AT5G66550

Maf-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009805
Physical Location & Seq
Reverse (-)
26559584 .. 26561468
1885 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G66550.1

Sequence Viewer

Length: 624 bp
ATGACGACCAAGGCCATGGAGAGAGGATTTAAGCTGATTCTGGGTTCTCAATCCATGGCGAGAAAGAGGATTTTGGCTGAAATGGGATATGATTACACTATCGTGACTGCAGACATTGATGAGAAAGCTATTAGGACAGAGAAGCCTGAAGATTTGGTTGTGGCTCTTGCTGAAGCCAAGGCAAATGAGATTATATCGAAATTGGGAGGTGAGAGCCAGTTTGCAAAAGATCCTCAACCAACTCTTTTGATTACTGCAGACACTGTTGTTGTGTACAAAGGTGTTATTAGAGAAAAACCAACCACTAAAGAAGAAGCTCGTGAATTTATCAAAGGCTATTCCGGTTCACACGGAGGAGTTGTGGGATCTGTTCTTGTTAGAAACTTGAAAACTGGAGTTAAAAAAGGAGGATGGGACAAAGCTGAGGTTTATTTCCATGAGATACCAGAACAAGTCATTGACGGTCTTATTGATGATGCAATAACTTATAAGGTTGCTGGAGGTTTAACACTGGAGCATCCCCTCATTTCACCCTTTATCGATTCTGTGGTGGGAGGGGTTGATACAGTCATGGGACTTCCTAAAGAACTCACAGAAAAATTCATAAACGATGTGTTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

207

Amino Acids

22.56

Weight (kDa)

5.36

Isoelectric Point (pI)

24.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf PF02545 11 - 203 4.7e-41 Maf-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25500 AT5G66550 AT5G66550 AT5G66550 AT5G66550
fragaria_vesca FvH4_1g13260 FvH4_1g13260
malus_domestica MD02G1147000.v1.1
prunus_persica Prupe.7G155200_v2.0.a1
pyrus_communis pycom02g11630
rosa_chinensis RchiOBHm_Chr2g0101501
rosa_laevigata RLG00000017083
rosa_multiflora Rmu_sc0006153.1_g000022
rosa_roxburghii Rroxscaffold_2G00141290
rosa_rugosa Rorug02G0098000 Rorug02G0098100
rosa_samantha Rh2AG147400 Rh2BG152600 Rh2CG153400 Rh2DG152800
rosa_wichuraiana Rw2G011480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 489
AclWI GGATC 2 cut(s) 224, 373
AcsI RAATTY 2 cut(s) 323, 599
AcuI CTGAAG 2 cut(s) 168, 192
AfaI GTAC 1 cut(s) 275
AgsI TTSAA 1 cut(s) 388
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 4 cut(s) 34, 128, 317, 422
AluI AGCT 4 cut(s) 34, 128, 317, 422
AlwI GGATC 2 cut(s) 224, 373
AlwNI CAGNNNCTG 1 cut(s) 263
AoxI GGCC 1 cut(s) 12
ApoI RAATTY 2 cut(s) 323, 599
AsuHPI GGTGA 2 cut(s) 221, 522
BauI CACGAG 1 cut(s) 318
BbvCI CCTCAGC 1 cut(s) 423
BccI CCATC 1 cut(s) 405
BfmI CTRYAG 2 cut(s) 108, 255
BmsI GCATC 2 cut(s) 466, 526
BpmI CTGGAG 3 cut(s) 414, 519, 533
Bpu10I CCTNAGC 1 cut(s) 423
Bsa29I ATCGAT 1 cut(s) 540
BsaJI CCNNGG 4 cut(s) 9, 15, 54, 177
BsaWI WCCGGW 1 cut(s) 341
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bse1I ACTGG 3 cut(s) 217, 397, 516
BseCI ATCGAT 1 cut(s) 540
BseDI CCNNGG 4 cut(s) 9, 15, 54, 177
BseGI GGATG 2 cut(s) 416, 517
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 3 cut(s) 217, 397, 516
BseRI GAGGAG 1 cut(s) 369
BshFI GGCC 1 cut(s) 14
BshVI ATCGAT 1 cut(s) 540
BsiSI CCGG 1 cut(s) 342
BslFI GGGAC 2 cut(s) 428, 588
BsmFI GGGAC 2 cut(s) 428, 588
BsnI GGCC 1 cut(s) 14
Bsp1407I TGTACA 1 cut(s) 273
Bsp143I GATC 2 cut(s) 229, 365
Bsp19I CCATGG 2 cut(s) 15, 54
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 415
BspDI ATCGAT 1 cut(s) 540
BspMAI CTGCAG 2 cut(s) 112, 259
BspPI GGATC 2 cut(s) 224, 373
BsrGI TGTACA 1 cut(s) 273
BsrI ACTGG 3 cut(s) 217, 397, 516
BssECI CCNNGG 4 cut(s) 9, 15, 54, 177
BssMI GATC 2 cut(s) 229, 365
BssSI CACGAG 1 cut(s) 318
BssT1I CCWWGG 4 cut(s) 9, 15, 54, 177
Bst2BI CACGAG 1 cut(s) 318
Bst4CI ACNGT 3 cut(s) 265, 464, 568
BstAUI TGTACA 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 423
BstDSI CCRYGG 2 cut(s) 15, 54
BstF5I GGATG 2 cut(s) 416, 517
BstKTI GATC 2 cut(s) 232, 368
BstMBI GATC 2 cut(s) 229, 365
BstSFI CTRYAG 2 cut(s) 108, 255
BstX2I RGATCY 2 cut(s) 229, 365
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 2 cut(s) 229, 365
Bsu15I ATCGAT 1 cut(s) 540
BsuRI GGCC 1 cut(s) 14
BsuTUI ATCGAT 1 cut(s) 540
BtgI CCRYGG 2 cut(s) 15, 54
BtsCI GGATG 2 cut(s) 416, 517
BtsIMutI CAGTG 2 cut(s) 261, 509
CaiI CAGNNNCTG 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 540
Csp6I GTAC 1 cut(s) 274
CviAII CATG 4 cut(s) 16, 55, 437, 571
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 1 cut(s) 423
DpnI GATC 2 cut(s) 231, 367
DpnII GATC 2 cut(s) 229, 365
Eco130I CCWWGG 4 cut(s) 9, 15, 54, 177
Eco57I CTGAAG 2 cut(s) 168, 192
EcoT14I CCWWGG 4 cut(s) 9, 15, 54, 177
ErhI CCWWGG 4 cut(s) 9, 15, 54, 177
FaeI CATG 4 cut(s) 19, 58, 440, 574
FaiI YATR 8 cut(s) 17, 56, 90, 194, 438, 489, 572, 605
FaqI GGGAC 2 cut(s) 428, 588
FatI CATG 4 cut(s) 15, 54, 436, 570
FokI GGATG 2 cut(s) 423, 504
GsuI CTGGAG 3 cut(s) 414, 519, 533
HaeIII GGCC 1 cut(s) 14
HapII CCGG 1 cut(s) 342
Hin1II CATG 4 cut(s) 19, 58, 440, 574
HinfI GANTC 2 cut(s) 37, 542
HpaII CCGG 1 cut(s) 342
HphI GGTGA 2 cut(s) 221, 522
Hpy166II GTNNAC 2 cut(s) 274, 347
Hpy188III TCNNGA 2 cut(s) 103, 320
Hpy8I GTNNAC 2 cut(s) 274, 347
HpyCH4III ACNGT 3 cut(s) 265, 464, 568
HpyCH4V TGCA 4 cut(s) 110, 224, 257, 479
HpyF3I CTNAG 1 cut(s) 423
Hsp92II CATG 4 cut(s) 19, 58, 440, 574
Kzo9I GATC 2 cut(s) 229, 365
LmnI GCTCC 1 cut(s) 514
LpnPI CCDG 8 cut(s) 26, 159, 230, 355, 378, 459, 483, 497
LweI GCATC 2 cut(s) 466, 526
MaeIII GTNAC 1 cut(s) 103
MalI GATC 2 cut(s) 231, 367
MboI GATC 2 cut(s) 229, 365
MboII GAAGA 2 cut(s) 161, 323
MflI RGATCY 2 cut(s) 229, 365
MluCI AATT 3 cut(s) 200, 323, 599
MseI TTAA 3 cut(s) 30, 399, 506
MslI CAYNNNNRTG 1 cut(s) 101
MspI CCGG 1 cut(s) 342
NcoI CCATGG 2 cut(s) 15, 54
NdeII GATC 2 cut(s) 229, 365
NlaIII CATG 4 cut(s) 19, 58, 440, 574
NmuCI GTSAC 1 cut(s) 103
OliI CACNNNNGTG 1 cut(s) 101
PfeI GAWTC 2 cut(s) 37, 542
PsiI TTATAA 1 cut(s) 489
PstI CTGCAG 2 cut(s) 112, 259
PstNI CAGNNNCTG 1 cut(s) 263
PsuI RGATCY 2 cut(s) 229, 365
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 3 cut(s) 30, 399, 506
Sau3AI GATC 2 cut(s) 229, 365
SetI ASST 9 cut(s) 36, 130, 211, 283, 319, 424, 429, 495, 505
SfaNI GCATC 2 cut(s) 466, 526
SfcI CTRYAG 2 cut(s) 108, 255
SmiMI CAYNNNNRTG 1 cut(s) 101
Sse9I AATT 3 cut(s) 200, 323, 599
StyI CCWWGG 4 cut(s) 9, 15, 54, 177
TaaI ACNGT 3 cut(s) 265, 464, 568
TaqI TCGA 2 cut(s) 197, 540
TasI AATT 3 cut(s) 200, 323, 599
TatI WGTACW 1 cut(s) 273
TfiI GAWTC 2 cut(s) 37, 542
Tru1I TTAA 3 cut(s) 30, 399, 506
Tru9I TTAA 3 cut(s) 30, 399, 506
TscAI CASTG 2 cut(s) 268, 516
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 592
TspGWI ACGGA 1 cut(s) 366
TspRI CASTG 2 cut(s) 268, 516
XapI RAATTY 2 cut(s) 323, 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.