Rorug02G0098000

Maf-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009805
Physical Location & Seq
Forward (+)
8157834 .. 8158605
772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0098000.1

Sequence Viewer

Length: 645 bp
ATGGGTGACGACGACAAAGCTCCTGCTGCACCTGGTTTTAGCATCCCTAATCCCGTCATCTACAGCGTCCTCGGCTTCCTCGGCGTCTTCGGCCTTACGGTCCTGACCATCTTTCTCAGTCTCCGCCCCTCCAAGCCCAGCTTCACCATCCAAGACATCACCGTCTCCTCCTTCAATGTCTCCACCAGCCAACCCTACCGCCTCTCCACCAACATGCAAGTCACCATCTCCTCTCGGAACACCATGTCCCGAGTGGCGATCATCTACGGGGAGATGGAGCTCTACGCCACGTACCGCAACGAGCAGATCACGTTCCGGTACTCCCTCCCCGTGACGTACCAGGAGCACAATGAGTTCGTGGTGTGGTCACCCTACCTGGAGGGCCACGTTGCGGCTATTTCCCCAATTTCGGGGCCCGTTCTGATGCAGGATCTGAACTACGGGGCGGTGTTGGTGATCATCAAGATTGAAGGGCGGTTGAAGTTTAGAGTGGGTGCGTGGACGTCGGTGTACTACCGGTTGTACGGGCACTGCCCGGCGATGATCCAGTTGGGGGACATGGACACCAAGAAGGATTTCGCAGTGTCTGCAAAAGAGTTCAAGTTTCTGTTGGTGCAAAATTGTCAGGTCGAGATTGCTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

214

Amino Acids

24.02

Weight (kDa)

7.74

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25500 AT5G66550 AT5G66550 AT5G66550 AT5G66550
fragaria_vesca FvH4_1g13260 FvH4_1g13260
malus_domestica MD02G1147000.v1.1
prunus_persica Prupe.7G155200_v2.0.a1
pyrus_communis pycom02g11630
rosa_chinensis RchiOBHm_Chr2g0101501
rosa_laevigata RLG00000017083
rosa_multiflora Rmu_sc0006153.1_g000022
rosa_roxburghii Rroxscaffold_2G00141290
rosa_rugosa Rorug02G0098000 Rorug02G0098100
rosa_samantha Rh2AG147400 Rh2BG152600 Rh2CG153400 Rh2DG152800
rosa_wichuraiana Rw2G011480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AatII GACGTC 1 cut(s) 506
AciI CCGC 6 cut(s) 124, 199, 295, 392, 446, 475
AclWI GGATC 2 cut(s) 438, 538
AcyI GRCGYC 2 cut(s) 84, 503
AfaI GTAC 5 cut(s) 293, 320, 338, 512, 524
AfiI CCNNNNNNNGG 4 cut(s) 391, 409, 410, 553
AgeI ACCGGT 1 cut(s) 516
AgsI TTSAA 4 cut(s) 175, 470, 481, 601
AjnI CCWGG 3 cut(s) 31, 339, 375
AjuI GAANNNNNNNTTGG 4 cut(s) 125, 157, 560, 592
AloI GAACNNNNNNTCC 2 cut(s) 230, 262
AluBI AGCT 3 cut(s) 20, 141, 280
AluI AGCT 3 cut(s) 20, 141, 280
Alw21I GWGCWC 2 cut(s) 282, 348
Alw26I GTCTC 3 cut(s) 125, 169, 184
AlwI GGATC 2 cut(s) 438, 538
AlwNI CAGNNNCTG 2 cut(s) 433, 587
Ama87I CYCGRG 1 cut(s) 249
AoxI GGCC 3 cut(s) 91, 382, 413
ApaI GGGCCC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 26
AsiGI ACCGGT 1 cut(s) 516
Asp700I GAANNNNTTC 1 cut(s) 575
AspS9I GGNCC 4 cut(s) 100, 382, 413, 414
AsuC2I CCSGG 1 cut(s) 536
AsuHPI GGTGA 6 cut(s) 17, 136, 151, 214, 360, 466
AvaI CYCGRG 1 cut(s) 249
AvaII GGWCC 1 cut(s) 100
BaeGI GKGCMC 2 cut(s) 417, 531
BanII GRGCYC 2 cut(s) 282, 417
BbsI GAAGAC 1 cut(s) 79
Bbv12I GWGCWC 2 cut(s) 282, 348
BbvI GCAGC 1 cut(s) 13
BccI CCATC 4 cut(s) 116, 155, 233, 268
BciT130I CCWGG 3 cut(s) 33, 341, 377
BclI TGATCA 1 cut(s) 456
BcnI CCSGG 1 cut(s) 536
BcoDI GTCTC 3 cut(s) 125, 169, 184
BfmI CTRYAG 1 cut(s) 61
BisI GCNGC 2 cut(s) 27, 393
BlsI GCNGC 2 cut(s) 28, 394
Bme1390I CCNGG 4 cut(s) 33, 341, 377, 536
Bme18I GGWCC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 249
BmgT120I GGNCC 4 cut(s) 100, 382, 413, 414
BmiI GGNNCC 2 cut(s) 414, 415
BmrFI CCNGG 4 cut(s) 33, 341, 377, 536
BmsI GCATC 2 cut(s) 51, 414
BpiI GAAGAC 1 cut(s) 79
BpmI CTGGAG 1 cut(s) 398
BpuMI CCSGG 1 cut(s) 536
BsaAI YACGTR 1 cut(s) 291
BsaHI GRCGYC 2 cut(s) 84, 503
BsaJI CCNNGG 2 cut(s) 70, 79
BsaWI WCCGGW 2 cut(s) 315, 516
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 4 cut(s) 391, 409, 410, 553
Bse118I RCCGGY 1 cut(s) 516
Bse1I ACTGG 1 cut(s) 547
BseBI CCWGG 3 cut(s) 33, 341, 377
BseDI CCNNGG 2 cut(s) 70, 79
BseGI GGATG 2 cut(s) 42, 147
BseLI CCNNNNNNNGG 4 cut(s) 391, 409, 410, 553
BseMII CTCAG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 547
BseRI GAGGAG 2 cut(s) 157, 220
BseSI GKGCMC 2 cut(s) 417, 531
BseXI GCAGC 1 cut(s) 13
BseYI CCCAGC 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 12
BshFI GGCC 3 cut(s) 93, 384, 415
BshTI ACCGGT 1 cut(s) 516
BsiHKAI GWGCWC 2 cut(s) 282, 348
BsiHKCI CYCGRG 1 cut(s) 249
BsiSI CCGG 3 cut(s) 316, 517, 536
BslFI GGGAC 2 cut(s) 232, 569
BslI CCNNNNNNNGG 4 cut(s) 391, 409, 410, 553
BsmAI GTCTC 3 cut(s) 125, 169, 184
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 2 cut(s) 232, 569
BsnI GGCC 3 cut(s) 93, 384, 415
BsoBI CYCGRG 1 cut(s) 249
Bsp120I GGGCCC 1 cut(s) 413
Bsp1286I GDGCHC 4 cut(s) 282, 348, 417, 531
Bsp143I GATC 5 cut(s) 258, 306, 430, 456, 543
BspACI CCGC 6 cut(s) 124, 199, 295, 392, 446, 475
BspANI GGCC 3 cut(s) 93, 384, 415
BspCNI CTCAG 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 414, 415
BspPI GGATC 2 cut(s) 438, 538
BsrFI RCCGGY 1 cut(s) 516
BsrI ACTGG 1 cut(s) 547
BssAI RCCGGY 1 cut(s) 516
BssECI CCNNGG 2 cut(s) 70, 79
BssMI GATC 5 cut(s) 258, 306, 430, 456, 543
BssNI GRCGYC 2 cut(s) 84, 503
Bst2UI CCWGG 3 cut(s) 33, 341, 377
Bst4CI ACNGT 2 cut(s) 100, 163
BstACI GRCGYC 2 cut(s) 84, 503
BstAPI GCANNNNNTGC 1 cut(s) 587
BstBAI YACGTR 1 cut(s) 291
BstDEI CTNAG 1 cut(s) 116
BstEII GGTNACC 1 cut(s) 366
BstF5I GGATG 2 cut(s) 42, 147
BstKTI GATC 5 cut(s) 261, 309, 433, 459, 546
BstMAI GTCTC 3 cut(s) 125, 169, 184
BstMBI GATC 5 cut(s) 258, 306, 430, 456, 543
BstMWI GCNNNNNNNGC 5 cut(s) 26, 72, 81, 90, 587
BstNI CCWGG 3 cut(s) 33, 341, 377
BstNSI RCATGY 1 cut(s) 217
BstPI GGTNACC 1 cut(s) 366
BstSCI CCNGG 4 cut(s) 31, 339, 375, 534
BstSFI CTRYAG 1 cut(s) 61
BstSLI GKGCMC 2 cut(s) 417, 531
BstV1I GCAGC 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuRI GGCC 3 cut(s) 93, 384, 415
BtgZI GCGATG 1 cut(s) 554
BtsCI GGATG 2 cut(s) 42, 147
BtsI GCAGTG 2 cut(s) 529, 588
BtsIMutI CAGTG 2 cut(s) 529, 588
CaiI CAGNNNCTG 2 cut(s) 433, 587
Cfr10I RCCGGY 1 cut(s) 516
Cfr13I GGNCC 4 cut(s) 100, 382, 413, 414
CseI GACGC 2 cut(s) 55, 73
CsiI ACCWGGT 1 cut(s) 31
Csp6I GTAC 5 cut(s) 292, 319, 337, 511, 523
CspAI ACCGGT 1 cut(s) 516
CviAII CATG 3 cut(s) 214, 244, 559
CviQI GTAC 5 cut(s) 292, 319, 337, 511, 523
DdeI CTNAG 1 cut(s) 116
DpnI GATC 5 cut(s) 260, 308, 432, 458, 545
DpnII GATC 5 cut(s) 258, 306, 430, 456, 543
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
EciI GGCGGA 1 cut(s) 113
Ecl136II GAGCTC 1 cut(s) 280
Eco24I GRGCYC 2 cut(s) 282, 417
Eco47I GGWCC 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 249
Eco91I GGTNACC 1 cut(s) 366
EcoICRI GAGCTC 1 cut(s) 280
EcoO109I RGGNCCY 1 cut(s) 413
EcoO65I GGTNACC 1 cut(s) 366
EcoRII CCWGG 3 cut(s) 31, 339, 375
EcoT38I GRGCYC 2 cut(s) 282, 417
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 3 cut(s) 217, 247, 562
FaiI YATR 3 cut(s) 215, 245, 560
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 2 cut(s) 232, 569
FatI CATG 3 cut(s) 213, 243, 558
FbaI TGATCA 1 cut(s) 456
Fnu4HI GCNGC 2 cut(s) 27, 393
FokI GGATG 2 cut(s) 29, 134
FriOI GRGCYC 2 cut(s) 282, 417
Fsp4HI GCNGC 2 cut(s) 27, 393
GluI GCNGC 2 cut(s) 27, 393
GsaI CCCAGC 1 cut(s) 141
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 3 cut(s) 93, 384, 415
HapII CCGG 3 cut(s) 316, 517, 536
HgaI GACGC 2 cut(s) 55, 73
Hin1I GRCGYC 2 cut(s) 84, 503
Hin1II CATG 3 cut(s) 217, 247, 562
HpaII CCGG 3 cut(s) 316, 517, 536
HphI GGTGA 6 cut(s) 17, 136, 151, 214, 360, 466
Hpy166II GTNNAC 2 cut(s) 501, 511
Hpy188I TCNGA 3 cut(s) 237, 423, 435
Hpy188III TCNNGA 4 cut(s) 103, 249, 463, 631
Hpy8I GTNNAC 2 cut(s) 501, 511
Hpy99I CGWCG 2 cut(s) 14, 508
HpyAV CCTTC 3 cut(s) 181, 464, 565
HpyCH4III ACNGT 2 cut(s) 100, 163
HpyCH4IV ACGT 5 cut(s) 290, 311, 335, 387, 503
HpyCH4V TGCA 5 cut(s) 29, 217, 427, 590, 616
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 72, 81, 90, 587
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 5 cut(s) 290, 311, 335, 387, 503
Hsp92I GRCGYC 2 cut(s) 84, 503
Hsp92II CATG 3 cut(s) 217, 247, 562
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 5 cut(s) 258, 306, 430, 456, 543
LmnI GCTCC 3 cut(s) 25, 277, 343
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 2 cut(s) 51, 414
MabI ACCWGGT 1 cut(s) 31
MaeII ACGT 5 cut(s) 290, 311, 335, 387, 503
MaeIII GTNAC 4 cut(s) 5, 220, 331, 366
MalI GATC 5 cut(s) 260, 308, 432, 458, 545
MboI GATC 5 cut(s) 258, 306, 430, 456, 543
MboII GAAGA 1 cut(s) 79
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 4 cut(s) 282, 348, 417, 531
MluCI AATT 2 cut(s) 405, 619
MnlI CCTC 8 cut(s) 80, 89, 139, 178, 212, 241, 335, 373
MroXI GAANNNNTTC 1 cut(s) 575
MslI CAYNNNNRTG 1 cut(s) 212
MspI CCGG 3 cut(s) 316, 517, 536
MspR9I CCNGG 4 cut(s) 33, 341, 377, 536
MvaI CCWGG 3 cut(s) 33, 341, 377
MwoI GCNNNNNNNGC 5 cut(s) 26, 72, 81, 90, 587
NciI CCSGG 1 cut(s) 536
NdeII GATC 5 cut(s) 258, 306, 430, 456, 543
NlaIII CATG 3 cut(s) 217, 247, 562
NlaIV GGNNCC 2 cut(s) 414, 415
NmeAIII GCCGAG 2 cut(s) 51, 60
NmuCI GTSAC 4 cut(s) 5, 220, 331, 366
NspI RCATGY 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 575
PinAI ACCGGT 1 cut(s) 516
PkrI GCNGC 2 cut(s) 28, 394
Ppu21I YACGTR 1 cut(s) 291
Psp124BI GAGCTC 1 cut(s) 282
Psp6I CCWGG 3 cut(s) 31, 339, 375
PspEI GGTNACC 1 cut(s) 366
PspFI CCCAGC 1 cut(s) 137
PspGI CCWGG 3 cut(s) 31, 339, 375
PspN4I GGNNCC 2 cut(s) 414, 415
PspOMI GGGCCC 1 cut(s) 413
PspPI GGNCC 4 cut(s) 100, 382, 413, 414
PstNI CAGNNNCTG 2 cut(s) 433, 587
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 5 cut(s) 293, 320, 338, 512, 524
RsaNI GTAC 5 cut(s) 292, 319, 337, 511, 523
RseI CAYNNNNRTG 1 cut(s) 212
SacI GAGCTC 1 cut(s) 282
SatI GCNGC 2 cut(s) 27, 393
Sau3AI GATC 5 cut(s) 258, 306, 430, 456, 543
Sau96I GGNCC 4 cut(s) 100, 382, 413, 414
ScrFI CCNGG 4 cut(s) 33, 341, 377, 536
SduI GDGCHC 4 cut(s) 282, 348, 417, 531
SexAI ACCWGGT 1 cut(s) 31
SfaNI GCATC 2 cut(s) 51, 414
SfcI CTRYAG 1 cut(s) 61
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 212
Sse9I AATT 2 cut(s) 405, 619
SsiI CCGC 6 cut(s) 124, 199, 295, 392, 446, 475
SstI GAGCTC 1 cut(s) 282
StyD4I CCNGG 4 cut(s) 31, 339, 375, 534
TaaI ACNGT 2 cut(s) 100, 163
TaiI ACGT 5 cut(s) 293, 314, 338, 390, 506
TaqI TCGA 1 cut(s) 630
TasI AATT 2 cut(s) 405, 619
TatI WGTACW 1 cut(s) 510
TauI GCSGC 1 cut(s) 395
TscAI CASTG 2 cut(s) 536, 588
TseFI GTSAC 4 cut(s) 5, 220, 331, 366
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 4 cut(s) 5, 220, 331, 366
TspRI CASTG 2 cut(s) 536, 588
VpaK11BI GGWCC 1 cut(s) 100
XceI RCATGY 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 575
ZraI GACGTC 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.