Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004575

Physical Location & Seq

Genomic Coordinates Forward (+)

61231387 .. 61233413

Gene Structure 2027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG431900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGAAGAATTGGGGTCTGCTTTTCTGTGCTCTTCTGCTTCTTCAAAATCAGGGAATTCTTTTCCAACAAGTAGAAGCAGAAGATGGGTTTGTGAAAACCAAAGGAGTCCAGTTTATCCTGAATGGAATCCCTTATTATGCACATGGATTCAATGCTTACTGGTTAATGTACATAGCCTCTGACCCATCTCAGAGAAACCTTGTCTCCTCTGCCTTTCAACAAGCTTCCAAAAATGGCCTCACAATTGCAAGAACTTGGGCTTTCAACGATGCTGGTTACAGAGCCTTACAGAACTCTCCCGGCTCCTACAACGAGCAAACTTTCCAGGGGTTGGATTTTGTGGTATCTGAGGCAAGAAAGTATGGGATAAAGTTGGTGCTGAGTTTGGTGAATAGCTATGAGAACTTTGGAGGCAGGAAACAGTATGTGGAATGGGCACGAAGCCAAGGACAGCAGTCTATAAATTCTGAGGATGATTTCTACACCAACTCTGTAGTGAAAGGCTACTACAAAAATCATATCAAGACTGTACTCACGAGAAGGAATAGTCTCACTGGAGTTGCTTACAAAGATGAACCGACTATTATGGCTTGGGAGCTGATGAATGAACCAAGATGCACTTCTGATCCATCAGGAAAAACCATTCAGGCTTGGATCACAGAGATGGCGTCTTACTTGAAATCTATTGATGGAAGTCACTTGCTAGAAGCTGGTCTTGAAGGCTTTTATGGAGAATCAAAGCAGCAAACTAATCCAAAATATTTTGAAGTTGGAACAGATTTTATGGCAAACAATCAGATTCCTGGGATTGACTTTGCCACTGTTCACTCATACCCTGACCAATGGTTAACCGGGTCAAGTTACGAAGACCAAGTCTCCTTCTTGAGCAGTTGGATCAATGATCACATCCAAGATGCACAGAACATTCTTCATAAGCCAGTTCTCTTTGCTGAGTTTGGAAGGTCTTTAAAAGAGTCGGGCTACACCACCAGCCAACGTGACCAGATTTTCAGCACTGTCTACTCGGCTATCTACTCGTCTGCTAGGGGTGGAGGCGCAGCTGTTGGTGGCTTGTTCTGGCAACTTCTAGCTGAAGGAATGGACTCTTTTCAAGACGGGTACGGGGTAGTGTTGAGTGAGAGCTCCTCAACTGTTAGTATAATTGCTGAGGAGTCTCATAGGCTTAACAAGATTCGGAAGATGTATGCCAGGCTGAGAAACATTGAGAAGTGGAAGCGAGCAAGGGATATCAGAAGGGCACAATGGTGGTCTGGAAATAAGGTTAATGATACAGGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000272 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005623 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009845 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0010412 GO:0015923 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044464 GO:0045229 GO:0046355 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090351 GO:1901575 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

433

Amino Acids

48.93

Weight (kDa)

6.68

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH5_mannosidase	PF26410	30 - 361	2.1e-54	GH family 5 beta-mannosidase-like
Cellulase	PF00150	67 - 336	1.4e-11	Cellulase (glycosyl hydrolase family 5)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66470 AT5G66470
fragaria_vesca	FvH4_1g12880 FvH4_2g39510
malus_domestica	MD02G1143800.v1.1 MD15G1257100.v1.1
prunus_persica	Prupe.7G157900_v2.0.a1 Prupe.7G157900_v2.0.a1
pyrus_communis	pycom02g11370 pycom15g22500
rosa_chinensis	RchiOBHm_Chr2g0100961 RchiOBHm_Chr6g0301441
rosa_laevigata	RLG00000011253 RLG00000012203 RLG00000017029
rosa_multiflora	Rmu_sc0014417.1_g000011
rosa_roxburghii	Rroxscaffold_2G00141710 Rroxscaffold_7G00166820
rosa_rugosa	Rorug02G0094100 Rorug02G0094200 Rorug06G0304700
rosa_samantha	Rh2AG141700 Rh2BG146900 Rh2CG148200 Rh2DG147400 Rh6AG418400 Rh6BG424600 Rh6CG431900 Rh6DG417800
rosa_wichuraiana	Rw2G011120 Rw6G036200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	1020
AclWI	GGATC	3 cut(s)	620, 662, 902
AcsI	RAATTY	2 cut(s)	54, 463
AcuI	CTGAAG	1 cut(s)	1113
AcyI	GRCGYC	1 cut(s)	668
AfaI	GTAC	3 cut(s)	170, 531, 1121
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	8 cut(s)	44, 151, 218, 265, 679, 719, 767, 1112
AjnI	CCWGG	3 cut(s)	324, 802, 1208
AjuI	GAANNNNNNNTTGG	2 cut(s)	604, 636
AleI	CACNNNNGTG	1 cut(s)	1264
AluBI	AGCT	7 cut(s)	224, 396, 598, 710, 1061, 1091, 1143
AluI	AGCT	7 cut(s)	224, 396, 598, 710, 1061, 1091, 1143
Alw21I	GWGCWC	2 cut(s)	31, 1145
Alw26I	GTCTC	4 cut(s)	208, 554, 880, 1179
AlwI	GGATC	3 cut(s)	620, 662, 902
AoxI	GGCC	1 cut(s)	235
ApeKI	GCWGC	2 cut(s)	742, 1058
ApoI	RAATTY	2 cut(s)	54, 463
ArsI	GACNNNNNNTTYG	2 cut(s)	858, 890
AspLEI	GCGC	1 cut(s)	1058
AsuC2I	CCSGG	2 cut(s)	300, 853
AsuHPI	GGTGA	1 cut(s)	400
BaeGI	GKGCMC	2 cut(s)	439, 1261
BanII	GRGCYC	1 cut(s)	1145
BauI	CACGAG	1 cut(s)	535
BbsI	GAAGAC	1 cut(s)	873
Bbv12I	GWGCWC	2 cut(s)	31, 1145
BbvCI	CCTCAGC	1 cut(s)	1167
BbvI	GCAGC	2 cut(s)	754, 1070
BccI	CCATC	5 cut(s)	77, 193, 637, 658, 683
BciT130I	CCWGG	3 cut(s)	326, 804, 1210
BclI	TGATCA	1 cut(s)	901
BcnI	CCSGG	2 cut(s)	300, 853
BcoDI	GTCTC	4 cut(s)	208, 554, 880, 1179
BfaI	CTAG	3 cut(s)	704, 1044, 1088
BfmI	CTRYAG	1 cut(s)	492
BisI	GCNGC	2 cut(s)	743, 1059
BlsI	GCNGC	2 cut(s)	744, 1060
Bme1390I	CCNGG	5 cut(s)	300, 326, 804, 853, 1210
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	5 cut(s)	300, 326, 804, 853, 1210
BmsI	GCATC	3 cut(s)	259, 605, 904
BoxI	GACNNNNGTC	1 cut(s)	454
BpiI	GAAGAC	1 cut(s)	873
BplI	GAGNNNNNCTC	2 cut(s)	1130, 1162
BpmI	CTGGAG	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	1167
BpuEI	CTTGAG	1 cut(s)	904
BpuMI	CCSGG	2 cut(s)	300, 853
BsaHI	GRCGYC	1 cut(s)	668
BsaJI	CCNNGG	3 cut(s)	325, 445, 803
BsaXI	ACNNNNNCTCC	4 cut(s)	188, 218, 860, 890
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse1I	ACTGG	4 cut(s)	109, 164, 559, 938
BseBI	CCWGG	3 cut(s)	326, 804, 1210
BseDI	CCNNGG	3 cut(s)	325, 445, 803
BseGI	GGATG	2 cut(s)	478, 906
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	7 cut(s)	203, 339, 371, 459, 942, 1158, 1205
BseNI	ACTGG	4 cut(s)	109, 164, 559, 938
BseRI	GAGGAG	3 cut(s)	196, 1135, 1184
BseSI	GKGCMC	2 cut(s)	439, 1261
BseXI	GCAGC	2 cut(s)	754, 1070
BshFI	GGCC	1 cut(s)	237
BsiHKAI	GWGCWC	2 cut(s)	31, 1145
BsiSI	CCGG	2 cut(s)	300, 852
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	4 cut(s)	208, 554, 880, 1179
BsnI	GGCC	1 cut(s)	237
Bsp1286I	GDGCHC	4 cut(s)	31, 439, 1145, 1261
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	625, 654, 894, 901
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	7 cut(s)	202, 340, 372, 460, 943, 1159, 1206
BspLI	GGNNCC	1 cut(s)	304
BspPI	GGATC	3 cut(s)	620, 662, 902
BspQI	GCTCTTC	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	4 cut(s)	109, 164, 559, 938
BssECI	CCNNGG	3 cut(s)	325, 445, 803
BssMI	GATC	4 cut(s)	625, 654, 894, 901
BssNI	GRCGYC	1 cut(s)	668
BssSI	CACGAG	1 cut(s)	535
BssT1I	CCWWGG	1 cut(s)	445
Bst2BI	CACGAG	1 cut(s)	535
Bst2UI	CCWGG	3 cut(s)	326, 804, 1210
Bst4CI	ACNGT	5 cut(s)	423, 529, 823, 1018, 1153
Bst6I	CTCTTC	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	668
BstAUI	TGTACA	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	1239
BstDEI	CTNAG	7 cut(s)	189, 348, 380, 468, 951, 1167, 1214
BstF5I	GGATG	2 cut(s)	478, 906
BstHHI	GCGC	1 cut(s)	1058
BstKTI	GATC	4 cut(s)	628, 657, 897, 904
BstMAI	GTCTC	4 cut(s)	208, 554, 880, 1179
BstMBI	GATC	4 cut(s)	625, 654, 894, 901
BstNI	CCWGG	3 cut(s)	326, 804, 1210
BstPAI	GACNNNNGTC	1 cut(s)	454
BstSCI	CCNGG	5 cut(s)	298, 324, 802, 851, 1208
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	2 cut(s)	439, 1261
BstV1I	GCAGC	2 cut(s)	754, 1070
BstV2I	GAAGAC	1 cut(s)	873
BsuRI	GGCC	1 cut(s)	237
BtsCI	GGATG	2 cut(s)	478, 906
BtsIMutI	CAGTG	3 cut(s)	552, 819, 1014
Cac8I	GCNNGC	1 cut(s)	1239
CfoI	GCGC	1 cut(s)	1058
CseI	GACGC	1 cut(s)	657
Csp6I	GTAC	3 cut(s)	169, 530, 1120
CviAII	CATG	1 cut(s)	143
CviQI	GTAC	3 cut(s)	169, 530, 1120
DdeI	CTNAG	7 cut(s)	189, 348, 380, 468, 951, 1167, 1214
DpnI	GATC	4 cut(s)	627, 656, 896, 903
DpnII	GATC	4 cut(s)	625, 654, 894, 901
DraI	TTTAAA	1 cut(s)	969
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	1143
Eco130I	CCWWGG	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	1145
Eco32I	GATATC	1 cut(s)	1249
Eco53kI	GAGCTC	1 cut(s)	1143
Eco57I	CTGAAG	1 cut(s)	1113
EcoICRI	GAGCTC	1 cut(s)	1143
EcoRI	GAATTC	1 cut(s)	54
EcoRII	CCWGG	3 cut(s)	324, 802, 1208
EcoRV	GATATC	1 cut(s)	1249
EcoT14I	CCWWGG	1 cut(s)	445
EcoT38I	GRGCYC	1 cut(s)	1145
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	1 cut(s)	146
FalI	AAGNNNNNCTT	4 cut(s)	604, 636, 699, 731
FatI	CATG	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	901
FblI	GTMKAC	1 cut(s)	1020
Fnu4HI	GCNGC	2 cut(s)	743, 1059
FokI	GGATG	2 cut(s)	485, 893
FriOI	GRGCYC	1 cut(s)	1145
Fsp4HI	GCNGC	2 cut(s)	743, 1059
FspBI	CTAG	3 cut(s)	704, 1044, 1088
GlaI	GCGC	1 cut(s)	1057
GluI	GCNGC	2 cut(s)	743, 1059
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	2 cut(s)	300, 852
HgaI	GACGC	1 cut(s)	657
HhaI	GCGC	1 cut(s)	1058
Hin1I	GRCGYC	1 cut(s)	668
Hin1II	CATG	1 cut(s)	146
Hin6I	GCGC	1 cut(s)	1056
HinP1I	GCGC	1 cut(s)	1056
HincII	GTYRAC	1 cut(s)	849
HindII	GTYRAC	1 cut(s)	849
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	9 cut(s)	105, 126, 147, 734, 799, 974, 1103, 1172, 1192
HpaI	GTTAAC	1 cut(s)	849
HpaII	CCGG	2 cut(s)	300, 852
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	3 cut(s)	826, 849, 1021
Hpy188I	TCNGA	8 cut(s)	181, 192, 349, 469, 625, 798, 1197, 1253
Hpy188III	TCNNGA	8 cut(s)	118, 523, 535, 633, 716, 883, 1112, 1272
Hpy8I	GTNNAC	3 cut(s)	826, 849, 1021
HpyAV	CCTTC	6 cut(s)	534, 713, 889, 954, 1088, 1248
HpyCH4III	ACNGT	5 cut(s)	423, 529, 823, 1018, 1153
HpyCH4IV	ACGT	1 cut(s)	997
HpyCH4V	TGCA	4 cut(s)	140, 248, 618, 917
HpyF3I	CTNAG	7 cut(s)	189, 348, 380, 468, 951, 1167, 1214
HpySE526I	ACGT	1 cut(s)	997
Hsp92I	GRCGYC	1 cut(s)	668
Hsp92II	CATG	1 cut(s)	146
HspAI	GCGC	1 cut(s)	1056
Ksp22I	TGATCA	1 cut(s)	901
KspAI	GTTAAC	1 cut(s)	849
Kzo9I	GATC	4 cut(s)	625, 654, 894, 901
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	3 cut(s)	308, 595, 1148
Lsp1109I	GCAGC	2 cut(s)	754, 1070
LweI	GCATC	3 cut(s)	259, 605, 904
MaeI	CTAG	3 cut(s)	704, 1044, 1088
MaeII	ACGT	1 cut(s)	997
MaeIII	GTNAC	4 cut(s)	275, 695, 860, 998
MalI	GATC	4 cut(s)	627, 656, 896, 903
MboI	GATC	4 cut(s)	625, 654, 894, 901
MboII	GAAGA	7 cut(s)	16, 23, 32, 92, 878, 920, 1210
MfeI	CAATTG	1 cut(s)	243
MhlI	GDGCHC	4 cut(s)	31, 439, 1145, 1261
MluCI	AATT	5 cut(s)	7, 54, 243, 463, 1161
MlyI	GAGTC	4 cut(s)	114, 983, 1097, 1181
MmeI	TCCRAC	4 cut(s)	88, 312, 751, 872
MnlI	CCTC	9 cut(s)	187, 217, 248, 343, 404, 463, 1046, 1156, 1162
MseI	TTAA	5 cut(s)	164, 848, 968, 1185, 1284
MslI	CAYNNNNRTG	2 cut(s)	662, 1264
MspA1I	CMGCKG	1 cut(s)	1061
MspI	CCGG	2 cut(s)	300, 852
MspR9I	CCNGG	5 cut(s)	300, 326, 804, 853, 1210
MunI	CAATTG	1 cut(s)	243
MvaI	CCWGG	3 cut(s)	326, 804, 1210
NciI	CCSGG	2 cut(s)	300, 853
NdeII	GATC	4 cut(s)	625, 654, 894, 901
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	304
NmeAIII	GCCGAG	1 cut(s)	1004
NmuCI	GTSAC	2 cut(s)	695, 998
OliI	CACNNNNGTG	1 cut(s)	1264
PciSI	GCTCTTC	1 cut(s)	36
PfeI	GAWTC	5 cut(s)	126, 147, 734, 799, 1192
PflFI	GACNNNGTC	1 cut(s)	872
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	2 cut(s)	744, 1060
PleI	GAGTC	4 cut(s)	113, 982, 1097, 1180
PpsI	GAGTC	4 cut(s)	113, 982, 1097, 1180
PshAI	GACNNNNGTC	1 cut(s)	454
Psp124BI	GAGCTC	1 cut(s)	1145
Psp6I	CCWGG	3 cut(s)	324, 802, 1208
PspGI	CCWGG	3 cut(s)	324, 802, 1208
PspN4I	GGNNCC	1 cut(s)	304
PsyI	GACNNNGTC	1 cut(s)	872
PvuII	CAGCTG	1 cut(s)	1061
RsaI	GTAC	3 cut(s)	170, 531, 1121
RsaNI	GTAC	3 cut(s)	169, 530, 1120
RseI	CAYNNNNRTG	2 cut(s)	662, 1264
SacI	GAGCTC	1 cut(s)	1145
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	5 cut(s)	164, 848, 968, 1185, 1284
SatI	GCNGC	2 cut(s)	743, 1059
Sau3AI	GATC	4 cut(s)	625, 654, 894, 901
SchI	GAGTC	4 cut(s)	114, 983, 1097, 1181
ScrFI	CCNGG	5 cut(s)	300, 326, 804, 853, 1210
SduI	GDGCHC	4 cut(s)	31, 439, 1145, 1261
SfaNI	GCATC	3 cut(s)	259, 605, 904
SfcI	CTRYAG	1 cut(s)	492
SmiMI	CAYNNNNRTG	2 cut(s)	662, 1264
SmlI	CTYRAG	1 cut(s)	883
SmoI	CTYRAG	1 cut(s)	883
Sse9I	AATT	5 cut(s)	7, 54, 243, 463, 1161
SspI	AATATT	1 cut(s)	761
SspMI	CTAG	3 cut(s)	704, 1044, 1088
SstI	GAGCTC	1 cut(s)	1145
StyD4I	CCNGG	5 cut(s)	298, 324, 802, 851, 1208
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	5 cut(s)	423, 529, 823, 1018, 1153
TaiI	ACGT	1 cut(s)	1000
TasI	AATT	5 cut(s)	7, 54, 243, 463, 1161
TatI	WGTACW	2 cut(s)	168, 529
TfiI	GAWTC	5 cut(s)	126, 147, 734, 799, 1192
Tru1I	TTAA	5 cut(s)	164, 848, 968, 1185, 1284
Tru9I	TTAA	5 cut(s)	164, 848, 968, 1185, 1284
TscAI	CASTG	3 cut(s)	559, 826, 1021
TseFI	GTSAC	2 cut(s)	695, 998
TseI	GCWGC	2 cut(s)	742, 1058
Tsp45I	GTSAC	2 cut(s)	695, 998
TspDTI	ATGAA	5 cut(s)	17, 588, 617, 621, 920
TspRI	CASTG	3 cut(s)	559, 826, 1021
Tth111I	GACNNNGTC	1 cut(s)	872
Van91I	CCANNNNNTGG	1 cut(s)	331
XapI	RAATTY	2 cut(s)	54, 463
XmiI	GTMKAC	1 cut(s)	1020
XspI	CTAG	3 cut(s)	704, 1044, 1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.