FvH4_1g13260

Maf-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009805
Physical Location & Seq
Reverse (-)
7282774 .. 7285129
2356 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13260.t2

Sequence Viewer

Length: 600 bp
ATGTCGTTTCAGATAATCTTGGGCTCGGCGTCAATGGCACGCCGGCAGATACTGGCGGATTTGGGCTACGAGTTCACAATCATGACTGCAGATATAGACGAGAAGAGTATCAGAATGGATAAGCCTGAAGAGTTGGTGATGGTTTTAGCCGAGGCAAAAGCAGATGCTATCATTTCAAGGATGCAAAGTAGTGAGCTGGATGGAGGTGGTGATCAAGCAACACTGTTGATTACTGCAGACACAGTGGTGGTGTATGAAGGGATCATAAGGGAAAAACCATCCAGCAAGGAAGAAGCATGGGAGTTTATCAAAGGCTATTCTGGTGGTCAAGCAGGAGTTATAGGATCTGTACTTGTGACTAACCTTAAAACAGGAAAAAGAAGAGGCGGGTGGCGCAGCGCAGAGGTTTATTTTCATGTCATACCCGATGAGATTATTGGCAACCTAATAGAGGAGGGAACCACACTCAACGTTGCTGGGGGTCTGATGCTTGAACATCCAATGATATCGCCCTTTGTAGAAGCAGTGTTAGGGACAACTGACACAGTAATGGGACTGCCTAAAGAACTCACTGAAAAGCTCATCCATGAAGCGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

200

Amino Acids

21.61

Weight (kDa)

4.7

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf PF02545 4 - 176 1.5e-35 Maf-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25500 AT5G66550 AT5G66550 AT5G66550 AT5G66550
fragaria_vesca FvH4_1g13260 FvH4_1g13260
malus_domestica MD02G1147000.v1.1
prunus_persica Prupe.7G155200_v2.0.a1
pyrus_communis pycom02g11630
rosa_chinensis RchiOBHm_Chr2g0101501
rosa_laevigata RLG00000017083
rosa_multiflora Rmu_sc0006153.1_g000022
rosa_roxburghii Rroxscaffold_2G00141290
rosa_rugosa Rorug02G0098000 Rorug02G0098100
rosa_samantha Rh2AG147400 Rh2BG152600 Rh2CG153400 Rh2DG152800
rosa_wichuraiana Rw2G011480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 56, 387
AclI AACGTT 1 cut(s) 471
AclWI GGATC 2 cut(s) 269, 352
AcuI CTGAAG 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 1 cut(s) 351
AfeI AGCGCT 1 cut(s) 594
AfiI CCNNNNNNNGG 1 cut(s) 451
AgsI TTSAA 2 cut(s) 177, 494
AleI CACNNNNGTG 1 cut(s) 245
AluBI AGCT 2 cut(s) 196, 580
AluI AGCT 2 cut(s) 196, 580
AlwI GGATC 2 cut(s) 269, 352
AlwNI CAGNNNCTG 1 cut(s) 52
Aor51HI AGCGCT 1 cut(s) 594
ApeKI GCWGC 1 cut(s) 396
AspLEI GCGC 3 cut(s) 396, 401, 595
AsuHPI GGTGA 2 cut(s) 148, 221
BanII GRGCYC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 408
BccI CCATC 3 cut(s) 133, 194, 286
BclI TGATCA 1 cut(s) 211
BfmI CTRYAG 2 cut(s) 87, 234
BfoI RGCGCY 1 cut(s) 596
BisI GCNGC 1 cut(s) 397
BlsI GCNGC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 460
BmsI GCATC 3 cut(s) 154, 171, 477
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 5 cut(s) 186, 205, 278, 496, 582
BseLI CCNNNNNNNGG 1 cut(s) 451
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 467
BseXI GCAGC 1 cut(s) 408
BseYI CCCAGC 1 cut(s) 476
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 2 cut(s) 547, 567
BslI CCNNNNNNNGG 1 cut(s) 451
BsmFI GGGAC 2 cut(s) 547, 567
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 3 cut(s) 211, 261, 344
BspACI CCGC 2 cut(s) 56, 387
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 460
BspMAI CTGCAG 2 cut(s) 91, 238
BspPI GGATC 2 cut(s) 269, 352
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 3 cut(s) 211, 261, 344
BssNI GRCGYC 1 cut(s) 29
Bst4CI ACNGT 3 cut(s) 225, 244, 547
Bst6I CTCTTC 3 cut(s) 98, 123, 376
BstACI GRCGYC 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 40, 44
BstENI CCTNNNNNAGG 1 cut(s) 449
BstF5I GGATG 5 cut(s) 186, 205, 278, 496, 582
BstH2I RGCGCY 1 cut(s) 596
BstHHI GCGC 3 cut(s) 396, 401, 595
BstKTI GATC 3 cut(s) 214, 264, 347
BstMBI GATC 3 cut(s) 211, 261, 344
BstMWI GCNNNNNNNGC 2 cut(s) 35, 393
BstSFI CTRYAG 2 cut(s) 87, 234
BstV1I GCAGC 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BtsCI GGATG 5 cut(s) 186, 205, 278, 496, 582
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 4 cut(s) 221, 249, 531, 570
Cac8I GCNNGC 2 cut(s) 40, 44
CaiI CAGNNNCTG 1 cut(s) 52
CciI TCATGA 1 cut(s) 81
CfoI GCGC 3 cut(s) 396, 401, 595
Cfr10I RCCGGY 1 cut(s) 42
CseI GACGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 350
CviAII CATG 4 cut(s) 82, 297, 416, 587
CviJI RGCY 7 cut(s) 24, 66, 124, 149, 196, 315, 580
CviKI_1 RGCY 7 cut(s) 24, 66, 124, 149, 196, 315, 580
CviQI GTAC 1 cut(s) 350
DpnI GATC 3 cut(s) 213, 263, 346
DpnII GATC 3 cut(s) 211, 261, 344
Eam1104I CTCTTC 3 cut(s) 98, 123, 376
EarI CTCTTC 3 cut(s) 98, 123, 376
EciI GGCGGA 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 26
Eco32I GATATC 1 cut(s) 507
Eco47III AGCGCT 1 cut(s) 594
Eco57I CTGAAG 1 cut(s) 147
EcoNI CCTNNNNNAGG 1 cut(s) 449
EcoRV GATATC 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 26
FaeI CATG 4 cut(s) 85, 300, 419, 590
FaiI YATR 9 cut(s) 83, 95, 255, 266, 298, 341, 417, 422, 588
FaqI GGGAC 2 cut(s) 547, 567
FatI CATG 4 cut(s) 81, 296, 415, 586
FauI CCCGC 1 cut(s) 380
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 397
FokI GGATG 5 cut(s) 193, 212, 265, 483, 569
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 397
GlaI GCGC 3 cut(s) 395, 400, 594
GluI GCNGC 1 cut(s) 397
GsaI CCCAGC 1 cut(s) 480
HaeII RGCGCY 1 cut(s) 596
HapII CCGG 1 cut(s) 43
HgaI GACGC 1 cut(s) 18
HhaI GCGC 3 cut(s) 396, 401, 595
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 4 cut(s) 85, 300, 419, 590
Hin6I GCGC 3 cut(s) 394, 399, 593
HinP1I GCGC 3 cut(s) 394, 399, 593
HpaII CCGG 1 cut(s) 43
HphI GGTGA 2 cut(s) 148, 221
Hpy166II GTNNAC 1 cut(s) 75
Hpy188I TCNGA 3 cut(s) 12, 113, 486
Hpy188III TCNNGA 1 cut(s) 82
Hpy8I GTNNAC 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 3 cut(s) 225, 244, 547
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 3 cut(s) 89, 184, 236
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 393
HpySE526I ACGT 1 cut(s) 471
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 4 cut(s) 85, 300, 419, 590
HspAI GCGC 3 cut(s) 394, 399, 593
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 3 cut(s) 211, 261, 344
LpnPI CCDG 9 cut(s) 38, 56, 138, 182, 295, 306, 318, 357, 462
Lsp1109I GCAGC 1 cut(s) 408
LweI GCATC 3 cut(s) 154, 171, 477
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 1 cut(s) 355
MalI GATC 3 cut(s) 213, 263, 346
MboI GATC 3 cut(s) 211, 261, 344
MboII GAAGA 4 cut(s) 115, 140, 302, 393
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 1 cut(s) 26
MnlI CCTC 6 cut(s) 145, 197, 377, 397, 445, 448
MroNI GCCGGC 1 cut(s) 42
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 3 cut(s) 80, 245, 548
MspI CCGG 1 cut(s) 43
MteI GCGCNGCGC 1 cut(s) 397
MwoI GCNNNNNNNGC 2 cut(s) 35, 393
NaeI GCCGGC 1 cut(s) 44
NdeII GATC 3 cut(s) 211, 261, 344
NgoMIV GCCGGC 1 cut(s) 42
NlaIII CATG 4 cut(s) 85, 300, 419, 590
NlaIV GGNNCC 1 cut(s) 460
NmeAIII GCCGAG 2 cut(s) 5, 175
NmuCI GTSAC 1 cut(s) 355
OliI CACNNNNGTG 1 cut(s) 245
PagI TCATGA 1 cut(s) 81
PdiI GCCGGC 1 cut(s) 44
PkrI GCNGC 1 cut(s) 398
Psp1406I AACGTT 1 cut(s) 471
PspFI CCCAGC 1 cut(s) 476
PspN4I GGNNCC 1 cut(s) 460
PstI CTGCAG 2 cut(s) 91, 238
PstNI CAGNNNCTG 1 cut(s) 52
PsuI RGATCY 1 cut(s) 344
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
RseI CAYNNNNRTG 3 cut(s) 80, 245, 548
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 1 cut(s) 397
Sau3AI GATC 3 cut(s) 211, 261, 344
SduI GDGCHC 1 cut(s) 26
SetI ASST 7 cut(s) 198, 208, 366, 408, 447, 474, 582
SfaNI GCATC 3 cut(s) 154, 171, 477
SfcI CTRYAG 2 cut(s) 87, 234
SmiMI CAYNNNNRTG 3 cut(s) 80, 245, 548
SsiI CCGC 2 cut(s) 56, 387
TaaI ACNGT 3 cut(s) 225, 244, 547
TaiI ACGT 1 cut(s) 474
TatI WGTACW 1 cut(s) 349
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 4 cut(s) 228, 249, 531, 577
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 1 cut(s) 396
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 270, 404
TspRI CASTG 4 cut(s) 228, 249, 531, 577
XagI CCTNNNNNAGG 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.