Rh2DG152800

Maf-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0009805
Physical Location & Seq
Reverse (-)
12820265 .. 12822566
2302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG152800.1

Sequence Viewer

Length: 483 bp
ATGTCGTTTCAGATAATCTTGGGCTCGGCGTCAATGGCACGACGGCAAATACTGGCGGAGATGGGCTACGAGTTCAAAATCAGGACTGCAGATATAGACGAGAAGAGTATCAGGATGGATAAGCCAGAGGAGTTGGTGATGGTTCTAGCTGAGGCAAAAGCAGATGCTATCATTTCAAGGATACAAAGTAGTGAATTGGATGTTGGTGCTGATCAAACAACACTGTTGATTACTGCAGATACAGTGGTGGTGTATGAAGGGATAATAAGGGAAAAACCGTCCAGCAAGGAAGAAGCATGGGATTTTATCAAAGCCTATTCTGGTGGTCAAGCAGGAGTTATAGGATCTGTACTTGTGACCAACCTTAAAACAGGAAAAAGAAAAGGGGGGTGGCGCAGCGCAGAGGTCTATTTTCACGTCATACCAGAGGAGATTATTGACAACCTGAGGAGGGAACTACACTCAACGTTGCTGGGGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

160

Amino Acids

17.74

Weight (kDa)

5.3

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf PF02545 4 - 148 8.6e-30 Maf-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25500 AT5G66550 AT5G66550 AT5G66550 AT5G66550
fragaria_vesca FvH4_1g13260 FvH4_1g13260
malus_domestica MD02G1147000.v1.1
prunus_persica Prupe.7G155200_v2.0.a1
pyrus_communis pycom02g11630
rosa_chinensis RchiOBHm_Chr2g0101501
rosa_laevigata RLG00000017083
rosa_multiflora Rmu_sc0006153.1_g000022
rosa_roxburghii Rroxscaffold_2G00141290
rosa_rugosa Rorug02G0098000 Rorug02G0098100
rosa_samantha Rh2AG147400 Rh2BG152600 Rh2CG153400 Rh2DG152800
rosa_wichuraiana Rw2G011480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 56
AclI AACGTT 1 cut(s) 467
AclWI GGATC 1 cut(s) 352
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 1 cut(s) 451
AgsI TTSAA 2 cut(s) 76, 177
AjiI CACGTC 1 cut(s) 418
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
AlwI GGATC 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 396
AspLEI GCGC 2 cut(s) 396, 401
AsuHPI GGTGA 1 cut(s) 148
AxyI CCTNAGG 1 cut(s) 446
BaeI ACNNNNGTAYC 2 cut(s) 231, 264
BanII GRGCYC 1 cut(s) 26
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 408
BccI CCATC 3 cut(s) 55, 109, 133
BceAI ACGGC 1 cut(s) 59
BciVI GTATCC 1 cut(s) 174
BclI TGATCA 1 cut(s) 211
BfaI CTAG 1 cut(s) 146
BfmI CTRYAG 2 cut(s) 87, 234
BfuI GTATCC 1 cut(s) 174
BisI GCNGC 1 cut(s) 397
BlsI GCNGC 1 cut(s) 398
BmgBI CACGTC 1 cut(s) 418
BmsI GCATC 1 cut(s) 154
Bpu10I CCTNAGC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse1I ACTGG 1 cut(s) 57
Bse21I CCTNAGG 1 cut(s) 446
BseGI GGATG 2 cut(s) 120, 205
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMII CTCAG 2 cut(s) 141, 437
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 3 cut(s) 143, 443, 463
BseXI GCAGC 1 cut(s) 408
BseYI CCCAGC 1 cut(s) 472
BslI CCNNNNNNNGG 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 2 cut(s) 211, 344
BspACI CCGC 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 142, 438
BspMAI CTGCAG 2 cut(s) 91, 238
BspPI GGATC 1 cut(s) 352
BsrI ACTGG 1 cut(s) 57
BssMI GATC 2 cut(s) 211, 344
BssNI GRCGYC 1 cut(s) 29
Bst4CI ACNGT 3 cut(s) 225, 244, 279
Bst6I CTCTTC 1 cut(s) 98
BstACI GRCGYC 1 cut(s) 29
BstDEI CTNAG 2 cut(s) 150, 446
BstF5I GGATG 2 cut(s) 120, 205
BstHHI GCGC 2 cut(s) 396, 401
BstKTI GATC 2 cut(s) 214, 347
BstMBI GATC 2 cut(s) 211, 344
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSFI CTRYAG 2 cut(s) 87, 234
BstV1I GCAGC 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
Bsu36I CCTNAGG 1 cut(s) 446
BsuI GTATCC 1 cut(s) 174
BtrI CACGTC 1 cut(s) 418
BtsCI GGATG 2 cut(s) 120, 205
BtsIMutI CAGTG 2 cut(s) 221, 249
CfoI GCGC 2 cut(s) 396, 401
CseI GACGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 350
CviAII CATG 1 cut(s) 297
CviJI RGCY 5 cut(s) 24, 66, 124, 149, 314
CviKI_1 RGCY 5 cut(s) 24, 66, 124, 149, 314
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 2 cut(s) 150, 446
DpnI GATC 2 cut(s) 213, 346
DpnII GATC 2 cut(s) 211, 344
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
EciI GGCGGA 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 26
Eco81I CCTNAGG 1 cut(s) 446
EcoT38I GRGCYC 1 cut(s) 26
FaeI CATG 1 cut(s) 300
FaiI YATR 5 cut(s) 95, 255, 298, 341, 422
FatI CATG 1 cut(s) 296
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 397
FokI GGATG 2 cut(s) 127, 212
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 397
FspBI CTAG 1 cut(s) 146
GlaI GCGC 2 cut(s) 395, 400
GluI GCNGC 1 cut(s) 397
GsaI CCCAGC 1 cut(s) 476
HgaI GACGC 1 cut(s) 18
HhaI GCGC 2 cut(s) 396, 401
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 1 cut(s) 300
Hin6I GCGC 2 cut(s) 394, 399
HinP1I GCGC 2 cut(s) 394, 399
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 12, 482
Hpy188III TCNNGA 2 cut(s) 82, 112
Hpy99I CGWCG 1 cut(s) 45
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 3 cut(s) 225, 244, 279
HpyCH4IV ACGT 2 cut(s) 417, 467
HpyCH4V TGCA 2 cut(s) 89, 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 2 cut(s) 150, 446
HpySE526I ACGT 2 cut(s) 417, 467
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 1 cut(s) 300
HspAI GCGC 2 cut(s) 394, 399
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 2 cut(s) 211, 344
Lsp1109I GCAGC 1 cut(s) 408
LweI GCATC 1 cut(s) 154
MaeI CTAG 1 cut(s) 146
MaeII ACGT 2 cut(s) 417, 467
MaeIII GTNAC 1 cut(s) 355
MalI GATC 2 cut(s) 213, 346
MboI GATC 2 cut(s) 211, 344
MboII GAAGA 2 cut(s) 115, 302
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 1 cut(s) 194
MnlI CCTC 6 cut(s) 121, 145, 397, 421, 441, 444
MseI TTAA 1 cut(s) 366
MteI GCGCNGCGC 1 cut(s) 397
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 2 cut(s) 211, 344
NlaIII CATG 1 cut(s) 300
NmeAIII GCCGAG 1 cut(s) 5
NmuCI GTSAC 1 cut(s) 355
PkrI GCNGC 1 cut(s) 398
Psp1406I AACGTT 1 cut(s) 467
PspFI CCCAGC 1 cut(s) 472
PstI CTGCAG 2 cut(s) 91, 238
PsuI RGATCY 1 cut(s) 344
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 1 cut(s) 397
Sau3AI GATC 2 cut(s) 211, 344
SduI GDGCHC 1 cut(s) 26
SetI ASST 6 cut(s) 151, 366, 408, 420, 447, 470
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 2 cut(s) 87, 234
Sse9I AATT 1 cut(s) 194
SsiI CCGC 1 cut(s) 56
SspMI CTAG 1 cut(s) 146
TaaI ACNGT 3 cut(s) 225, 244, 279
TaiI ACGT 2 cut(s) 420, 470
TasI AATT 1 cut(s) 194
TatI WGTACW 1 cut(s) 349
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 2 cut(s) 228, 249
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 1 cut(s) 396
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 1 cut(s) 270
TspRI CASTG 2 cut(s) 228, 249
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.