Rh2BG152600

Maf-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0009805
Physical Location & Seq
Reverse (-)
13104825 .. 13107328
2504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG152600.1

Sequence Viewer

Length: 765 bp
ATGTTTAAGCAAGGAAACATACCGTGGACTAAAACGGTGTCGTATTGGTTAAATATTCGCGAAATTTCGATTTGGACGAACCAAATTGAAGCACTGGCCCAAAATGGAAAGTGGATGCTGAAAAGGGTAAGCTCAGAGAATCAAAAACAACTGTGGAGGAGAAAGATGTCGTTTCAGATAATCTTGGGCTCGGCGTCAATGGCACGACGGCAAATACTGGCGGAGATGGGCTACGAGTTCAAAATCAGGACTGCAGATATAGACGAGAAGAGTATCAGGATGGATAAGCCAGAGGAGTTGGTGATGGTTCTAGCTGAGGCAAAAGCAGATGCTATCATTTCAAGGATACAAAGTAGTGAATTGGATGTTGGTGCTGATCAAACAACACTGTTGATTACTGCAGATACAGTGGTGGTGTATGAAGGGATAATAAGGGAAAAACCGTCCAGCAAGGAAGAAGCATGGGATTTTATCAAAGCCTATTCTGGTGGTCAAGCAGGAGTTATAGGATCTGTACTTGTGACCAACCTTAAAACAGGAAAAAGAAAAGGGGGGTGGCGCAGCGCAGAGGTCTATTTTCACGTCATACCAGAGGAGATTATTGACAACCTGATAGAGGAGGGAACTACACTCAACGTTGCTGGGGGTCTGATGCTTGAACATCCTATGATATCACCCTTTGTAGAAGCAGTGATAGGGACAAGTGACACGGTAATGGGACTGCCTAAAGAACTCACAGAAAAGCTCCTCCATGAAGCACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

254

Amino Acids

28.51

Weight (kDa)

5.59

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf PF02545 59 - 252 7.3e-43 Maf-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25500 AT5G66550 AT5G66550 AT5G66550 AT5G66550
fragaria_vesca FvH4_1g13260 FvH4_1g13260
malus_domestica MD02G1147000.v1.1
prunus_persica Prupe.7G155200_v2.0.a1
pyrus_communis pycom02g11630
rosa_chinensis RchiOBHm_Chr2g0101501
rosa_laevigata RLG00000017083
rosa_multiflora Rmu_sc0006153.1_g000022
rosa_roxburghii Rroxscaffold_2G00141290
rosa_rugosa Rorug02G0098000 Rorug02G0098100
rosa_samantha Rh2AG147400 Rh2BG152600 Rh2CG153400 Rh2DG152800
rosa_wichuraiana Rw2G011480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 60
AciI CCGC 1 cut(s) 221
AclI AACGTT 1 cut(s) 636
AclWI GGATC 1 cut(s) 517
AcsI RAATTY 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 1 cut(s) 516
AfiI CCNNNNNNNGG 1 cut(s) 616
AgsI TTSAA 4 cut(s) 89, 241, 342, 659
AjiI CACGTC 1 cut(s) 583
AjuI GAANNNNNNNTTGG 2 cut(s) 351, 383
AluBI AGCT 3 cut(s) 132, 314, 745
AluI AGCT 3 cut(s) 132, 314, 745
AlwI GGATC 1 cut(s) 517
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 561
ApoI RAATTY 1 cut(s) 63
AspLEI GCGC 2 cut(s) 561, 566
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 313, 666
BaeI ACNNNNGTAYC 2 cut(s) 396, 429
BanII GRGCYC 1 cut(s) 191
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 573
BccI CCATC 3 cut(s) 220, 274, 298
BceAI ACGGC 1 cut(s) 224
BciVI GTATCC 1 cut(s) 339
BclI TGATCA 1 cut(s) 376
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 2 cut(s) 252, 399
BfuI GTATCC 1 cut(s) 339
BisI GCNGC 1 cut(s) 562
BlsI GCNGC 1 cut(s) 563
BmgBI CACGTC 1 cut(s) 583
BmgT120I GGNCC 1 cut(s) 97
BmsI GCATC 3 cut(s) 105, 319, 642
Bpu10I CCTNAGC 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 616
Bse1I ACTGG 2 cut(s) 99, 222
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 4 cut(s) 120, 285, 370, 661
BseLI CCNNNNNNNGG 1 cut(s) 616
BseMII CTCAG 2 cut(s) 147, 306
BseNI ACTGG 2 cut(s) 99, 222
BseRI GAGGAG 5 cut(s) 172, 308, 608, 632, 737
BseXI GCAGC 1 cut(s) 573
BseYI CCCAGC 1 cut(s) 641
Bsh1236I CGCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 98
BslFI GGGAC 2 cut(s) 712, 732
BslI CCNNNNNNNGG 1 cut(s) 616
BsmFI GGGAC 2 cut(s) 712, 732
BsnI GGCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 2 cut(s) 376, 509
Bsp68I TCGCGA 1 cut(s) 60
BspACI CCGC 1 cut(s) 221
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 2 cut(s) 146, 307
BspFNI CGCG 1 cut(s) 60
BspMAI CTGCAG 2 cut(s) 256, 403
BspPI GGATC 1 cut(s) 517
BsrI ACTGG 2 cut(s) 99, 222
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 2 cut(s) 376, 509
BssNI GRCGYC 1 cut(s) 194
Bst4CI ACNGT 7 cut(s) 24, 37, 153, 390, 409, 444, 712
Bst6I CTCTTC 1 cut(s) 263
BstACI GRCGYC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 133, 315
BstDSI CCRYGG 1 cut(s) 23
BstENI CCTNNNNNAGG 1 cut(s) 614
BstF5I GGATG 4 cut(s) 120, 285, 370, 661
BstFNI CGCG 1 cut(s) 60
BstHHI GCGC 2 cut(s) 561, 566
BstKTI GATC 2 cut(s) 379, 512
BstMBI GATC 2 cut(s) 376, 509
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstSFI CTRYAG 2 cut(s) 252, 399
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 573
BstX2I RGATCY 1 cut(s) 509
BstYI RGATCY 1 cut(s) 509
BsuI GTATCC 1 cut(s) 339
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 23
BtrI CACGTC 1 cut(s) 583
BtsCI GGATG 4 cut(s) 120, 285, 370, 661
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 4 cut(s) 92, 386, 414, 696
BtuMI TCGCGA 1 cut(s) 60
CfoI GCGC 2 cut(s) 561, 566
Cfr13I GGNCC 1 cut(s) 97
CseI GACGC 1 cut(s) 183
Csp6I GTAC 1 cut(s) 515
CviAII CATG 2 cut(s) 462, 752
CviJI RGCY 8 cut(s) 98, 132, 189, 231, 289, 314, 479, 745
CviKI_1 RGCY 8 cut(s) 98, 132, 189, 231, 289, 314, 479, 745
CviQI GTAC 1 cut(s) 515
DdeI CTNAG 2 cut(s) 133, 315
DpnI GATC 2 cut(s) 378, 511
DpnII GATC 2 cut(s) 376, 509
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
EciI GGCGGA 1 cut(s) 236
Eco24I GRGCYC 1 cut(s) 191
Eco32I GATATC 1 cut(s) 672
EcoNI CCTNNNNNAGG 1 cut(s) 614
EcoRV GATATC 1 cut(s) 672
EcoT38I GRGCYC 1 cut(s) 191
FaeI CATG 2 cut(s) 465, 755
FaiI YATR 8 cut(s) 20, 260, 420, 463, 506, 587, 668, 753
FaqI GGGAC 2 cut(s) 712, 732
FatI CATG 2 cut(s) 461, 751
FbaI TGATCA 1 cut(s) 376
Fnu4HI GCNGC 1 cut(s) 562
FokI GGATG 4 cut(s) 127, 292, 377, 648
FriOI GRGCYC 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 562
FspBI CTAG 1 cut(s) 311
GlaI GCGC 2 cut(s) 560, 565
GluI GCNGC 1 cut(s) 562
GsaI CCCAGC 1 cut(s) 645
HaeIII GGCC 1 cut(s) 98
HgaI GACGC 1 cut(s) 183
HhaI GCGC 2 cut(s) 561, 566
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 2 cut(s) 465, 755
Hin6I GCGC 2 cut(s) 559, 564
HinP1I GCGC 2 cut(s) 559, 564
HinfI GANTC 1 cut(s) 139
HphI GGTGA 2 cut(s) 313, 666
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 3 cut(s) 136, 177, 651
Hpy188III TCNNGA 3 cut(s) 59, 247, 277
Hpy8I GTNNAC 1 cut(s) 27
Hpy99I CGWCG 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 416
HpyCH4III ACNGT 7 cut(s) 24, 37, 153, 390, 409, 444, 712
HpyCH4IV ACGT 2 cut(s) 582, 636
HpyCH4V TGCA 2 cut(s) 254, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 2 cut(s) 133, 315
HpySE526I ACGT 2 cut(s) 582, 636
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 2 cut(s) 465, 755
HspAI GCGC 2 cut(s) 559, 564
Ksp22I TGATCA 1 cut(s) 376
Kzo9I GATC 2 cut(s) 376, 509
LmnI GCTCC 1 cut(s) 750
Lsp1109I GCAGC 1 cut(s) 573
LweI GCATC 3 cut(s) 105, 319, 642
MaeI CTAG 1 cut(s) 311
MaeII ACGT 2 cut(s) 582, 636
MaeIII GTNAC 2 cut(s) 520, 704
MalI GATC 2 cut(s) 378, 511
MboI GATC 2 cut(s) 376, 509
MboII GAAGA 2 cut(s) 280, 467
MflI RGATCY 1 cut(s) 509
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 3 cut(s) 63, 84, 359
MnlI CCTC 8 cut(s) 150, 286, 310, 562, 586, 610, 613, 758
MseI TTAA 3 cut(s) 6, 50, 531
MslI CAYNNNNRTG 1 cut(s) 713
MteI GCGCNGCGC 1 cut(s) 562
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 200
NdeII GATC 2 cut(s) 376, 509
NlaIII CATG 2 cut(s) 465, 755
NmeAIII GCCGAG 1 cut(s) 170
NmuCI GTSAC 2 cut(s) 520, 704
NruI TCGCGA 1 cut(s) 60
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 1 cut(s) 563
Psp1406I AACGTT 1 cut(s) 636
PspFI CCCAGC 1 cut(s) 641
PspPI GGNCC 1 cut(s) 97
PstI CTGCAG 2 cut(s) 256, 403
PsuI RGATCY 1 cut(s) 509
RruI TCGCGA 1 cut(s) 60
RsaI GTAC 1 cut(s) 516
RsaNI GTAC 1 cut(s) 515
RseI CAYNNNNRTG 1 cut(s) 713
SaqAI TTAA 3 cut(s) 6, 50, 531
SatI GCNGC 1 cut(s) 562
Sau3AI GATC 2 cut(s) 376, 509
Sau96I GGNCC 1 cut(s) 97
SduI GDGCHC 1 cut(s) 191
SetI ASST 8 cut(s) 134, 316, 531, 573, 585, 612, 639, 747
SfaNI GCATC 3 cut(s) 105, 319, 642
SfcI CTRYAG 2 cut(s) 252, 399
SmiMI CAYNNNNRTG 1 cut(s) 713
Sse9I AATT 3 cut(s) 63, 84, 359
SsiI CCGC 1 cut(s) 221
SspI AATATT 1 cut(s) 55
SspMI CTAG 1 cut(s) 311
TaaI ACNGT 7 cut(s) 24, 37, 153, 390, 409, 444, 712
TaiI ACGT 2 cut(s) 585, 639
TaqI TCGA 1 cut(s) 68
TasI AATT 3 cut(s) 63, 84, 359
TatI WGTACW 1 cut(s) 514
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 3 cut(s) 6, 50, 531
Tru9I TTAA 3 cut(s) 6, 50, 531
TscAI CASTG 4 cut(s) 99, 393, 414, 696
TseFI GTSAC 2 cut(s) 520, 704
TseI GCWGC 1 cut(s) 561
Tsp45I GTSAC 2 cut(s) 520, 704
TspDTI ATGAA 1 cut(s) 435
TspRI CASTG 4 cut(s) 99, 393, 414, 696
XagI CCTNNNNNAGG 1 cut(s) 614
XapI RAATTY 1 cut(s) 63
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.