MD02G1147000.v1.1

Maf-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0009805
Physical Location & Seq
Reverse (-)
12154717 .. 12157092
2376 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1147000.v1.1.491

Sequence Viewer

Length: 600 bp
ATGTCGTTTCAGATAATTCTCGGGTCGGCGTCGGCGGCGCGCCGGCAAATACTGGCGGAGATGGGATACCGGTTCACTGTCATGACTGCAGATATTGATGAAAAAAGTATAAGGATGGATAAGCCTGAAGAACTGGTCATGGTTTTAGCTGAGGCCAAAGCAGATGCCATTATTTCAAGGCTCCAAAGTGATAAACAATTGGATGGGGATGCTCCTGCAACACTGTTGGTTACCGCAGACACGGTGGTGGTGTATGAAGGGATAGTAAGGGAAAAACCATCCAGCAAGGAAGAAGCATGGAATTTTATCAAAGGCTATTCCGGCGGTCAAGCAGAAGTTATAGGATCTGTACTTGTAACCAACCTTAAAACCGGAAAAAGAAAAGGCAGTTGGCGCAGAGCGGAGGTTTATTTTCATGTCATACCAGAGGAGGTTATCCATAGCCTGATAGAGGAGGGAATTACGCTCAATGTTGCTGGCGGTTTGATGCTGGAACATCCATTGATTTCTCCGTTTGTAGAAGCAGTGATAGGGACGACTGACACGGTTATGGGATTGCCTAAAGAACTTACAGAGAAGCTCATTCAGGAAGCAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Maf

Protein Analysis

200

Amino Acids

21.79

Weight (kDa)

5.0

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Maf PF02545 4 - 197 5.6e-43 Maf-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009805)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25500 AT5G66550 AT5G66550 AT5G66550 AT5G66550
fragaria_vesca FvH4_1g13260 FvH4_1g13260
malus_domestica MD02G1147000.v1.1
prunus_persica Prupe.7G155200_v2.0.a1
pyrus_communis pycom02g11630
rosa_chinensis RchiOBHm_Chr2g0101501
rosa_laevigata RLG00000017083
rosa_multiflora Rmu_sc0006153.1_g000022
rosa_roxburghii Rroxscaffold_2G00141290
rosa_rugosa Rorug02G0098000 Rorug02G0098100
rosa_samantha Rh2AG147400 Rh2BG152600 Rh2CG153400 Rh2DG152800
rosa_wichuraiana Rw2G011480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 401
AccII CGCG 1 cut(s) 40
AciI CCGC 6 cut(s) 35, 56, 234, 324, 401, 480
AclWI GGATC 1 cut(s) 352
AcsI RAATTY 1 cut(s) 301
AcuI CTGAAG 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 1 cut(s) 451
AgeI ACCGGT 1 cut(s) 69
AgsI TTSAA 1 cut(s) 177
AjuI GAANNNNNNNTTGG 2 cut(s) 373, 405
AleI CACNNNNGTG 1 cut(s) 245
AluBI AGCT 2 cut(s) 149, 580
AluI AGCT 2 cut(s) 149, 580
AlwI GGATC 1 cut(s) 352
Ama87I CYCGRG 1 cut(s) 20
AoxI GGCC 1 cut(s) 153
ApoI RAATTY 1 cut(s) 301
AscI GGCGCGCC 1 cut(s) 38
AsiGI ACCGGT 1 cut(s) 69
AspLEI GCGC 3 cut(s) 40, 42, 396
AvaI CYCGRG 1 cut(s) 20
BbvCI CCTCAGC 1 cut(s) 150
BccI CCATC 4 cut(s) 55, 109, 197, 286
BciVI GTATCC 1 cut(s) 59
BfmI CTRYAG 1 cut(s) 87
BfuI GTATCC 1 cut(s) 59
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmeT110I CYCGRG 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 182
BmsI GCATC 3 cut(s) 154, 199, 477
Bpu10I CCTNAGC 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 29
BsaWI WCCGGW 2 cut(s) 69, 371
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse118I RCCGGY 2 cut(s) 42, 69
Bse1I ACTGG 2 cut(s) 57, 138
BseGI GGATG 5 cut(s) 120, 208, 214, 278, 496
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 2 cut(s) 57, 138
BsePI GCGCGC 1 cut(s) 38
BseRI GAGGAG 2 cut(s) 443, 467
Bsh1236I CGCG 1 cut(s) 40
BshFI GGCC 1 cut(s) 155
BshTI ACCGGT 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 4 cut(s) 43, 70, 321, 372
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 1 cut(s) 451
BsmFI GGGAC 1 cut(s) 547
BsnI GGCC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 20
Bsp143I GATC 1 cut(s) 344
BspACI CCGC 6 cut(s) 35, 56, 234, 324, 401, 480
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 1 cut(s) 40
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 182
BspMAI CTGCAG 1 cut(s) 91
BspPI GGATC 1 cut(s) 352
BsrBI CCGCTC 1 cut(s) 401
BsrFI RCCGGY 2 cut(s) 42, 69
BsrI ACTGG 2 cut(s) 57, 138
BssAI RCCGGY 2 cut(s) 42, 69
BssHII GCGCGC 1 cut(s) 38
BssMI GATC 1 cut(s) 344
BssNI GRCGYC 1 cut(s) 29
Bst4CI ACNGT 4 cut(s) 79, 225, 244, 547
BstACI GRCGYC 1 cut(s) 29
BstC8I GCNNGC 3 cut(s) 40, 44, 478
BstDEI CTNAG 1 cut(s) 150
BstEII GGTNACC 1 cut(s) 229
BstENI CCTNNNNNAGG 1 cut(s) 449
BstF5I GGATG 5 cut(s) 120, 208, 214, 278, 496
BstFNI CGCG 1 cut(s) 40
BstHHI GCGC 3 cut(s) 40, 42, 396
BstKTI GATC 1 cut(s) 347
BstMBI GATC 1 cut(s) 344
BstMWI GCNNNNNNNGC 3 cut(s) 35, 321, 393
BstPI GGTNACC 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 87
BstUI CGCG 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BsuI GTATCC 1 cut(s) 59
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 5 cut(s) 120, 208, 214, 278, 496
BtsI GCAGTG 1 cut(s) 531
BtsIMutI CAGTG 3 cut(s) 75, 221, 531
Cac8I GCNNGC 3 cut(s) 40, 44, 478
CciI TCATGA 1 cut(s) 81
CfoI GCGC 3 cut(s) 40, 42, 396
Cfr10I RCCGGY 2 cut(s) 42, 69
CseI GACGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 350
CspAI ACCGGT 1 cut(s) 69
CviAII CATG 4 cut(s) 82, 139, 297, 416
CviJI RGCY 7 cut(s) 124, 149, 155, 181, 315, 444, 580
CviKI_1 RGCY 7 cut(s) 124, 149, 155, 181, 315, 444, 580
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 346
DpnII GATC 1 cut(s) 344
EciI GGCGGA 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 20
Eco91I GGTNACC 1 cut(s) 229
EcoNI CCTNNNNNAGG 1 cut(s) 449
EcoO65I GGTNACC 1 cut(s) 229
FaeI CATG 4 cut(s) 85, 142, 300, 419
FaqI GGGAC 1 cut(s) 547
FatI CATG 4 cut(s) 81, 138, 296, 415
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 5 cut(s) 127, 215, 221, 265, 483
Fsp4HI GCNGC 1 cut(s) 36
GlaI GCGC 3 cut(s) 39, 41, 395
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 155
HapII CCGG 4 cut(s) 43, 70, 321, 372
HgaI GACGC 1 cut(s) 18
HhaI GCGC 3 cut(s) 40, 42, 396
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 4 cut(s) 85, 142, 300, 419
Hin6I GCGC 3 cut(s) 38, 40, 394
HinP1I GCGC 3 cut(s) 38, 40, 394
HpaII CCGG 4 cut(s) 43, 70, 321, 372
Hpy166II GTNNAC 1 cut(s) 75
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 2 cut(s) 82, 587
Hpy8I GTNNAC 1 cut(s) 75
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 4 cut(s) 79, 225, 244, 547
HpyCH4V TGCA 2 cut(s) 89, 218
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 321, 393
HpyF3I CTNAG 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 4 cut(s) 85, 142, 300, 419
HspAI GCGC 3 cut(s) 38, 40, 394
KroI GCCGGC 1 cut(s) 42
KroNI GCCGGC 1 cut(s) 44
Kzo9I GATC 1 cut(s) 344
LmnI GCTCC 2 cut(s) 186, 217
LweI GCATC 3 cut(s) 154, 199, 477
MaeIII GTNAC 2 cut(s) 229, 355
MalI GATC 1 cut(s) 346
MbiI CCGCTC 1 cut(s) 401
MboI GATC 1 cut(s) 344
MboII GAAGA 2 cut(s) 140, 302
MfeI CAATTG 1 cut(s) 197
MflI RGATCY 1 cut(s) 344
MluCI AATT 4 cut(s) 15, 197, 301, 459
MnlI CCTC 6 cut(s) 145, 397, 421, 424, 445, 448
MroNI GCCGGC 1 cut(s) 42
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 3 cut(s) 80, 245, 548
MspI CCGG 4 cut(s) 43, 70, 321, 372
MunI CAATTG 1 cut(s) 197
MvnI CGCG 1 cut(s) 40
MwoI GCNNNNNNNGC 3 cut(s) 35, 321, 393
NaeI GCCGGC 1 cut(s) 44
NdeII GATC 1 cut(s) 344
NgoMIV GCCGGC 1 cut(s) 42
NlaIII CATG 4 cut(s) 85, 142, 300, 419
NlaIV GGNNCC 1 cut(s) 182
OliI CACNNNNGTG 1 cut(s) 245
PagI TCATGA 1 cut(s) 81
PalAI GGCGCGCC 1 cut(s) 38
PauI GCGCGC 1 cut(s) 38
PdiI GCCGGC 1 cut(s) 44
PinAI ACCGGT 1 cut(s) 69
PkrI GCNGC 1 cut(s) 37
PspEI GGTNACC 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 182
PstI CTGCAG 1 cut(s) 91
PsuI RGATCY 1 cut(s) 344
PteI GCGCGC 1 cut(s) 38
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
RseI CAYNNNNRTG 3 cut(s) 80, 245, 548
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 344
SetI ASST 5 cut(s) 151, 366, 408, 435, 582
SfaNI GCATC 3 cut(s) 154, 199, 477
SfcI CTRYAG 1 cut(s) 87
SgsI GGCGCGCC 1 cut(s) 38
SmiMI CAYNNNNRTG 3 cut(s) 80, 245, 548
Sse9I AATT 4 cut(s) 15, 197, 301, 459
SsiI CCGC 6 cut(s) 35, 56, 234, 324, 401, 480
TaaI ACNGT 4 cut(s) 79, 225, 244, 547
TasI AATT 4 cut(s) 15, 197, 301, 459
TatI WGTACW 1 cut(s) 349
TauI GCSGC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 3 cut(s) 82, 228, 531
TspDTI ATGAA 3 cut(s) 114, 270, 404
TspGWI ACGGA 1 cut(s) 501
TspRI CASTG 3 cut(s) 82, 228, 531
XagI CCTNNNNNAGG 1 cut(s) 449
XapI RAATTY 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.