Rroxscaffold_2G00141290

Maf-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009805
Physical Location & Seq
Forward (+)
79568811 .. 79571028
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00141290.1

Sequence Viewer

Length: 660 bp
ATGCTGAAAAGGGTAAGCTCAGAGAATCAAAAACAACTGTGGAGGAGAAAGATGTCGTTTCAGATAATCTTGGGCTCGGCGTCAATGGCACGCCGGCAAATACTGGCGGAGATGGGCTACGAGTTCAAAATCATGACTGCAGATATAGACGAGAAGAGTATCAGGATGGATAAGCCAGAGGAGTTGGTGATGGTTCTAGCTGAGGCAAAAGCAGATGCTATCATTTCAAGGATGCAAAGTAGTGAATTGGATGTTGGTGCTGATCAAACAACACTGTTGATTACTGCAGATACAGATGATGACTTGAATCATATACTTTGGATAATAAGGGAAAAACCGTCCAGCAAGGAAGAAGCGTGGGATTTTATCAAAGGCTATTCTGGTGGTCAAGCAGGAGTTATAGGATCTGTACTTGTGACCAACCTTAAAACAGGAAAAAGAAAAGGGGCGTGGCGCAGCGCAGAGGTCTATTTTCACGTCATACCAGAGGAGATTATTGACAACCTGATAGAGGAGGGAACTACACTCAACGTTGCTGGGGGTCTGATGCTTGAACATCCTATGATATCACCCTTTGTAGAAGCAGTGATAGGGACAAGTGACACAGTAATGGGACTGCCTAAAGAACTCACAGAAAAGCTCATCCATGAAGCACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

219

Amino Acids

24.43

Weight (kDa)

5.05

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf PF02545 21 - 217 5.6e-40 Maf-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25500 AT5G66550 AT5G66550 AT5G66550 AT5G66550
fragaria_vesca FvH4_1g13260 FvH4_1g13260
malus_domestica MD02G1147000.v1.1
prunus_persica Prupe.7G155200_v2.0.a1
pyrus_communis pycom02g11630
rosa_chinensis RchiOBHm_Chr2g0101501
rosa_laevigata RLG00000017083
rosa_multiflora Rmu_sc0006153.1_g000022
rosa_roxburghii Rroxscaffold_2G00141290
rosa_rugosa Rorug02G0098000 Rorug02G0098100
rosa_samantha Rh2AG147400 Rh2BG152600 Rh2CG153400 Rh2DG152800
rosa_wichuraiana Rw2G011480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AclI AACGTT 1 cut(s) 531
AclWI GGATC 1 cut(s) 412
AcyI GRCGYC 1 cut(s) 80
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 1 cut(s) 511
AgsI TTSAA 4 cut(s) 127, 228, 307, 554
AjiI CACGTC 1 cut(s) 478
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AluBI AGCT 3 cut(s) 18, 200, 640
AluI AGCT 3 cut(s) 18, 200, 640
AlwI GGATC 1 cut(s) 412
ApeKI GCWGC 1 cut(s) 456
AspLEI GCGC 2 cut(s) 456, 461
AsuHPI GGTGA 2 cut(s) 199, 561
BanII GRGCYC 1 cut(s) 77
BbvCI CCTCAGC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 468
BccI CCATC 3 cut(s) 106, 160, 184
BclI TGATCA 1 cut(s) 262
BfaI CTAG 1 cut(s) 197
BfmI CTRYAG 2 cut(s) 138, 285
BisI GCNGC 1 cut(s) 457
BlsI GCNGC 1 cut(s) 458
BmgBI CACGTC 1 cut(s) 478
BmsI GCATC 3 cut(s) 205, 222, 537
Bpu10I CCTNAGC 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 511
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 108
BseGI GGATG 5 cut(s) 171, 237, 256, 556, 642
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMII CTCAG 2 cut(s) 33, 192
BseNI ACTGG 1 cut(s) 108
BseRI GAGGAG 4 cut(s) 58, 194, 503, 527
BseXI GCAGC 1 cut(s) 468
BseYI CCCAGC 1 cut(s) 536
BsiSI CCGG 1 cut(s) 94
BslFI GGGAC 2 cut(s) 607, 627
BslI CCNNNNNNNGG 1 cut(s) 511
BsmFI GGGAC 2 cut(s) 607, 627
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 2 cut(s) 262, 404
BspACI CCGC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 32, 193
BspHI TCATGA 1 cut(s) 132
BspMAI CTGCAG 2 cut(s) 142, 289
BspPI GGATC 1 cut(s) 412
BsrFI RCCGGY 1 cut(s) 93
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 93
BssMI GATC 2 cut(s) 262, 404
BssNI GRCGYC 1 cut(s) 80
Bst4CI ACNGT 4 cut(s) 39, 276, 339, 607
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 91, 95
BstDEI CTNAG 2 cut(s) 19, 201
BstENI CCTNNNNNAGG 1 cut(s) 509
BstF5I GGATG 5 cut(s) 171, 237, 256, 556, 642
BstHHI GCGC 2 cut(s) 456, 461
BstKTI GATC 2 cut(s) 265, 407
BstMBI GATC 2 cut(s) 262, 404
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstSFI CTRYAG 2 cut(s) 138, 285
BstV1I GCAGC 1 cut(s) 468
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BtrI CACGTC 1 cut(s) 478
BtsCI GGATG 5 cut(s) 171, 237, 256, 556, 642
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 2 cut(s) 272, 591
Cac8I GCNNGC 2 cut(s) 91, 95
CciI TCATGA 1 cut(s) 132
CfoI GCGC 2 cut(s) 456, 461
Cfr10I RCCGGY 1 cut(s) 93
CseI GACGC 1 cut(s) 69
Csp6I GTAC 1 cut(s) 410
CviAII CATG 2 cut(s) 133, 647
CviJI RGCY 7 cut(s) 18, 75, 117, 175, 200, 375, 640
CviKI_1 RGCY 7 cut(s) 18, 75, 117, 175, 200, 375, 640
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 2 cut(s) 19, 201
DpnI GATC 2 cut(s) 264, 406
DpnII GATC 2 cut(s) 262, 404
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EciI GGCGGA 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 77
Eco32I GATATC 1 cut(s) 567
EcoNI CCTNNNNNAGG 1 cut(s) 509
EcoRV GATATC 1 cut(s) 567
EcoT38I GRGCYC 1 cut(s) 77
FaeI CATG 2 cut(s) 136, 650
FaiI YATR 8 cut(s) 134, 146, 312, 314, 401, 482, 563, 648
FaqI GGGAC 2 cut(s) 607, 627
FatI CATG 2 cut(s) 132, 646
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 457
FokI GGATG 5 cut(s) 178, 244, 263, 543, 629
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 457
FspBI CTAG 1 cut(s) 197
GlaI GCGC 2 cut(s) 455, 460
GluI GCNGC 1 cut(s) 457
GsaI CCCAGC 1 cut(s) 540
HapII CCGG 1 cut(s) 94
HgaI GACGC 1 cut(s) 69
HhaI GCGC 2 cut(s) 456, 461
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 2 cut(s) 136, 650
Hin6I GCGC 2 cut(s) 454, 459
HinP1I GCGC 2 cut(s) 454, 459
HinfI GANTC 2 cut(s) 25, 307
HpaII CCGG 1 cut(s) 94
HphI GGTGA 2 cut(s) 199, 561
Hpy188I TCNGA 3 cut(s) 22, 63, 546
Hpy188III TCNNGA 2 cut(s) 133, 163
HpyCH4III ACNGT 4 cut(s) 39, 276, 339, 607
HpyCH4IV ACGT 2 cut(s) 477, 531
HpyCH4V TGCA 3 cut(s) 140, 235, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 19, 201
HpySE526I ACGT 2 cut(s) 477, 531
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 2 cut(s) 136, 650
HspAI GCGC 2 cut(s) 454, 459
KroI GCCGGC 1 cut(s) 93
KroNI GCCGGC 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 2 cut(s) 262, 404
Lsp1109I GCAGC 1 cut(s) 468
LweI GCATC 3 cut(s) 205, 222, 537
MaeI CTAG 1 cut(s) 197
MaeII ACGT 2 cut(s) 477, 531
MaeIII GTNAC 2 cut(s) 415, 599
MalI GATC 2 cut(s) 264, 406
MboI GATC 2 cut(s) 262, 404
MboII GAAGA 2 cut(s) 166, 362
MflI RGATCY 1 cut(s) 404
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 1 cut(s) 245
MnlI CCTC 7 cut(s) 36, 172, 196, 457, 481, 505, 508
MroNI GCCGGC 1 cut(s) 93
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 1 cut(s) 608
MspI CCGG 1 cut(s) 94
MteI GCGCNGCGC 1 cut(s) 457
MwoI GCNNNNNNNGC 1 cut(s) 86
NaeI GCCGGC 1 cut(s) 95
NdeII GATC 2 cut(s) 262, 404
NgoMIV GCCGGC 1 cut(s) 93
NlaIII CATG 2 cut(s) 136, 650
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 2 cut(s) 415, 599
PagI TCATGA 1 cut(s) 132
PdiI GCCGGC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 25, 307
PkrI GCNGC 1 cut(s) 458
Psp1406I AACGTT 1 cut(s) 531
PspFI CCCAGC 1 cut(s) 536
PstI CTGCAG 2 cut(s) 142, 289
PsuI RGATCY 1 cut(s) 404
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
RseI CAYNNNNRTG 1 cut(s) 608
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 1 cut(s) 457
Sau3AI GATC 2 cut(s) 262, 404
SduI GDGCHC 1 cut(s) 77
SetI ASST 8 cut(s) 20, 202, 426, 468, 480, 507, 534, 642
SfaNI GCATC 3 cut(s) 205, 222, 537
SfcI CTRYAG 2 cut(s) 138, 285
SmiMI CAYNNNNRTG 1 cut(s) 608
Sse9I AATT 1 cut(s) 245
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 197
TaaI ACNGT 4 cut(s) 39, 276, 339, 607
TaiI ACGT 2 cut(s) 480, 534
TasI AATT 1 cut(s) 245
TatI WGTACW 1 cut(s) 409
TfiI GAWTC 2 cut(s) 25, 307
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 2 cut(s) 279, 591
TseFI GTSAC 2 cut(s) 415, 599
TseI GCWGC 1 cut(s) 456
Tsp45I GTSAC 2 cut(s) 415, 599
TspRI CASTG 2 cut(s) 279, 591
XagI CCTNNNNNAGG 1 cut(s) 509
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.