Rh2CG153400

Maf-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0009805
Physical Location & Seq
Reverse (-)
13353875 .. 13355712
1838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG153400.1

Sequence Viewer

Length: 312 bp
ATGTCGTTTCAGATAATCTTGGGCTCGGCGTCAATGGCACGCCGGCAAATACTGGCGGAGATGGGCTACGAGTTCAAAATCAGGACTGCAGATATAGACGAGAAGAGTATCAGGATGGATAAGCCAGAGGAGTTGGTGATGGTTCTAGCTGAGGCAAAAATCGAGGAGGGAACTACACTCAACGTTGCTGGGGGTCTGATCCTTGAACATCCTATGATATCACCCTTTGTAGAAGCAGTGATAGGGACAAGTGACACGGTAATGGGACTGCCTAAAGAACTCACAGAAAAGCTCATCCATGAAGCACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

103

Amino Acids

11.36

Weight (kDa)

4.74

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf PF02545 4 - 56 1.9e-11 Maf-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25500 AT5G66550 AT5G66550 AT5G66550 AT5G66550
fragaria_vesca FvH4_1g13260 FvH4_1g13260
malus_domestica MD02G1147000.v1.1
prunus_persica Prupe.7G155200_v2.0.a1
pyrus_communis pycom02g11630
rosa_chinensis RchiOBHm_Chr2g0101501
rosa_laevigata RLG00000017083
rosa_multiflora Rmu_sc0006153.1_g000022
rosa_roxburghii Rroxscaffold_2G00141290
rosa_rugosa Rorug02G0098000 Rorug02G0098100
rosa_samantha Rh2AG147400 Rh2BG152600 Rh2CG153400 Rh2DG152800
rosa_wichuraiana Rw2G011480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 56
AclI AACGTT 1 cut(s) 183
AclWI GGATC 1 cut(s) 193
AcyI GRCGYC 1 cut(s) 29
AgsI TTSAA 2 cut(s) 76, 206
AluBI AGCT 2 cut(s) 149, 292
AluI AGCT 2 cut(s) 149, 292
AlwI GGATC 1 cut(s) 193
AsuHPI GGTGA 2 cut(s) 148, 213
BanII GRGCYC 1 cut(s) 26
BbvCI CCTCAGC 1 cut(s) 150
BccI CCATC 3 cut(s) 55, 109, 133
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 29
Bse118I RCCGGY 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 57
BseGI GGATG 3 cut(s) 120, 208, 294
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 2 cut(s) 143, 179
BseYI CCCAGC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 2 cut(s) 259, 279
BsmFI GGGAC 2 cut(s) 259, 279
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 1 cut(s) 198
BspACI CCGC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 142
BspMAI CTGCAG 1 cut(s) 91
BspPI GGATC 1 cut(s) 193
BsrFI RCCGGY 1 cut(s) 42
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 42
BssMI GATC 1 cut(s) 198
BssNI GRCGYC 1 cut(s) 29
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 98
BstACI GRCGYC 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 40, 44
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 3 cut(s) 120, 208, 294
BstKTI GATC 1 cut(s) 201
BstMBI GATC 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 87
BtsCI GGATG 3 cut(s) 120, 208, 294
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 2 cut(s) 40, 44
Cfr10I RCCGGY 1 cut(s) 42
CseI GACGC 1 cut(s) 18
CviAII CATG 1 cut(s) 299
CviJI RGCY 5 cut(s) 24, 66, 124, 149, 292
CviKI_1 RGCY 5 cut(s) 24, 66, 124, 149, 292
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
EciI GGCGGA 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 26
Eco32I GATATC 1 cut(s) 219
EcoRV GATATC 1 cut(s) 219
EcoT38I GRGCYC 1 cut(s) 26
FaeI CATG 1 cut(s) 302
FaiI YATR 3 cut(s) 95, 215, 300
FaqI GGGAC 2 cut(s) 259, 279
FatI CATG 1 cut(s) 298
FokI GGATG 3 cut(s) 127, 195, 281
FriOI GRGCYC 1 cut(s) 26
FspBI CTAG 1 cut(s) 146
GsaI CCCAGC 1 cut(s) 192
HapII CCGG 1 cut(s) 43
HgaI GACGC 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 1 cut(s) 302
HpaII CCGG 1 cut(s) 43
HphI GGTGA 2 cut(s) 148, 213
Hpy188I TCNGA 2 cut(s) 12, 198
Hpy188III TCNNGA 2 cut(s) 82, 112
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 1 cut(s) 89
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 183
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 1 cut(s) 302
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
Kzo9I GATC 1 cut(s) 198
LpnPI CCDG 6 cut(s) 38, 56, 67, 97, 138, 174
MaeI CTAG 1 cut(s) 146
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 251
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 26
MnlI CCTC 4 cut(s) 121, 145, 157, 160
MroNI GCCGGC 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 1 cut(s) 43
MwoI GCNNNNNNNGC 1 cut(s) 35
NaeI GCCGGC 1 cut(s) 44
NdeII GATC 1 cut(s) 198
NgoMIV GCCGGC 1 cut(s) 42
NlaIII CATG 1 cut(s) 302
NmeAIII GCCGAG 1 cut(s) 5
NmuCI GTSAC 1 cut(s) 251
PdiI GCCGGC 1 cut(s) 44
Psp1406I AACGTT 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 188
PstI CTGCAG 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 260
Sau3AI GATC 1 cut(s) 198
SduI GDGCHC 1 cut(s) 26
SetI ASST 3 cut(s) 151, 186, 294
SfcI CTRYAG 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 260
SsiI CCGC 1 cut(s) 56
SspMI CTAG 1 cut(s) 146
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 162
TscAI CASTG 1 cut(s) 243
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
TspRI CASTG 1 cut(s) 243
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.