 1037
ApeKI	GCWGC	2 cut(s)	606, 1043
ApoI	RAATTY	4 cut(s)	144, 495, 1084, 1266
ArsI	GACNNNNNNTTYG	2 cut(s)	430, 462
AseI	ATTAAT	2 cut(s)	618, 672
AspLEI	GCGC	1 cut(s)	611
AspS9I	GGNCC	1 cut(s)	893
AsuC2I	CCSGG	1 cut(s)	549
AsuHPI	GGTGA	5 cut(s)	43, 70, 776, 1024, 1213
AsuNHI	GCTAGC	1 cut(s)	7
BanII	GRGCYC	1 cut(s)	1239
BarI	GAAGNNNNNNTAC	2 cut(s)	1155, 1187
BbsI	GAAGAC	3 cut(s)	252, 279, 861
Bbv12I	GWGCWC	1 cut(s)	930
BbvI	GCAGC	2 cut(s)	618, 1055
BccI	CCATC	1 cut(s)	1109
BceAI	ACGGC	2 cut(s)	596, 1158
BcgI	CGANNNNNNTGC	2 cut(s)	1128, 1162
BciT130I	CCWGG	3 cut(s)	137, 166, 762
BciVI	GTATCC	1 cut(s)	574
BcnI	CCSGG	1 cut(s)	549
BfaI	CTAG	5 cut(s)	8, 120, 782, 1035, 1190
BfoI	RGCGCY	1 cut(s)	612
BfuI	GTATCC	1 cut(s)	574
BglII	AGATCT	1 cut(s)	969
BisI	GCNGC	5 cut(s)	607, 719, 1044, 1151, 1223
BlsI	GCNGC	5 cut(s)	608, 720, 1045, 1152, 1224
BmcAI	AGTACT	2 cut(s)	257, 424
Bme1390I	CCNGG	4 cut(s)	137, 166, 549, 762
BmgBI	CACGTC	2 cut(s)	21, 859
BmgT120I	GGNCC	1 cut(s)	893
BmrFI	CCNGG	4 cut(s)	137, 166, 549, 762
BmsI	GCATC	2 cut(s)	637, 1154
BmtI	GCTAGC	1 cut(s)	11
BpiI	GAAGAC	3 cut(s)	252, 279, 861
Bpu10I	CCTNAGC	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	549
Bsc4I	CCNNNNNNNGG	1 cut(s)	413
Bse1I	ACTGG	2 cut(s)	824, 1223
BseBI	CCWGG	3 cut(s)	137, 166, 762
BseGI	GGATG	1 cut(s)	1098
BseLI	CCNNNNNNNGG	1 cut(s)	413
BseMII	CTCAG	3 cut(s)	211, 284, 531
BseNI	ACTGG	2 cut(s)	824, 1223
BseRI	GAGGAG	1 cut(s)	359
BseXI	GCAGC	2 cut(s)	618, 1055
BseYI	CCCAGC	1 cut(s)	895
Bsh1236I	CGCG	1 cut(s)	1150
BshFI	GGCC	3 cut(s)	140, 894, 1039
BsiHKAI	GWGCWC	1 cut(s)	930
BsiSI	CCGG	1 cut(s)	548
BslFI	GGGAC	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	274
BsnI	GGCC	3 cut(s)	140, 894, 1039
Bsp1286I	GDGCHC	2 cut(s)	930, 1239
Bsp143I	GATC	1 cut(s)	969
BspACI	CCGC	6 cut(s)	180, 194, 623, 719, 1150, 1222
BspANI	GGCC	3 cut(s)	140, 894, 1039
BspCNI	CTCAG	3 cut(s)	210, 285, 530
BspFNI	CGCG	1 cut(s)	1150
BspHI	TCATGA	1 cut(s)	735
BspOI	GCTAGC	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	196
BsrI	ACTGG	2 cut(s)	824, 1223
BssMI	GATC	1 cut(s)	969
Bst2UI	CCWGG	3 cut(s)	137, 166, 762
Bst4CI	ACNGT	1 cut(s)	842
BstC8I	GCNNGC	3 cut(s)	9, 716, 1041
BstDEI	CTNAG	3 cut(s)	197, 293, 517
BstEII	GGTNACC	1 cut(s)	698
BstF5I	GGATG	1 cut(s)	1098
BstFNI	CGCG	1 cut(s)	1150
BstH2I	RGCGCY	1 cut(s)	612
BstHHI	GCGC	1 cut(s)	611
BstKTI	GATC	1 cut(s)	972
BstMBI	GATC	1 cut(s)	969
BstMWI	GCNNNNNNNGC	1 cut(s)	727
BstNI	CCWGG	3 cut(s)	137, 166, 762
BstNSI	RCATGY	2 cut(s)	654, 1008
BstPI	GGTNACC	1 cut(s)	698
BstSCI	CCNGG	4 cut(s)	135, 164, 547, 760
BstUI	CGCG	1 cut(s)	1150
BstV1I	GCAGC	2 cut(s)	618, 1055
BstV2I	GAAGAC	3 cut(s)	252, 279, 861
BstX2I	RGATCY	1 cut(s)	969
BstXI	CCANNNNNNTGG	2 cut(s)	380, 443
BstYI	RGATCY	1 cut(s)	969
BsuI	GTATCC	1 cut(s)	574
BsuRI	GGCC	3 cut(s)	140, 894, 1039
BtgZI	GCGATG	1 cut(s)	1131
BtrI	CACGTC	2 cut(s)	21, 859
BtsCI	GGATG	1 cut(s)	1098
BtsI	GCAGTG	1 cut(s)	872
BtsIMutI	CAGTG	2 cut(s)	831, 872
Cac8I	GCNNGC	3 cut(s)	9, 716, 1041
CciI	TCATGA	1 cut(s)	735
CfoI	GCGC	1 cut(s)	611
Cfr13I	GGNCC	1 cut(s)	893
Csp6I	GTAC	3 cut(s)	256, 423, 632
CviAII	CATG	4 cut(s)	316, 651, 736, 1005
CviQI	GTAC	3 cut(s)	256, 423, 632
DdeI	CTNAG	3 cut(s)	197, 293, 517
DpnI	GATC	1 cut(s)	971
DpnII	GATC	1 cut(s)	969
DraIII	CACNNNGTG	1 cut(s)	551
EciI	GGCGGA	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	1239
Eco91I	GGTNACC	1 cut(s)	698
EcoO65I	GGTNACC	1 cut(s)	698
EcoRI	GAATTC	2 cut(s)	144, 495
EcoRII	CCWGG	3 cut(s)	135, 164, 760
EcoT22I	ATGCAT	2 cut(s)	652, 1006
EcoT38I	GRGCYC	1 cut(s)	1239
FaeI	CATG	4 cut(s)	319, 654, 739, 1008
FaqI	GGGAC	1 cut(s)	274
FatI	CATG	4 cut(s)	315, 650, 735, 1004
Fnu4HI	GCNGC	5 cut(s)	607, 719, 1044, 1151, 1223
FokI	GGATG	1 cut(s)	1085
FriOI	GRGCYC	1 cut(s)	1239
Fsp4HI	GCNGC	5 cut(s)	607, 719, 1044, 1151, 1223
FspBI	CTAG	5 cut(s)	8, 120, 782, 1035, 1190
GlaI	GCGC	1 cut(s)	610
GluI	GCNGC	5 cut(s)	607, 719, 1044, 1151, 1223
GsaI	CCCAGC	1 cut(s)	899
HaeII	RGCGCY	1 cut(s)	612
HaeIII	GGCC	3 cut(s)	140, 894, 1039
HapII	CCGG	1 cut(s)	548
HhaI	GCGC	1 cut(s)	611
Hin1II	CATG	4 cut(s)	319, 654, 739, 1008
Hin6I	GCGC	1 cut(s)	609
HinP1I	GCGC	1 cut(s)	609
HinfI	GANTC	3 cut(s)	248, 275, 994
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	5 cut(s)	43, 70, 776, 1024, 1213
Hpy166II	GTNNAC	2 cut(s)	632, 801
Hpy188I	TCNGA	6 cut(s)	253, 268, 450, 520, 528, 952
Hpy188III	TCNNGA	3 cut(s)	736, 1190, 1240
Hpy8I	GTNNAC	2 cut(s)	632, 801
Hpy99I	CGWCG	2 cut(s)	272, 283
HpyAV	CCTTC	4 cut(s)	683, 898, 1198, 1226
HpyCH4III	ACNGT	1 cut(s)	842
HpyCH4IV	ACGT	3 cut(s)	20, 112, 858
HpyCH4V	TGCA	7 cut(s)	26, 571, 650, 773, 979, 1004, 1139
HpyF10VI	GCNNNNNNNGC	1 cut(s)	727
HpyF3I	CTNAG	3 cut(s)	197, 293, 517
HpySE526I	ACGT	3 cut(s)	20, 112, 858
Hsp92II	CATG	4 cut(s)	319, 654, 739, 1008
HspAI	GCGC	1 cut(s)	609
Kzo9I	GATC	1 cut(s)	969
LmnI	GCTCC	2 cut(s)	4, 346
Lsp1109I	GCAGC	2 cut(s)	618, 1055
LweI	GCATC	2 cut(s)	637, 1154
MaeI	CTAG	5 cut(s)	8, 120, 782, 1035, 1190
MaeII	ACGT	3 cut(s)	20, 112, 858
MaeIII	GTNAC	2 cut(s)	463, 698
MalI	GATC	1 cut(s)	971
MbiI	CCGCTC	1 cut(s)	196
MboI	GATC	1 cut(s)	969
MfeI	CAATTG	1 cut(s)	459
MflI	RGATCY	1 cut(s)	969
MhlI	GDGCHC	2 cut(s)	930, 1239
MlyI	GAGTC	2 cut(s)	242, 269
MmeI	TCCRAC	3 cut(s)	173, 291, 558
MnlI	CCTC	7 cut(s)	59, 86, 337, 486, 808, 1186, 1192
Mph1103I	ATGCAT	2 cut(s)	652, 1006
MseI	TTAA	4 cut(s)	618, 672, 756, 1209
MslI	CAYNNNNRTG	3 cut(s)	320, 378, 824
MspI	CCGG	1 cut(s)	548
MspR9I	CCNGG	4 cut(s)	137, 166, 549, 762
MunI	CAATTG	1 cut(s)	459
MvaI	CCWGG	3 cut(s)	137, 166, 762
MvnI	CGCG	1 cut(s)	1150
MwoI	GCNNNNNNNGC	1 cut(s)	727
NciI	CCSGG	1 cut(s)	549
NdeII	GATC	1 cut(s)	969
NheI	GCTAGC	1 cut(s)	7
NlaIII	CATG	4 cut(s)	319, 654, 739, 1008
NsiI	ATGCAT	2 cut(s)	652, 1006
NspI	RCATGY	2 cut(s)	654, 1008
PagI	TCATGA	1 cut(s)	735
PcsI	WCGNNNNNNNCGW	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	994
PkrI	GCNGC	5 cut(s)	608, 720, 1045, 1152, 1224
PleI	GAGTC	2 cut(s)	242, 269
PpsI	GAGTC	2 cut(s)	242, 269
PshBI	ATTAAT	2 cut(s)	618, 672
Psp6I	CCWGG	3 cut(s)	135, 164, 760
PspEI	GGTNACC	1 cut(s)	698
PspFI	CCCAGC	1 cut(s)	895
PspGI	CCWGG	3 cut(s)	135, 164, 760
PspPI	GGNCC	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	969
RsaI	GTAC	3 cut(s)	257, 424, 633
RsaNI	GTAC	3 cut(s)	256, 423, 632
RseI	CAYNNNNRTG	3 cut(s)	320, 378, 824
SaqAI	TTAA	4 cut(s)	618, 672, 756, 1209
SatI	GCNGC	5 cut(s)	607, 719, 1044, 1151, 1223
Sau3AI	GATC	1 cut(s)	969
Sau96I	GGNCC	1 cut(s)	893
ScaI	AGTACT	2 cut(s)	257, 424
SchI	GAGTC	2 cut(s)	242, 269
ScrFI	CCNGG	4 cut(s)	137, 166, 549, 762
SduI	GDGCHC	2 cut(s)	930, 1239
SfaNI	GCATC	2 cut(s)	637, 1154
SmiMI	CAYNNNNRTG	3 cut(s)	320, 378, 824
SsiI	CCGC	6 cut(s)	180, 194, 623, 719, 1150, 1222
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	5 cut(s)	8, 120, 782, 1035, 1190
StyD4I	CCNGG	4 cut(s)	135, 164, 547, 760
TaaI	ACNGT	1 cut(s)	842
TaiI	ACGT	3 cut(s)	23, 115, 861
TaqI	TCGA	1 cut(s)	1197
TatI	WGTACW	3 cut(s)	255, 422, 631
TauI	GCSGC	3 cut(s)	721, 1153, 1225
TfiI	GAWTC	1 cut(s)	994
Tru1I	TTAA	4 cut(s)	618, 672, 756, 1209
Tru9I	TTAA	4 cut(s)	618, 672, 756, 1209
TscAI	CASTG	2 cut(s)	831, 872
TseI	GCWGC	2 cut(s)	606, 1043
TspDTI	ATGAA	4 cut(s)	608, 690, 752, 1245
TspRI	CASTG	2 cut(s)	831, 872
VspI	ATTAAT	2 cut(s)	618, 672
XapI	RAATTY	4 cut(s)	144, 495, 1084, 1266
XbaI	TCTAGA	1 cut(s)	1189
XceI	RCATGY	2 cut(s)	654, 1008
XspI	CTAG	5 cut(s)	8, 120, 782, 1035, 1190
ZrmI	AGTACT	2 cut(s)	257, 424
Zsp2I	ATGCAT	2 cut(s)	652, 1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.