AT5G66720

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011198
Physical Location & Seq
Reverse (-)
26638790 .. 26640912
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G66720.1

Sequence Viewer

Length: 1245 bp
ATGTCAGCGACTGCTCTCTCGAGATTAAACCCAGTTTCTCAATTTGGGTTTCAAAGAATCGTTGCTGGGAAAAGTAAGAGCTTCTTCTCCAATTCGGGTCAAAGGAGATTGTTTTCTGATAGTTCTCGGTTTCGTCAAGCCATGGCTGCTTCTGGTTCTTTGCCAGTGTTTGGAGACGCTTGTTTGGATGATTTGGTTACTACTTGTTCAAATGGCTTAGACTTCACTAAGAAGCGTTCTAGTGGTGGTAGCTTCACTATTAATTGTCCTGTAGCTAGCATGAGACTTGGGAAGAGAGGGGGAATGATGAAGAACCGATTGGTTTGTCACTATTCTGTTGTTGATCCGCTAGAAAAGAGTCGTGCACTCTTTGGGACATTGTCTAAGAGTGTTCATACTTCTCCTATGGCTTGTTTCTCGGTTGGACCGGCTCATGAGCTGTCTTCTCTTAACGGTGGTTCTCAAGAGTCACCACCAACTACTACTACATCTCTTAAGAGTCTTAGGCTAGTGTCGGGGTCATGTTATCTCCCGCATCCTGAAAAGGAAGCTACAGGTGGAGAAGACGCTCACTTTATCTGCGATGAAGAACAAGCTATTGGAGTTGCAGATGGAGTTGGCGGTTGGGCTGAGGTTGGTGTTAATGCGGGACTGTTTTCGCGTGAGCTTATGTCTTATTCAGTATCTGCAATTCAAGAACAGCATAAAGGTTCTTCTATCGACCCTTTAGTGGTGTTAGAGAAAGCACATTCTCAAACCAAAGCCAAAGGCTCCTCCACGGCTTGTATCATCGTTTTAAAAGATAAGGGATTACACGCCATTAATCTCGGAGACAGTGGATTCACGGTGGTTAGAGAGGGAACCACGGTGTTTCAGTCTCCGGTTCAGCAGCATGGATTCAACTTCACTTATCAATTAGAGAGTGGGAACAGTGCCGACGTCCCTAGCTCCGGTCAGGTATTCACAATTGATGTTCAGTCTGGAGATGTCATTGTCGCTGGAACAGATGGAGTGTATGATAATTTATACAATGAAGAGATCACAGGAGTGGTGGTTAGCTCGGTGAGGGCCGGTTTAGACCCGAAAGGCACAGCTCAGAAGATTGCAGAGTTGGCACGTCAAAGAGCAGTCGACAAAAAACGGCAGAGCCCTTTCGCAACTGCGGCTCAGGAGGCTGGCTACAGGTATTACGGAGGAAAGCTTGATGACATCACTGCCGTCGTTTCTTACGTCACCTCATCTTAA

Protein Analysis

414

Amino Acids

43.87

Weight (kDa)

7.6

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C_2 PF13672 188 - 357 4.2e-08 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66720 AT5G66720
fragaria_vesca FvH4_1g13720 FvH4_1g13720
malus_domestica MD02G1151900.v1.1 MD15G1266300.v1.1
prunus_persica Prupe.7G151100_v2.0.a1
pyrus_communis pycom02g11930 pycom15g23180
rosa_chinensis RchiOBHm_Chr2g0102131
rosa_laevigata RLG00000017132
rosa_multiflora Rmu_co8315037.1_g000001 Rmu_sc0000157.1_g000039
rosa_roxburghii Rroxscaffold_2G00140760
rosa_rugosa Rorug02G0104600
rosa_samantha Rh2AG153000 Rh2BG158900 Rh2CG158200 Rh2DG158600
rosa_wichuraiana Rw2G011940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 942
AccB7I CCANNNNNTGG 1 cut(s) 170
AccI GTMKAC 1 cut(s) 1131
AccII CGCG 1 cut(s) 661
AciI CCGC 5 cut(s) 347, 533, 621, 647, 1163
AclWI GGATC 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 939
AfiI CCNNNNNNNGG 3 cut(s) 170, 730, 950
AflII CTTAAG 1 cut(s) 494
AgsI TTSAA 4 cut(s) 53, 210, 695, 901
AjiI CACGTC 1 cut(s) 1118
AjuI GAANNNNNNNTTGG 4 cut(s) 302, 334, 582, 614
AleI CACNNNNGTG 1 cut(s) 1046
Alw21I GWGCWC 1 cut(s) 367
Alw26I GTCTC 4 cut(s) 168, 277, 825, 882
Alw44I GTGCAC 1 cut(s) 363
AlwI GGATC 1 cut(s) 338
AlwNI CAGNNNCTG 2 cut(s) 11, 686
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 1 cut(s) 1068
ApaLI GTGCAC 1 cut(s) 363
ApeKI GCWGC 2 cut(s) 146, 889
AseI ATTAAT 2 cut(s) 261, 822
AspS9I GGNCC 2 cut(s) 425, 1068
AsuHPI GGTGA 3 cut(s) 462, 1075, 1225
AsuNHI GCTAGC 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 19
AvaII GGWCC 1 cut(s) 425
BaeGI GKGCMC 1 cut(s) 367
BanII GRGCYC 1 cut(s) 1151
BbsI GAAGAC 2 cut(s) 435, 570
Bbv12I GWGCWC 1 cut(s) 367
BbvCI CCTCAGC 1 cut(s) 630
BbvI GCAGC 2 cut(s) 133, 901
BccI CCATC 2 cut(s) 605, 1001
BceAI ACGGC 3 cut(s) 795, 1157, 1202
BcoDI GTCTC 4 cut(s) 168, 277, 825, 882
BfaI CTAG 5 cut(s) 240, 276, 350, 509, 945
BfmI CTRYAG 3 cut(s) 270, 552, 1180
BfrI CTTAAG 1 cut(s) 494
BisI GCNGC 3 cut(s) 147, 890, 1164
BlsI GCNGC 3 cut(s) 148, 891, 1165
Bme18I GGWCC 1 cut(s) 425
BmeT110I CYCGRG 1 cut(s) 19
BmgBI CACGTC 1 cut(s) 1118
BmgT120I GGNCC 2 cut(s) 425, 1068
BmiI GGNNCC 2 cut(s) 772, 862
BmrI ACTGGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 544
BmtI GCTAGC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 26
BpiI GAAGAC 2 cut(s) 435, 570
BpmI CTGGAG 1 cut(s) 1002
Bpu10I CCTNAGC 2 cut(s) 630, 1167
BpuEI CTTGAG 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 939
BsaJI CCNNGG 3 cut(s) 141, 777, 864
BsaWI WCCGGW 2 cut(s) 880, 950
BsaXI ACNNNNNCTCC 2 cut(s) 1038, 1068
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 730, 950
Bse118I RCCGGY 2 cut(s) 427, 1070
Bse1I ACTGG 2 cut(s) 32, 164
BseDI CCNNGG 3 cut(s) 141, 777, 864
BseGI GGATG 2 cut(s) 193, 535
BseLI CCNNNNNNNGG 3 cut(s) 170, 730, 950
BseMII CTCAG 3 cut(s) 621, 1109, 1181
BseNI ACTGG 2 cut(s) 32, 164
BseRI GAGGAG 1 cut(s) 763
BseSI GKGCMC 1 cut(s) 367
BseXI GCAGC 2 cut(s) 133, 901
BseYI CCCAGC 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 661
BshFI GGCC 1 cut(s) 1070
BsiHKAI GWGCWC 1 cut(s) 367
BsiHKCI CYCGRG 1 cut(s) 19
BsiSI CCGG 4 cut(s) 428, 881, 951, 1071
BslFI GGGAC 3 cut(s) 388, 663, 926
BslI CCNNNNNNNGG 3 cut(s) 170, 730, 950
BsmAI GTCTC 4 cut(s) 168, 277, 825, 882
BsmBI CGTCTC 1 cut(s) 168
BsmFI GGGAC 3 cut(s) 388, 663, 926
BsnI GGCC 1 cut(s) 1070
BsoBI CYCGRG 1 cut(s) 19
Bsp1286I GDGCHC 2 cut(s) 367, 1151
Bsp143I GATC 2 cut(s) 343, 1038
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 5 cut(s) 347, 533, 621, 647, 1163
BspANI GGCC 1 cut(s) 1070
BspCNI CTCAG 3 cut(s) 622, 1108, 1180
BspFNI CGCG 1 cut(s) 661
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 2 cut(s) 772, 862
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 1 cut(s) 338
BspTI CTTAAG 1 cut(s) 494
BsrFI RCCGGY 2 cut(s) 427, 1070
BsrI ACTGG 2 cut(s) 32, 164
BssAI RCCGGY 2 cut(s) 427, 1070
BssECI CCNNGG 3 cut(s) 141, 777, 864
BssMI GATC 2 cut(s) 343, 1038
BssNI GRCGYC 1 cut(s) 939
BssT1I CCWWGG 1 cut(s) 141
Bst4CI ACNGT 6 cut(s) 455, 654, 836, 847, 868, 932
Bst6I CTCTTC 2 cut(s) 287, 1029
BstACI GRCGYC 1 cut(s) 939
BstAFI CTTAAG 1 cut(s) 494
BstC8I GCNNGC 2 cut(s) 277, 1177
BstDEI CTNAG 7 cut(s) 217, 228, 384, 503, 630, 1095, 1167
BstDSI CCRYGG 3 cut(s) 141, 777, 864
BstF5I GGATG 2 cut(s) 193, 535
BstFNI CGCG 1 cut(s) 661
BstKTI GATC 2 cut(s) 346, 1041
BstMAI GTCTC 4 cut(s) 168, 277, 825, 882
BstMBI GATC 2 cut(s) 343, 1038
BstMWI GCNNNNNNNGC 4 cut(s) 146, 1112, 1163, 1172
BstSFI CTRYAG 3 cut(s) 270, 552, 1180
BstSLI GKGCMC 1 cut(s) 367
BstUI CGCG 1 cut(s) 661
BstV1I GCAGC 2 cut(s) 133, 901
BstV2I GAAGAC 2 cut(s) 435, 570
BsuRI GGCC 1 cut(s) 1070
BtgI CCRYGG 3 cut(s) 141, 777, 864
BtgZI GCGATG 1 cut(s) 597
BtrI CACGTC 1 cut(s) 1118
BtsCI GGATG 2 cut(s) 193, 535
BtsI GCAGTG 1 cut(s) 1212
BtsIMutI CAGTG 4 cut(s) 171, 841, 937, 1212
Cac8I GCNNGC 2 cut(s) 277, 1177
CaiI CAGNNNCTG 2 cut(s) 11, 686
CciI TCATGA 1 cut(s) 433
Cfr10I RCCGGY 2 cut(s) 427, 1070
Cfr13I GGNCC 2 cut(s) 425, 1068
CseI GACGC 2 cut(s) 185, 575
CviAII CATG 5 cut(s) 142, 280, 434, 522, 893
DdeI CTNAG 7 cut(s) 217, 228, 384, 503, 630, 1095, 1167
DpnI GATC 2 cut(s) 345, 1040
DpnII GATC 2 cut(s) 343, 1038
DraI TTTAAA 1 cut(s) 798
Eam1104I CTCTTC 2 cut(s) 287, 1029
EarI CTCTTC 2 cut(s) 287, 1029
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 1151
Eco47I GGWCC 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 19
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 1 cut(s) 1151
ErhI CCWWGG 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 168
FaeI CATG 5 cut(s) 145, 283, 437, 525, 896
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FaqI GGGAC 3 cut(s) 388, 663, 926
FatI CATG 5 cut(s) 141, 279, 433, 521, 892
FauI CCCGC 2 cut(s) 540, 640
FblI GTMKAC 1 cut(s) 1131
Fnu4HI GCNGC 3 cut(s) 147, 890, 1164
FokI GGATG 2 cut(s) 200, 522
FriOI GRGCYC 1 cut(s) 1151
Fsp4HI GCNGC 3 cut(s) 147, 890, 1164
FspBI CTAG 5 cut(s) 240, 276, 350, 509, 945
GluI GCNGC 3 cut(s) 147, 890, 1164
GsaI CCCAGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 1002
HaeIII GGCC 1 cut(s) 1070
HapII CCGG 4 cut(s) 428, 881, 951, 1071
HgaI GACGC 2 cut(s) 185, 575
Hin1I GRCGYC 1 cut(s) 939
Hin1II CATG 5 cut(s) 145, 283, 437, 525, 896
HincII GTYRAC 1 cut(s) 1132
HindII GTYRAC 1 cut(s) 1132
HindIII AAGCTT 1 cut(s) 1199
HinfI GANTC 6 cut(s) 57, 358, 467, 499, 840, 897
HpaII CCGG 4 cut(s) 428, 881, 951, 1071
HphI GGTGA 3 cut(s) 462, 1075, 1225
Hpy166II GTNNAC 2 cut(s) 365, 1132
Hpy188I TCNGA 3 cut(s) 118, 830, 1098
Hpy188III TCNNGA 8 cut(s) 19, 21, 434, 464, 539, 695, 981, 1169
Hpy8I GTNNAC 2 cut(s) 365, 1132
Hpy99I CGWCG 2 cut(s) 941, 1223
HpyCH4III ACNGT 6 cut(s) 455, 654, 836, 847, 868, 932
HpyCH4IV ACGT 3 cut(s) 939, 1117, 1230
HpyCH4V TGCA 4 cut(s) 365, 608, 689, 1106
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 1112, 1163, 1172
HpyF3I CTNAG 7 cut(s) 217, 228, 384, 503, 630, 1095, 1167
HpySE526I ACGT 3 cut(s) 939, 1117, 1230
Hsp92I GRCGYC 1 cut(s) 939
Hsp92II CATG 5 cut(s) 145, 283, 437, 525, 896
Kzo9I GATC 2 cut(s) 343, 1038
LmnI GCTCC 2 cut(s) 776, 953
Lsp1109I GCAGC 2 cut(s) 133, 901
LweI GCATC 1 cut(s) 544
MaeI CTAG 5 cut(s) 240, 276, 350, 509, 945
MaeII ACGT 3 cut(s) 939, 1117, 1230
MaeIII GTNAC 4 cut(s) 196, 326, 468, 1231
MalI GATC 2 cut(s) 345, 1040
MboI GATC 2 cut(s) 343, 1038
MboII GAAGA 9 cut(s) 76, 304, 322, 435, 575, 599, 705, 1046, 1111
MfeI CAATTG 1 cut(s) 966
MhlI GDGCHC 2 cut(s) 367, 1151
MluCI AATT 7 cut(s) 41, 91, 262, 690, 914, 966, 1021
MlyI GAGTC 3 cut(s) 367, 476, 508
MmeI TCCRAC 1 cut(s) 403
MnlI CCTC 7 cut(s) 290, 625, 784, 850, 1059, 1165, 1187
MseI TTAA 8 cut(s) 26, 261, 450, 495, 642, 797, 822, 1243
MslI CAYNNNNRTG 1 cut(s) 1046
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 4 cut(s) 428, 881, 951, 1071
MunI CAATTG 1 cut(s) 966
MvnI CGCG 1 cut(s) 661
MwoI GCNNNNNNNGC 4 cut(s) 146, 1112, 1163, 1172
NcoI CCATGG 1 cut(s) 141
NdeII GATC 2 cut(s) 343, 1038
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 5 cut(s) 145, 283, 437, 525, 896
NlaIV GGNNCC 2 cut(s) 772, 862
NmuCI GTSAC 3 cut(s) 326, 468, 1231
OliI CACNNNNGTG 1 cut(s) 1046
PaeR7I CTCGAG 1 cut(s) 19
PagI TCATGA 1 cut(s) 433
PcsI WCGNNNNNNNCGW 1 cut(s) 1227
PfeI GAWTC 3 cut(s) 57, 840, 897
PflFI GACNNNGTC 1 cut(s) 379
PflMI CCANNNNNTGG 1 cut(s) 170
PkrI GCNGC 3 cut(s) 148, 891, 1165
PleI GAGTC 3 cut(s) 366, 475, 507
PpsI GAGTC 3 cut(s) 366, 475, 507
PshBI ATTAAT 2 cut(s) 261, 822
PspFI CCCAGC 1 cut(s) 65
PspN4I GGNNCC 2 cut(s) 772, 862
PspPI GGNCC 2 cut(s) 425, 1068
PstNI CAGNNNCTG 2 cut(s) 11, 686
PsyI GACNNNGTC 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 1046
SalI GTCGAC 1 cut(s) 1130
SaqAI TTAA 8 cut(s) 26, 261, 450, 495, 642, 797, 822, 1243
SatI GCNGC 3 cut(s) 147, 890, 1164
Sau3AI GATC 2 cut(s) 343, 1038
Sau96I GGNCC 2 cut(s) 425, 1068
SchI GAGTC 3 cut(s) 367, 476, 508
SduI GDGCHC 2 cut(s) 367, 1151
SfaNI GCATC 1 cut(s) 544
SfcI CTRYAG 3 cut(s) 270, 552, 1180
Sfr274I CTCGAG 1 cut(s) 19
SinI GGWCC 1 cut(s) 425
SlaI CTCGAG 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 1046
SmlI CTYRAG 3 cut(s) 19, 462, 494
SmoI CTYRAG 3 cut(s) 19, 462, 494
Sse9I AATT 7 cut(s) 41, 91, 262, 690, 914, 966, 1021
SsiI CCGC 5 cut(s) 347, 533, 621, 647, 1163
SspMI CTAG 5 cut(s) 240, 276, 350, 509, 945
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 6 cut(s) 455, 654, 836, 847, 868, 932
TaiI ACGT 3 cut(s) 942, 1120, 1233
TaqI TCGA 3 cut(s) 20, 720, 1131
TasI AATT 7 cut(s) 41, 91, 262, 690, 914, 966, 1021
TauI GCSGC 1 cut(s) 1166
TfiI GAWTC 3 cut(s) 57, 840, 897
Tru1I TTAA 8 cut(s) 26, 261, 450, 495, 642, 797, 822, 1243
Tru9I TTAA 8 cut(s) 26, 261, 450, 495, 642, 797, 822, 1243
TscAI CASTG 4 cut(s) 171, 841, 937, 1219
TseFI GTSAC 3 cut(s) 326, 468, 1231
TseI GCWGC 2 cut(s) 146, 889
Tsp45I GTSAC 3 cut(s) 326, 468, 1231
TspDTI ATGAA 4 cut(s) 323, 383, 600, 1047
TspGWI ACGGA 1 cut(s) 1206
TspRI CASTG 4 cut(s) 171, 841, 937, 1219
Tth111I GACNNNGTC 1 cut(s) 379
Van91I CCANNNNNTGG 1 cut(s) 170
Vha464I CTTAAG 1 cut(s) 494
VneI GTGCAC 1 cut(s) 363
VpaK11BI GGWCC 1 cut(s) 425
VspI ATTAAT 2 cut(s) 261, 822
XhoI CTCGAG 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 1131
XspI CTAG 5 cut(s) 240, 276, 350, 509, 945
ZraI GACGTC 1 cut(s) 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.