Rw2G011480

Maf-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0009805
Physical Location & Seq
Reverse (-)
11603597 .. 11607207
3611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G011480.1

Sequence Viewer

Length: 609 bp
ATGGAGCGCGTTTACAAAGAGATAATATTGGGCTCGGCGTCAATGGCACGCCGGCAAATACTGGCGGAGATGGGCTACGAGTTCAAAATCAGGACTGCAGATATAGACGAGAAGAGTATCAGGATGGATAAGGCAGAGGAGTTGGTGATGGTTCTAGCTGAGGCAAAAGCAGATGCTATCATTTCAAGGATGCAAAGTAGTGAATTAGATGTTGGTGCTGATCAAACAACACTGTTGATTACTGCAGATACAGTGGTGGTGTATGAAGGGATAATAAGGGAAAAACCGTCCAGCAAGGAAGAAGCATGGGATTTTATCAAAGGCTATTCTGGTGGTCAAGCAGGAGTTATAGGATCTGTACTTGTGACCAACCTTAAAACAGGAAAAAGAAAAGGGGGGTGGCGCAGCGCAGAGGTCTATTTTCACGTCATACCGGAGGAGATTATTGACAACCTGATAGAGGAGGGAACTACACTCAACGTTGCTGGGGGTCTGATGCTTGAACATCCTATGATATCACCCTTTGTAGAAGCAGTGATAGGGACAAGTGACACGGTAATGGGACTGCCTAAAGAACTCACAGAAAAGCTCATCCATGAAGCACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

202

Amino Acids

22.22

Weight (kDa)

4.83

Isoelectric Point (pI)

30.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf PF02545 7 - 200 3.1e-42 Maf-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25500 AT5G66550 AT5G66550 AT5G66550 AT5G66550
fragaria_vesca FvH4_1g13260 FvH4_1g13260
malus_domestica MD02G1147000.v1.1
prunus_persica Prupe.7G155200_v2.0.a1
pyrus_communis pycom02g11630
rosa_chinensis RchiOBHm_Chr2g0101501
rosa_laevigata RLG00000017083
rosa_multiflora Rmu_sc0006153.1_g000022
rosa_roxburghii Rroxscaffold_2G00141290
rosa_rugosa Rorug02G0098000 Rorug02G0098100
rosa_samantha Rh2AG147400 Rh2BG152600 Rh2CG153400 Rh2DG152800
rosa_wichuraiana Rw2G011480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 9
AciI CCGC 1 cut(s) 65
AclI AACGTT 1 cut(s) 480
AclWI GGATC 1 cut(s) 361
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 1 cut(s) 360
AfiI CCNNNNNNNGG 1 cut(s) 460
AgsI TTSAA 3 cut(s) 85, 186, 503
AjiI CACGTC 1 cut(s) 427
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AluBI AGCT 2 cut(s) 158, 589
AluI AGCT 2 cut(s) 158, 589
AlwI GGATC 1 cut(s) 361
ApeKI GCWGC 1 cut(s) 405
AspLEI GCGC 3 cut(s) 9, 405, 410
AsuHPI GGTGA 2 cut(s) 157, 510
BaeI ACNNNNGTAYC 2 cut(s) 240, 273
BanII GRGCYC 1 cut(s) 35
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 1 cut(s) 417
BccI CCATC 3 cut(s) 64, 118, 142
BclI TGATCA 1 cut(s) 220
BfaI CTAG 1 cut(s) 155
BfmI CTRYAG 2 cut(s) 96, 243
BisI GCNGC 1 cut(s) 406
BlsI GCNGC 1 cut(s) 407
BmgBI CACGTC 1 cut(s) 427
BmsI GCATC 3 cut(s) 163, 180, 486
Bpu10I CCTNAGC 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 38
BsaWI WCCGGW 1 cut(s) 433
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 66
BseGI GGATG 4 cut(s) 129, 195, 505, 591
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMII CTCAG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 3 cut(s) 152, 452, 476
BseXI GCAGC 1 cut(s) 417
BseYI CCCAGC 1 cut(s) 485
Bsh1236I CGCG 1 cut(s) 9
BsiSI CCGG 2 cut(s) 52, 434
BslFI GGGAC 2 cut(s) 556, 576
BslI CCNNNNNNNGG 1 cut(s) 460
BsmFI GGGAC 2 cut(s) 556, 576
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 220, 353
BspACI CCGC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 151
BspFNI CGCG 1 cut(s) 9
BspMAI CTGCAG 2 cut(s) 100, 247
BspPI GGATC 1 cut(s) 361
BsrFI RCCGGY 1 cut(s) 51
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 51
BssMI GATC 2 cut(s) 220, 353
BssNI GRCGYC 1 cut(s) 38
Bst4CI ACNGT 4 cut(s) 234, 253, 288, 556
Bst6I CTCTTC 1 cut(s) 107
BstACI GRCGYC 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 49, 53
BstDEI CTNAG 1 cut(s) 159
BstENI CCTNNNNNAGG 1 cut(s) 458
BstF5I GGATG 4 cut(s) 129, 195, 505, 591
BstFNI CGCG 1 cut(s) 9
BstHHI GCGC 3 cut(s) 9, 405, 410
BstKTI GATC 2 cut(s) 223, 356
BstMBI GATC 2 cut(s) 220, 353
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstSFI CTRYAG 2 cut(s) 96, 243
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BtrI CACGTC 1 cut(s) 427
BtsCI GGATG 4 cut(s) 129, 195, 505, 591
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 3 cut(s) 230, 258, 540
Cac8I GCNNGC 2 cut(s) 49, 53
CfoI GCGC 3 cut(s) 9, 405, 410
Cfr10I RCCGGY 1 cut(s) 51
CseI GACGC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 359
CviAII CATG 2 cut(s) 306, 596
CviJI RGCY 5 cut(s) 33, 75, 158, 324, 589
CviKI_1 RGCY 5 cut(s) 33, 75, 158, 324, 589
CviQI GTAC 1 cut(s) 359
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 222, 355
DpnII GATC 2 cut(s) 220, 353
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
EciI GGCGGA 1 cut(s) 80
Eco24I GRGCYC 1 cut(s) 35
Eco32I GATATC 1 cut(s) 516
EcoNI CCTNNNNNAGG 1 cut(s) 458
EcoRV GATATC 1 cut(s) 516
EcoT38I GRGCYC 1 cut(s) 35
FaeI CATG 2 cut(s) 309, 599
FaiI YATR 7 cut(s) 104, 264, 307, 350, 431, 512, 597
FaqI GGGAC 2 cut(s) 556, 576
FatI CATG 2 cut(s) 305, 595
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 406
FokI GGATG 4 cut(s) 136, 202, 492, 578
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 406
FspBI CTAG 1 cut(s) 155
GlaI GCGC 3 cut(s) 8, 404, 409
GluI GCNGC 1 cut(s) 406
GsaI CCCAGC 1 cut(s) 489
HapII CCGG 2 cut(s) 52, 434
HgaI GACGC 1 cut(s) 27
HhaI GCGC 3 cut(s) 9, 405, 410
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 2 cut(s) 309, 599
Hin6I GCGC 3 cut(s) 7, 403, 408
HinP1I GCGC 3 cut(s) 7, 403, 408
HpaII CCGG 2 cut(s) 52, 434
HphI GGTGA 2 cut(s) 157, 510
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 495
Hpy188III TCNNGA 2 cut(s) 91, 121
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 4 cut(s) 234, 253, 288, 556
HpyCH4IV ACGT 2 cut(s) 426, 480
HpyCH4V TGCA 3 cut(s) 98, 193, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 2 cut(s) 426, 480
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 2 cut(s) 309, 599
HspAI GCGC 3 cut(s) 7, 403, 408
KroI GCCGGC 1 cut(s) 51
KroNI GCCGGC 1 cut(s) 53
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 2 cut(s) 220, 353
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 417
LweI GCATC 3 cut(s) 163, 180, 486
MaeI CTAG 1 cut(s) 155
MaeII ACGT 2 cut(s) 426, 480
MaeIII GTNAC 2 cut(s) 364, 548
MalI GATC 2 cut(s) 222, 355
MboI GATC 2 cut(s) 220, 353
MboII GAAGA 2 cut(s) 124, 311
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 1 cut(s) 203
MnlI CCTC 6 cut(s) 130, 154, 406, 430, 454, 457
MroNI GCCGGC 1 cut(s) 51
MseI TTAA 1 cut(s) 375
MslI CAYNNNNRTG 1 cut(s) 557
MspI CCGG 2 cut(s) 52, 434
MteI GCGCNGCGC 1 cut(s) 406
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 1 cut(s) 44
NaeI GCCGGC 1 cut(s) 53
NdeII GATC 2 cut(s) 220, 353
NgoMIV GCCGGC 1 cut(s) 51
NlaIII CATG 2 cut(s) 309, 599
NmeAIII GCCGAG 1 cut(s) 14
NmuCI GTSAC 2 cut(s) 364, 548
PdiI GCCGGC 1 cut(s) 53
PkrI GCNGC 1 cut(s) 407
Psp1406I AACGTT 1 cut(s) 480
PspFI CCCAGC 1 cut(s) 485
PstI CTGCAG 2 cut(s) 100, 247
PsuI RGATCY 1 cut(s) 353
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 557
SaqAI TTAA 1 cut(s) 375
SatI GCNGC 1 cut(s) 406
Sau3AI GATC 2 cut(s) 220, 353
SduI GDGCHC 1 cut(s) 35
SetI ASST 7 cut(s) 160, 375, 417, 429, 456, 483, 591
SfaNI GCATC 3 cut(s) 163, 180, 486
SfcI CTRYAG 2 cut(s) 96, 243
SmiMI CAYNNNNRTG 1 cut(s) 557
Sse9I AATT 1 cut(s) 203
SsiI CCGC 1 cut(s) 65
SspI AATATT 1 cut(s) 27
SspMI CTAG 1 cut(s) 155
TaaI ACNGT 4 cut(s) 234, 253, 288, 556
TaiI ACGT 2 cut(s) 429, 483
TasI AATT 1 cut(s) 203
TatI WGTACW 1 cut(s) 358
Tru1I TTAA 1 cut(s) 375
Tru9I TTAA 1 cut(s) 375
TscAI CASTG 3 cut(s) 237, 258, 540
TseFI GTSAC 2 cut(s) 364, 548
TseI GCWGC 1 cut(s) 405
Tsp45I GTSAC 2 cut(s) 364, 548
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 3 cut(s) 237, 258, 540
XagI CCTNNNNNAGG 1 cut(s) 458
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.